Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8480363.1

Orthogroup ID

OG0002701

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1141

Gene Structure 1140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8480363.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

atgaatatagcttggctcctgcttttgatggttttctttaatgggtttgcctcacatggagctaccaccaacatctctacaagaccagaatttgtaaatgttggggccatgcttgctctcaattccattgttggcaaagttgccaatgtggcaatacaagctgctgttgaagatgtgaattctgacccttctgttctcagtggaaccaagatgagagttgcaacgcagaattcaaactacagtggatttctgggcatagttgaggctttacgattcatggagaaggacacagtggccataattggaccccagaatgctgtaacggctcatgcagtatctcacattgcaaatgagctgcacactcctctgttgtcatttgcagtaacagatcccaccctgtcttcacttcagttcccatattttgttaggactactcagaacgatttgtttcagatggctgcagtagccgatatggttgagtattatggatggagagaggtaattgcaatatatgttgatgatgatttagggagaaatgggattgcagcattaggggatttgcttgctgagaaacgttctaagatctcatacaaagcacctctggttcttgatcctactcggaataacatcactgatgtactgattaaagtgtctttaactgagtctaggattattgttcttcatgtttatccaggttggggccctgaggtgcttagtgtggccaattatcttggcatgatgggaacagggtttgtttggatagctactcattggctttctagttatatagattccaccattcccctccctatgagtactttggataatatgcaaggagttctaacattgcgcatgtacacgccagatacagaacagaaaagaaaatttgtttcgaggtggagcaacttgactggtggtaaccaaattgggttgaatgctttcggt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007267 GO:0008066 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009682 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009864 GO:0009867 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0031347 GO:0031349 GO:0032870 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0042742 GO:0043200 GO:0043207 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046873 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071395 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0080134 GO:0098542 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

315

Amino Acids

34.49

Weight (kDa)

5.66

Isoelectric Point (pI)

