Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0006773

Physical Location & Seq

Genomic Coordinates Forward (+)

11310938 .. 11314635

Gene Structure 3698 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG134000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGCCGGCAAGAGACTTGGCGAAGGCGTCGAAAGTGAAGGAGGGAATCCAAAGGGAGAATCCAAAGGCTGAGGTTATAATAATGGAGATTGATTTGAGCTCCCTTACTTCTGTTAATAGATTCTGCTCCCAGTTCTTGGCTCTAAGACTACCCCTCAATATCCTCATAAACAATGGAGGGATATATTCTAAAGGTTTGGAGTATTCTGAGGACAAGATTGAGATGACATTTGCTACAAATTACTTGGGCCATCATTTTTTGACAGAAAAGCTGCTGGAAAAAATGGTGGAAACGGCAGCTCAGACTGGCATCCGGGGAAGAATCATTAATGTTTCTTCTGTGATCCACAGCTGGGTGAAGAGGGAGAGTTTCTGCTTTAATCAACTGCTCAACCCAAAGAATTACAATGGCACAAAAGCATATGCACAGTCCAAATTGGCCAACATACTGCATGTCAAGGAATTGGCCAAACAGCTTAAGGCGAGAAATGCAAGAGTAACCATCAATGCAGTACACCCGGGAATCGTGAAAACCGGAATTATTAGAGCTCACAAGGGCTTTATCACAGATTCTGTGTTCTTCATAGCATCCAAGTTACTAAAATCAACATCTCAGGGTGCTTCAACAACATGCTATGTTGCTTTAAGCCCAGAATTAGAAGGGGTAACAGGAAAGTACTTTGCAGACTGCAATGAGAACGAGTGCTCAAATCTAGCAAATGATGAATCAGAAGCATACAAGTTATGGAAGCAAACTCGTTTTCTAATCCATAGACGACTATGCCAACCAACAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0016020 GO:0016491 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

adh_short

Protein Analysis

265

Amino Acids

29.67

Weight (kDa)

9.38

Isoelectric Point (pI)

