Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0006773

Physical Location & Seq

Genomic Coordinates Forward (+)

10575914 .. 10579791

Gene Structure 3878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG132100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGCCGGCAAGAGACTTGGCGAAGGCGTCGAAAGTGAAGGAGGGAATCCAAAGGGAGAATCCAAAGGCTGAGGTTATAATAATGGAGATTGATTTGAGCTCCCTTACTTCTGTTAATAGATTCTGCTCCCACTTCTTGGCTCTAAGACTACCCCTCAATATCCTCATAAACAATGGAGGGATATATTCTAAAGGTTTGGAGTATTCTGAGGACAAGATTGAGATGACATTTGCTACAAATTACTTGGGCCATCATTTTTTGACAGAAAAGCTGCTGGAAAAAATGGTGGAAACGGCAGCTCAGACTGGCATCCGGGGAAGAATCATTAATGTTTCTTCTGTGATCCACAGCTGGGTGAAGAGGGAGAGTTTCTGCTTTAATCAACTGCTCAACCCAAAGAATTACAATGGCACAAAAGCATATGCACAGTCCAAATTGGCCAACATACTGCATGTCAAGGAATTGGCCAAACAGCTTAAGGCGAGAAATGCAAGAGTAACCATCAATGCAGTACACCCGGGAATCGTGAAAACCGGAATTATTAGAGCTCACAAGGGCTTTATCACAGATTCTGTGTTCTTCATAGCATCCAAGTTACTAAAATCAACATCTCAGGGTGCTTCAACAACATGCTATGTTGCTTTAAGCCCAGAATTAGAAGGGGTAACAGGAAAGTACTTTGCAGACTGCAATGAGAACGAGTGCTCAAATCTAGCAAATGATGAATCAGAAGCATACAAGTTATGGAAGCAAACTCGTTTTCTAATCCATAGACGACTATATCAACCATCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0016020 GO:0016491 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

adh_short

Protein Analysis

265

Amino Acids

29.72

Weight (kDa)

9.41

Isoelectric Point (pI)