28.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002701)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10191 FvH4_1g10191 FvH4_1g10191 FvH4_1g10191 FvH4_1g10191 FvH4_1g10191
malus_domestica	MD02G1114100.v1.1 MD15G1229200.v1.1
prunus_persica	Prupe.7G106900_v2.0.a1 Prupe.7G184200_v2.0.a1 Prupe.7G184200_v2.0.a1 Prupe.7G184200_v2.0.a1 Prupe.7G184200_v2.0.a1 Prupe.7G184200_v2.0.a1 Prupe.7G184600_v2.0.a1 Prupe.7G184600_v2.0.a1 Prupe.7G184600_v2.0.a1 Prupe.7G184600_v2.0.a1 Prupe.7G223100_v2.0.a1 Prupe.7G223100_v2.0.a1 Prupe.7G223100_v2.0.a1 Prupe.7G223100_v2.0.a1 Prupe.7G223100_v2.0.a1 Prupe.7G223100_v2.0.a1 Prupe.7G223100_v2.0.a1 Prupe.7G223100_v2.0.a1
pyrus_communis	pycom02g08900
rosa_chinensis	RchiOBHm_Chr2g0096991
rosa_laevigata	RLG00000016690
rosa_multiflora	Rmu_co8480363.1_g000001 Rmu_sc0005782.1_g000006
rosa_roxburghii	Rroxscaffold_2G00145100
rosa_rugosa	Rorug02G0062600 Rorug02G0062700
rosa_samantha	Rh2AG110500 Rh2BG112300 Rh2CG114400 Rh2DG113600
rosa_wichuraiana	Rw2G008550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	851
AclI	AACGTT	1 cut(s)	574
AclWI	GGATC	2 cut(s)	383, 605
AcoI	YGGCCR	2 cut(s)	294, 720
AcsI	RAATTY	4 cut(s)	89, 178, 229, 884
AcuI	CTGAAG	1 cut(s)	392
AfaI	GTAC	3 cut(s)	639, 817, 857
AfiI	CCNNNNNNNGG	1 cut(s)	698
AgsI	TTSAA	3 cut(s)	170, 234, 934
AjnI	CCWGG	1 cut(s)	691
AluBI	AGCT	5 cut(s)	11, 62, 161, 355, 764
AluI	AGCT	5 cut(s)	11, 62, 161, 355, 764
AlwI	GGATC	2 cut(s)	383, 605
AoxI	GGCC	4 cut(s)	105, 294, 700, 720
ApaI	GGGCCC	1 cut(s)	704
ApeKI	GCWGC	4 cut(s)	161, 355, 458, 545
ApoI	RAATTY	4 cut(s)	89, 178, 229, 884
Asp700I	GAANNNNTTC	1 cut(s)	938
AspLEI	GCGC	1 cut(s)	852
AspS9I	GGNCC	4 cut(s)	105, 305, 700, 701
AvaII	GGWCC	1 cut(s)	305
AxyI	CCTNAGG	1 cut(s)	705
BaeGI	GKGCMC	1 cut(s)	704
BalI	TGGCCA	2 cut(s)	296, 722
BanII	GRGCYC	1 cut(s)	704
BbsI	GAAGAC	1 cut(s)	393
BbvI	GCAGC	4 cut(s)	148, 342, 445, 557
BccI	CCATC	4 cut(s)	22, 448, 483, 733
BceAI	ACGGC	1 cut(s)	339
BciT130I	CCWGG	1 cut(s)	693
BfaI	CTAG	2 cut(s)	666, 780
BfmI	CTRYAG	2 cut(s)	238, 459
BglI	GCCNNNNNGGC	1 cut(s)	149
BglII	AGATCT	1 cut(s)	582
BisI	GCNGC	4 cut(s)	162, 356, 459, 546
BlsI	GCNGC	4 cut(s)	163, 357, 460, 547
BmcAI	AGTACT	1 cut(s)	817
Bme1390I	CCNGG	1 cut(s)	693
Bme18I	GGWCC	1 cut(s)	305
BmgT120I	GGNCC	4 cut(s)	105, 305, 700, 701
BmiI	GGNNCC	6 cut(s)	17, 106, 205, 307, 701, 702
BmrFI	CCNGG	1 cut(s)	693
BpiI	GAAGAC	1 cut(s)	393
Bsc4I	CCNNNNNNNGG	1 cut(s)	698
Bse1I	ACTGG	1 cut(s)	916
Bse21I	CCTNAGG	1 cut(s)	705
Bse3DI	GCAATG	2 cut(s)	342, 845
BseBI	CCWGG	1 cut(s)	693
BseGI	GGATG	1 cut(s)	494
BseLI	CCNNNNNNNGG	1 cut(s)	698
BseMI	GCAATG	2 cut(s)	342, 845
BseMII	CTCAG	5 cut(s)	211, 449, 558, 651, 696
BseNI	ACTGG	1 cut(s)	916
BseRI	GAGGAG	1 cut(s)	354
BseSI	GKGCMC	1 cut(s)	704