33.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	4 - 115	1.6e-13	short chain dehydrogenase
adh_short_C2	PF13561	16 - 226	1.6e-12	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50130 AT5G50130 AT5G50130 AT5G50130 AT5G50130 AT5G50130 AT5G50130 AT5G50130 AT5G50130
fragaria_vesca	FvH4_5g05830 FvH4_5g05830 FvH4_5g05830
malus_domestica	MD06G1170000.v1.1 MD14G1175600.v1.1
prunus_persica	Prupe.5G169500_v2.0.a1
pyrus_communis	pycom06g15140 pycom14g14650
rosa_chinensis	RchiOBHm_Chr7g0192991
rosa_laevigata	RLG00000004303
rosa_multiflora	Rmu_sc0002040.1_g000068
rosa_roxburghii	Rroxscaffold_3G00262470
rosa_rugosa	Rorug07G0007300
rosa_samantha	Rh7AG132100 Rh7BG133000 Rh7DG134000
rosa_wichuraiana	Rw7G011270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	77
AccB7I	CCANNNNNTGG	1 cut(s)	136
AclWI	GGATC	1 cut(s)	337
AcoI	YGGCCR	2 cut(s)	438, 465
AcyI	GRCGYC	1 cut(s)	26
AfaI	GTAC	2 cut(s)	513, 677
AfiI	CCNNNNNNNGG	2 cut(s)	136, 352
AflII	CTTAAG	1 cut(s)	476
AgsI	TTSAA	1 cut(s)	624
AluBI	AGCT	7 cut(s)	99, 271, 299, 351, 475, 548, 794
AluI	AGCT	7 cut(s)	99, 271, 299, 351, 475, 548, 794
Alw21I	GWGCWC	3 cut(s)	101, 550, 707
Alw26I	GTCTC	1 cut(s)	6
AlwI	GGATC	1 cut(s)	337
AlwNI	CAGNNNCTG	1 cut(s)	572
Ama87I	CYCGRG	1 cut(s)	517
AoxI	GGCC	3 cut(s)	247, 438, 465
ApeKI	GCWGC	2 cut(s)	271, 296
AseI	ATTAAT	1 cut(s)	327
AspS9I	GGNCC	1 cut(s)	247
AsuC2I	CCSGG	3 cut(s)	314, 518, 519
AsuHPI	GGTGA	1 cut(s)	367
AvaI	CYCGRG	1 cut(s)	517
BalI	TGGCCA	2 cut(s)	440, 467
BanII	GRGCYC	2 cut(s)	101, 550
Bbv12I	GWGCWC	3 cut(s)	101, 550, 707
BbvCI	CCTCAGC	1 cut(s)	69
BbvI	GCAGC	2 cut(s)	258, 308
BccI	CCATC	2 cut(s)	258, 509
BceAI	ACGGC	1 cut(s)	309
BcnI	CCSGG	3 cut(s)	314, 518, 519
BcoDI	GTCTC	1 cut(s)	6
BfaI	CTAG	1 cut(s)	713
BfrI	CTTAAG	1 cut(s)	476
BisI	GCNGC	2 cut(s)	272, 297
BlsI	GCNGC	2 cut(s)	273, 298
BmcAI	AGTACT	1 cut(s)	677
Bme1390I	CCNGG	3 cut(s)	314, 518, 519
BmeT110I	CYCGRG	1 cut(s)	517
BmgT120I	GGNCC	1 cut(s)	247
BmrFI	CCNGG	3 cut(s)	314, 518, 519
BmrI	ACTGGG	1 cut(s)	124
BmsI	GCATC	2 cut(s)	318, 596
BmuI	ACTGGG	1 cut(s)	124
Bpu10I	CCTNAGC	1 cut(s)	69
BpuMI	CCSGG	3 cut(s)	314, 518, 519
BsaHI	GRCGYC	1 cut(s)	26
BsaJI	CCNNGG	2 cut(s)	313, 517
BsaWI	WCCGGW	1 cut(s)	533
Bsc4I	CCNNNNNNNGG	2 cut(s)	136, 352
Bse118I	RCCGGY	1 cut(s)	4
Bse1I	ACTGG	2 cut(s)	130, 310
Bse3DI	GCAATG	1 cut(s)	697
BseDI	CCNNGG	2 cut(s)	313, 517
BseGI	GGATG	2 cut(s)	309, 587
BseLI	CCNNNNNNNGG	2 cut(s)	136, 352
BseMI	GCAATG	1 cut(s)	697
BseMII	CTCAG	4 cut(s)	60, 198, 314, 626
BseNI	ACTGG	2 cut(s)	130, 310
BseXI	GCAGC	2 cut(s)	258, 308
BseYI	CCCAGC	1 cut(s)	351
BshFI	GGCC	3 cut(s)	249, 440, 467
BsiHKAI	GWGCWC	3 cut(s)	101, 550, 707