33.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	4 - 115	2e-13	short chain dehydrogenase
adh_short_C2	PF13561	16 - 226	2.2e-12	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50130 AT5G50130 AT5G50130 AT5G50130 AT5G50130 AT5G50130 AT5G50130 AT5G50130 AT5G50130
fragaria_vesca	FvH4_5g05830 FvH4_5g05830 FvH4_5g05830
malus_domestica	MD06G1170000.v1.1 MD14G1175600.v1.1
prunus_persica	Prupe.5G169500_v2.0.a1
pyrus_communis	pycom06g15140 pycom14g14650
rosa_chinensis	RchiOBHm_Chr7g0192991
rosa_laevigata	RLG00000004303
rosa_multiflora	Rmu_sc0002040.1_g000068
rosa_roxburghii	Rroxscaffold_3G00262470
rosa_rugosa	Rorug07G0007300
rosa_samantha	Rh7AG132100 Rh7BG133000 Rh7DG134000
rosa_wichuraiana	Rw7G011270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	77
AccB7I	CCANNNNNTGG	1 cut(s)	136
AclWI	GGATC	1 cut(s)	337
AcoI	YGGCCR	2 cut(s)	438, 465
AcyI	GRCGYC	1 cut(s)	26
AfaI	GTAC	2 cut(s)	513, 677
AfiI	CCNNNNNNNGG	2 cut(s)	136, 352
AflII	CTTAAG	1 cut(s)	476
AgsI	TTSAA	1 cut(s)	624
AluBI	AGCT	7 cut(s)	99, 271, 299, 351, 475, 548, 794
AluI	AGCT	7 cut(s)	99, 271, 299, 351, 475, 548, 794
Alw21I	GWGCWC	3 cut(s)	101, 550, 707
Alw26I	GTCTC	1 cut(s)	6
AlwI	GGATC	1 cut(s)	337
AlwNI	CAGNNNCTG	1 cut(s)	572
Ama87I	CYCGRG	1 cut(s)	517
AoxI	GGCC	3 cut(s)	247, 438, 465
ApeKI	GCWGC	2 cut(s)	271, 296
AseI	ATTAAT	1 cut(s)	327
AspS9I	GGNCC	1 cut(s)	247
AsuC2I	CCSGG	3 cut(s)	314, 518, 519
AsuHPI	GGTGA	1 cut(s)	367
AvaI	CYCGRG	1 cut(s)	517
BalI	TGGCCA	2 cut(s)	440, 467
BanII	GRGCYC	2 cut(s)	101, 550
Bbv12I	GWGCWC	3 cut(s)	101, 550, 707
BbvCI	CCTCAGC	1 cut(s)	69
BbvI	GCAGC	2 cut(s)	258, 308
BccI	CCATC	3 cut(s)	258, 509, 796
BceAI	ACGGC	1 cut(s)	309
BcnI	CCSGG	3 cut(s)	314, 518, 519
BcoDI	GTCTC	1 cut(s)	6
BfaI	CTAG	1 cut(s)	713
BfrI	CTTAAG	1 cut(s)	476
BisI	GCNGC	2 cut(s)	272, 297
BlsI	GCNGC	2 cut(s)	273, 298
BmcAI	AGTACT	1 cut(s)	677
Bme1390I	CCNGG	3 cut(s)	314, 518, 519
BmeT110I	CYCGRG	1 cut(s)	517
BmgT120I	GGNCC	1 cut(s)	247
BmrFI	CCNGG	3 cut(s)	314, 518, 519
BmsI	GCATC	2 cut(s)	318, 596
Bpu10I	CCTNAGC	1 cut(s)	69
BpuMI	CCSGG	3 cut(s)	314, 518, 519
BsaHI	GRCGYC	1 cut(s)	26
BsaJI	CCNNGG	2 cut(s)	313, 517
BsaWI	WCCGGW	1 cut(s)	533
Bsc4I	CCNNNNNNNGG	2 cut(s)	136, 352
Bse118I	RCCGGY	1 cut(s)	4
Bse1I	ACTGG	1 cut(s)	310
Bse3DI	GCAATG	1 cut(s)	697
BseDI	CCNNGG	2 cut(s)	313, 517
BseGI	GGATG	2 cut(s)	309, 587
BseLI	CCNNNNNNNGG	2 cut(s)	136, 352
BseMI	GCAATG	1 cut(s)	697
BseMII	CTCAG	4 cut(s)	60, 198, 314, 626
BseNI	ACTGG	1 cut(s)	310
BseXI	GCAGC	2 cut(s)	258, 308
BseYI	CCCAGC	1 cut(s)	351
BshFI	GGCC	3 cut(s)	249, 440, 467
BsiHKAI	GWGCWC	3 cut(s)	101, 550, 707
BsiHKCI	CYCGRG	1 cut(s)	517