BsiHKCI	CYCGRG	1 cut(s)	517
BsiSI	CCGG	4 cut(s)	5, 313, 518, 534
BslI	CCNNNNNNNGG	2 cut(s)	136, 352
BsmAI	GTCTC	1 cut(s)	6
BsnI	GGCC	3 cut(s)	249, 440, 467
BsoBI	CYCGRG	1 cut(s)	517
Bsp1286I	GDGCHC	3 cut(s)	101, 550, 707
Bsp143I	GATC	1 cut(s)	342
BspANI	GGCC	3 cut(s)	249, 440, 467
BspCNI	CTCAG	4 cut(s)	61, 199, 313, 625
BspPI	GGATC	1 cut(s)	337
BspTI	CTTAAG	1 cut(s)	476
BsrDI	GCAATG	1 cut(s)	697
BsrFI	RCCGGY	1 cut(s)	4
BsrI	ACTGG	2 cut(s)	130, 310
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	2 cut(s)	313, 517
BssMI	GATC	1 cut(s)	342
BssNI	GRCGYC	1 cut(s)	26
Bst4CI	ACNGT	1 cut(s)	429
Bst6I	CTCTTC	1 cut(s)	353
BstACI	GRCGYC	1 cut(s)	26
BstAFI	CTTAAG	1 cut(s)	476
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	5 cut(s)	69, 143, 207, 300, 612
BstF5I	GGATG	2 cut(s)	309, 587
BstKTI	GATC	1 cut(s)	345
BstMAI	GTCTC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	342
BstMWI	GCNNNNNNNGC	1 cut(s)	488
BstNSI	RCATGY	2 cut(s)	455, 633
BstSCI	CCNGG	3 cut(s)	312, 516, 517
BstV1I	GCAGC	2 cut(s)	258, 308
BsuRI	GGCC	3 cut(s)	249, 440, 467
BtsCI	GGATG	2 cut(s)	309, 587
Cac8I	GCNNGC	1 cut(s)	6
CaiI	CAGNNNCTG	1 cut(s)	572
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	1 cut(s)	247
Cfr9I	CCCGGG	1 cut(s)	517
CseI	GACGC	1 cut(s)	15
Csp6I	GTAC	2 cut(s)	512, 676
CviAII	CATG	2 cut(s)	452, 630
CviQI	GTAC	2 cut(s)	512, 676
DdeI	CTNAG	5 cut(s)	69, 143, 207, 300, 612
DpnI	GATC	1 cut(s)	344
DpnII	GATC	1 cut(s)	342
EaeI	YGGCCR	2 cut(s)	438, 465
Eam1104I	CTCTTC	1 cut(s)	353
EarI	CTCTTC	1 cut(s)	353
Ecl136II	GAGCTC	2 cut(s)	99, 548
Eco24I	GRGCYC	2 cut(s)	101, 550
Eco53kI	GAGCTC	2 cut(s)	99, 548
Eco88I	CYCGRG	1 cut(s)	517
EcoICRI	GAGCTC	2 cut(s)	99, 548
EcoT38I	GRGCYC	2 cut(s)	101, 550
FaeI	CATG	2 cut(s)	455, 633
FatI	CATG	2 cut(s)	451, 629
FauNDI	CATATG	1 cut(s)	421
Fnu4HI	GCNGC	2 cut(s)	272, 297
FokI	GGATG	2 cut(s)	296, 574
FriOI	GRGCYC	2 cut(s)	101, 550
Fsp4HI	GCNGC	2 cut(s)	272, 297
FspBI	CTAG	1 cut(s)	713
GluI	GCNGC	2 cut(s)	272, 297
GsaI	CCCAGC	1 cut(s)	355
HaeIII	GGCC	3 cut(s)	249, 440, 467
HapII	CCGG	4 cut(s)	5, 313, 518, 534
HgaI	GACGC	1 cut(s)	15
Hin1I	GRCGYC	1 cut(s)	26
Hin1II	CATG	2 cut(s)	455, 633
HinfI	GANTC	7 cut(s)	45, 58, 120, 321, 522, 569, 725
HpaII	CCGG	4 cut(s)	5, 313, 518, 534
HphI	GGTGA	1 cut(s)	367
Hpy166II	GTNNAC	1 cut(s)	514
Hpy188I	TCNGA	3 cut(s)	208, 303, 730
Hpy188III	TCNNGA	1 cut(s)	526
Hpy8I	GTNNAC	1 cut(s)	514
Hpy99I	CGWCG	1 cut(s)	31
HpyAV	CCTTC	3 cut(s)	16, 31, 653
HpyCH4III	ACNGT	1 cut(s)	429
HpyCH4V	TGCA	6 cut(s)	425, 451, 491, 509, 683, 690
HpyF10VI	GCNNNNNNNGC	1 cut(s)	488
HpyF3I	CTNAG	5 cut(s)	69, 143, 207, 300, 612