BsiSI	CCGG	4 cut(s)	5, 313, 518, 534
BslI	CCNNNNNNNGG	2 cut(s)	136, 352
BsmAI	GTCTC	1 cut(s)	6
BsnI	GGCC	3 cut(s)	249, 440, 467
BsoBI	CYCGRG	1 cut(s)	517
Bsp1286I	GDGCHC	3 cut(s)	101, 550, 707
Bsp143I	GATC	1 cut(s)	342
BspANI	GGCC	3 cut(s)	249, 440, 467
BspCNI	CTCAG	4 cut(s)	61, 199, 313, 625
BspPI	GGATC	1 cut(s)	337
BspTI	CTTAAG	1 cut(s)	476
BsrDI	GCAATG	1 cut(s)	697
BsrFI	RCCGGY	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	310
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	2 cut(s)	313, 517
BssMI	GATC	1 cut(s)	342
BssNI	GRCGYC	1 cut(s)	26
Bst4CI	ACNGT	1 cut(s)	429
Bst6I	CTCTTC	1 cut(s)	353
BstACI	GRCGYC	1 cut(s)	26
BstAFI	CTTAAG	1 cut(s)	476
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	5 cut(s)	69, 143, 207, 300, 612
BstF5I	GGATG	2 cut(s)	309, 587
BstKTI	GATC	1 cut(s)	345
BstMAI	GTCTC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	342
BstMWI	GCNNNNNNNGC	1 cut(s)	488
BstNSI	RCATGY	2 cut(s)	455, 633
BstSCI	CCNGG	3 cut(s)	312, 516, 517
BstV1I	GCAGC	2 cut(s)	258, 308
BsuRI	GGCC	3 cut(s)	249, 440, 467
BtsCI	GGATG	2 cut(s)	309, 587
Cac8I	GCNNGC	1 cut(s)	6
CaiI	CAGNNNCTG	1 cut(s)	572
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	1 cut(s)	247
Cfr9I	CCCGGG	1 cut(s)	517
CseI	GACGC	1 cut(s)	15
Csp6I	GTAC	2 cut(s)	512, 676
CviAII	CATG	2 cut(s)	452, 630
CviQI	GTAC	2 cut(s)	512, 676
DdeI	CTNAG	5 cut(s)	69, 143, 207, 300, 612
DpnI	GATC	1 cut(s)	344
DpnII	GATC	1 cut(s)	342
EaeI	YGGCCR	2 cut(s)	438, 465
Eam1104I	CTCTTC	1 cut(s)	353
EarI	CTCTTC	1 cut(s)	353
Ecl136II	GAGCTC	2 cut(s)	99, 548
Eco24I	GRGCYC	2 cut(s)	101, 550
Eco53kI	GAGCTC	2 cut(s)	99, 548
Eco88I	CYCGRG	1 cut(s)	517
EcoICRI	GAGCTC	2 cut(s)	99, 548
EcoT38I	GRGCYC	2 cut(s)	101, 550
FaeI	CATG	2 cut(s)	455, 633
FatI	CATG	2 cut(s)	451, 629
FauNDI	CATATG	1 cut(s)	421
Fnu4HI	GCNGC	2 cut(s)	272, 297
FokI	GGATG	2 cut(s)	296, 574
FriOI	GRGCYC	2 cut(s)	101, 550
Fsp4HI	GCNGC	2 cut(s)	272, 297
FspBI	CTAG	1 cut(s)	713
GluI	GCNGC	2 cut(s)	272, 297
GsaI	CCCAGC	1 cut(s)	355
HaeIII	GGCC	3 cut(s)	249, 440, 467
HapII	CCGG	4 cut(s)	5, 313, 518, 534
HgaI	GACGC	1 cut(s)	15
Hin1I	GRCGYC	1 cut(s)	26
Hin1II	CATG	2 cut(s)	455, 633
HinfI	GANTC	7 cut(s)	45, 58, 120, 321, 522, 569, 725
HpaII	CCGG	4 cut(s)	5, 313, 518, 534
HphI	GGTGA	1 cut(s)	367
Hpy166II	GTNNAC	1 cut(s)	514
Hpy188I	TCNGA	3 cut(s)	208, 303, 730
Hpy188III	TCNNGA	1 cut(s)	526
Hpy8I	GTNNAC	1 cut(s)	514
Hpy99I	CGWCG	1 cut(s)	31
HpyAV	CCTTC	3 cut(s)	16, 31, 653
HpyCH4III	ACNGT	1 cut(s)	429
HpyCH4V	TGCA	6 cut(s)	425, 451, 491, 509, 683, 690
HpyF10VI	GCNNNNNNNGC	1 cut(s)	488
HpyF3I	CTNAG	5 cut(s)	69, 143, 207, 300, 612
Hsp92I	GRCGYC	1 cut(s)	26
Hsp92II	CATG	2 cut(s)	455, 633
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
Kzo9I	GATC	1 cut(s)	342
LmnI	GCTCC	2 cut(s)	104, 131
Lsp1109I	GCAGC	2 cut(s)	258, 308
LweI	GCATC	2 cut(s)	318, 596
MaeI	CTAG	1 cut(s)	713
MaeIII	GTNAC	3 cut(s)	496, 594, 664
MalI	GATC	1 cut(s)	344
MboI	GATC	1 cut(s)	342
MboII	GAAGA	4 cut(s)	327, 330, 370, 571
MhlI	GDGCHC	3 cut(s)	101, 550, 707
MlsI	TGGCCA	2 cut(s)	440, 467
MluCI	AATT	6 cut(s)	238, 400, 434, 461, 537, 653
MluNI	TGGCCA	2 cut(s)	440, 467
MnlI	CCTC	7 cut(s)	34, 64, 164, 170, 173, 202, 354
Mox20I	TGGCCA	2 cut(s)	440, 467
MroNI	GCCGGC	1 cut(s)	4
MscI	TGGCCA	2 cut(s)	440, 467
MseI	TTAA	6 cut(s)	114, 327, 378, 477, 644, 796
Msp20I	TGGCCA	2 cut(s)	440, 467
MspA1I	CMGCKG	1 cut(s)	351
MspCI	CTTAAG	1 cut(s)	476
MspI	CCGG	4 cut(s)	5, 313, 518, 534
MspR9I	CCNGG	3 cut(s)	314, 518, 519
MwoI	GCNNNNNNNGC	1 cut(s)	488
NaeI	GCCGGC	1 cut(s)	6
NciI	CCSGG	3 cut(s)	314, 518, 519
NdeI	CATATG	1 cut(s)	421
NdeII	GATC	1 cut(s)	342
NgoMIV	GCCGGC	1 cut(s)	4
NlaIII	CATG	2 cut(s)	455, 633
NspI	RCATGY	2 cut(s)	455, 633
PdiI	GCCGGC	1 cut(s)	6
PfeI	GAWTC	7 cut(s)	45, 58, 120, 321, 522, 569, 725
PflMI	CCANNNNNTGG	1 cut(s)	136
PkrI	GCNGC	2 cut(s)	273, 298
PshBI	ATTAAT	1 cut(s)	327
PsiI	TTATAA	1 cut(s)	77
Psp124BI	GAGCTC	2 cut(s)	101, 550
PspFI	CCCAGC	1 cut(s)	351
PspPI	GGNCC	1 cut(s)	247
PstNI	CAGNNNCTG	1 cut(s)	572
PvuII	CAGCTG	1 cut(s)	351
RsaI	GTAC	2 cut(s)	513, 677
RsaNI	GTAC	2 cut(s)	512, 676
SacI	GAGCTC	2 cut(s)	101, 550
SaqAI	TTAA	6 cut(s)	114, 327, 378, 477, 644, 796
SatI	GCNGC	2 cut(s)	272, 297
Sau3AI	GATC	1 cut(s)	342
Sau96I	GGNCC	1 cut(s)	247
ScaI	AGTACT	1 cut(s)	677
ScrFI	CCNGG	3 cut(s)	314, 518, 519
SduI	GDGCHC	3 cut(s)	101, 550, 707
SetI	ASST	9 cut(s)	75, 101, 196, 273, 301, 353, 477, 550, 796
SfaNI	GCATC	2 cut(s)	318, 596
SmaI	CCCGGG	1 cut(s)	519
SmlI	CTYRAG	1 cut(s)	476
SmoI	CTYRAG	1 cut(s)	476
Sse9I	AATT	6 cut(s)	238, 400, 434, 461, 537, 653
SspMI	CTAG	1 cut(s)	713
SstI	GAGCTC	2 cut(s)	101, 550
StyD4I	CCNGG	3 cut(s)	312, 516, 517
TaaI	ACNGT	1 cut(s)	429
TaqI	TCGA	1 cut(s)	29
TasI	AATT	6 cut(s)	238, 400, 434, 461, 537, 653
TatI	WGTACW	2 cut(s)	511, 675
TfiI	GAWTC	7 cut(s)	45, 58, 120, 321, 522, 569, 725
Tru1I	TTAA	6 cut(s)	114, 327, 378, 477, 644, 796
Tru9I	TTAA	6 cut(s)	114, 327, 378, 477, 644, 796
TseI	GCWGC	2 cut(s)	271, 296
TspDTI	ATGAA	2 cut(s)	571, 738
TspMI	CCCGGG	1 cut(s)	517
Van91I	CCANNNNNTGG	1 cut(s)	136
Vha464I	CTTAAG	1 cut(s)	476
VspI	ATTAAT	1 cut(s)	327
XceI	RCATGY	2 cut(s)	455, 633
XmaI	CCCGGG	1 cut(s)	517
XspI	CTAG	1 cut(s)	713
ZrmI	AGTACT	1 cut(s)	677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.