Hsp92I	GRCGYC	1 cut(s)	26
Hsp92II	CATG	2 cut(s)	455, 633
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
Kzo9I	GATC	1 cut(s)	342
LmnI	GCTCC	2 cut(s)	104, 131
Lsp1109I	GCAGC	2 cut(s)	258, 308
LweI	GCATC	2 cut(s)	318, 596
MaeI	CTAG	1 cut(s)	713
MaeIII	GTNAC	3 cut(s)	496, 594, 664
MalI	GATC	1 cut(s)	344
MboI	GATC	1 cut(s)	342
MboII	GAAGA	4 cut(s)	327, 330, 370, 571
MhlI	GDGCHC	3 cut(s)	101, 550, 707
MlsI	TGGCCA	2 cut(s)	440, 467
MluCI	AATT	6 cut(s)	238, 400, 434, 461, 537, 653
MluNI	TGGCCA	2 cut(s)	440, 467
MnlI	CCTC	7 cut(s)	34, 64, 164, 170, 173, 202, 354
Mox20I	TGGCCA	2 cut(s)	440, 467
MroNI	GCCGGC	1 cut(s)	4
MscI	TGGCCA	2 cut(s)	440, 467
MseI	TTAA	6 cut(s)	114, 327, 378, 477, 644, 796
Msp20I	TGGCCA	2 cut(s)	440, 467
MspA1I	CMGCKG	1 cut(s)	351
MspCI	CTTAAG	1 cut(s)	476
MspI	CCGG	4 cut(s)	5, 313, 518, 534
MspR9I	CCNGG	3 cut(s)	314, 518, 519
MwoI	GCNNNNNNNGC	1 cut(s)	488
NaeI	GCCGGC	1 cut(s)	6
NciI	CCSGG	3 cut(s)	314, 518, 519
NdeI	CATATG	1 cut(s)	421
NdeII	GATC	1 cut(s)	342
NgoMIV	GCCGGC	1 cut(s)	4
NlaIII	CATG	2 cut(s)	455, 633
NspI	RCATGY	2 cut(s)	455, 633
PdiI	GCCGGC	1 cut(s)	6
PfeI	GAWTC	7 cut(s)	45, 58, 120, 321, 522, 569, 725
PflMI	CCANNNNNTGG	1 cut(s)	136
PkrI	GCNGC	2 cut(s)	273, 298
PshBI	ATTAAT	1 cut(s)	327
PsiI	TTATAA	1 cut(s)	77
Psp124BI	GAGCTC	2 cut(s)	101, 550
PspFI	CCCAGC	1 cut(s)	351
PspPI	GGNCC	1 cut(s)	247
PstNI	CAGNNNCTG	1 cut(s)	572
PvuII	CAGCTG	1 cut(s)	351
RsaI	GTAC	2 cut(s)	513, 677
RsaNI	GTAC	2 cut(s)	512, 676
SacI	GAGCTC	2 cut(s)	101, 550
SaqAI	TTAA	6 cut(s)	114, 327, 378, 477, 644, 796
SatI	GCNGC	2 cut(s)	272, 297
Sau3AI	GATC	1 cut(s)	342
Sau96I	GGNCC	1 cut(s)	247
ScaI	AGTACT	1 cut(s)	677
ScrFI	CCNGG	3 cut(s)	314, 518, 519
SduI	GDGCHC	3 cut(s)	101, 550, 707
SetI	ASST	9 cut(s)	75, 101, 196, 273, 301, 353, 477, 550, 796
SfaNI	GCATC	2 cut(s)	318, 596
SmaI	CCCGGG	1 cut(s)	519
SmlI	CTYRAG	1 cut(s)	476
SmoI	CTYRAG	1 cut(s)	476
Sse9I	AATT	6 cut(s)	238, 400, 434, 461, 537, 653
SspMI	CTAG	1 cut(s)	713
SstI	GAGCTC	2 cut(s)	101, 550
StyD4I	CCNGG	3 cut(s)	312, 516, 517
TaaI	ACNGT	1 cut(s)	429
TaqI	TCGA	1 cut(s)	29
TasI	AATT	6 cut(s)	238, 400, 434, 461, 537, 653
TatI	WGTACW	2 cut(s)	511, 675
TfiI	GAWTC	7 cut(s)	45, 58, 120, 321, 522, 569, 725
Tru1I	TTAA	6 cut(s)	114, 327, 378, 477, 644, 796
Tru9I	TTAA	6 cut(s)	114, 327, 378, 477, 644, 796
TseI	GCWGC	2 cut(s)	271, 296
TspDTI	ATGAA	2 cut(s)	571, 738
TspMI	CCCGGG	1 cut(s)	517
Van91I	CCANNNNNTGG	1 cut(s)	136
Vha464I	CTTAAG	1 cut(s)	476
VspI	ATTAAT	1 cut(s)	327
XceI	RCATGY	2 cut(s)	455, 633
XmaI	CCCGGG	1 cut(s)	517
XspI	CTAG	1 cut(s)	713
ZrmI	AGTACT	1 cut(s)	677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.