BseXI	GCAGC	4 cut(s)	148, 342, 445, 557
BsgI	GTGCAG	1 cut(s)	341
BshFI	GGCC	4 cut(s)	107, 296, 702, 722
BslI	CCNNNNNNNGG	1 cut(s)	698
BsmI	GAATGC	2 cut(s)	319, 940
BsnI	GGCC	4 cut(s)	107, 296, 702, 722
Bsp120I	GGGCCC	1 cut(s)	700
Bsp1286I	GDGCHC	1 cut(s)	704
Bsp1407I	TGTACA	1 cut(s)	855
Bsp143I	GATC	3 cut(s)	388, 582, 610
BspANI	GGCC	4 cut(s)	107, 296, 702, 722
BspCNI	CTCAG	5 cut(s)	210, 448, 559, 652, 697
BspLI	GGNNCC	6 cut(s)	17, 106, 205, 307, 701, 702
BspMAI	CTGCAG	1 cut(s)	463
BspPI	GGATC	2 cut(s)	383, 605
BsrDI	GCAATG	2 cut(s)	342, 845
BsrGI	TGTACA	1 cut(s)	855
BsrI	ACTGG	1 cut(s)	916
BssMI	GATC	3 cut(s)	388, 582, 610
Bst2UI	CCWGG	1 cut(s)	693
Bst4CI	ACNGT	2 cut(s)	242, 292
BstAUI	TGTACA	1 cut(s)	855
BstC8I	GCNNGC	2 cut(s)	114, 564
BstDEI	CTNAG	7 cut(s)	197, 435, 567, 579, 660, 705, 713
BstEII	GGTNACC	1 cut(s)	917
BstF5I	GGATG	1 cut(s)	494
BstHHI	GCGC	1 cut(s)	852
BstKTI	GATC	3 cut(s)	391, 585, 613
BstMBI	GATC	3 cut(s)	388, 582, 610
BstMWI	GCNNNNNNNGC	5 cut(s)	113, 149, 158, 323, 464
BstNI	CCWGG	1 cut(s)	693
BstNSI	RCATGY	1 cut(s)	856
BstPI	GGTNACC	1 cut(s)	917
BstSCI	CCNGG	1 cut(s)	691
BstSFI	CTRYAG	2 cut(s)	238, 459
BstSLI	GKGCMC	1 cut(s)	704
BstV1I	GCAGC	4 cut(s)	148, 342, 445, 557
BstV2I	GAAGAC	1 cut(s)	393
BstX2I	RGATCY	2 cut(s)	388, 582
BstYI	RGATCY	2 cut(s)	388, 582
Bsu36I	CCTNAGG	1 cut(s)	705
BsuRI	GGCC	4 cut(s)	107, 296, 702, 722
BtsCI	GGATG	1 cut(s)	494
BtsIMutI	CAGTG	4 cut(s)	205, 247, 297, 630
Cac8I	GCNNGC	2 cut(s)	114, 564
CfoI	GCGC	1 cut(s)	852
Cfr13I	GGNCC	4 cut(s)	105, 305, 700, 701
Csp6I	GTAC	3 cut(s)	638, 816, 856
CviAII	CATG	7 cut(s)	56, 109, 277, 329, 683, 736, 853
CviQI	GTAC	3 cut(s)	638, 816, 856
DdeI	CTNAG	7 cut(s)	197, 435, 567, 579, 660, 705, 713
DpnI	GATC	3 cut(s)	390, 584, 612
DpnII	GATC	3 cut(s)	388, 582, 610
EaeI	YGGCCR	2 cut(s)	294, 720
Eco24I	GRGCYC	1 cut(s)	704
Eco47I	GGWCC	1 cut(s)	305
Eco57I	CTGAAG	1 cut(s)	392
Eco81I	CCTNAGG	1 cut(s)	705
Eco91I	GGTNACC	1 cut(s)	917
EcoO109I	RGGNCCY	2 cut(s)	700, 701
EcoO65I	GGTNACC	1 cut(s)	917
EcoRI	GAATTC	2 cut(s)	178, 229
EcoRII	CCWGG	1 cut(s)	691
EcoT38I	GRGCYC	1 cut(s)	704
FaeI	CATG	7 cut(s)	59, 112, 280, 332, 686, 739, 856
FatI	CATG	7 cut(s)	55, 108, 276, 328, 682, 735, 852
Fnu4HI	GCNGC	4 cut(s)	162, 356, 459, 546
FokI	GGATG	1 cut(s)	501
FriOI	GRGCYC	1 cut(s)	704
Fsp4HI	GCNGC	4 cut(s)	162, 356, 459, 546
FspBI	CTAG	2 cut(s)	666, 780
FspI	TGCGCA	1 cut(s)	851
GlaI	GCGC	1 cut(s)	851
GluI	GCNGC	4 cut(s)	162, 356, 459, 546
HaeIII	GGCC	4 cut(s)	107, 296, 702, 722
HhaI	GCGC	1 cut(s)	852
Hin1II	CATG	7 cut(s)	59, 112, 280, 332, 686, 739, 856
Hin6I	GCGC	1 cut(s)	850
HinP1I	GCGC	1 cut(s)	850
HinfI	GANTC	3 cut(s)	273, 662, 791
Hpy166II	GTNNAC	1 cut(s)	858
Hpy188I	TCNGA	4 cut(s)	184, 438, 453, 621
Hpy188III	TCNNGA	1 cut(s)	608
Hpy8I	GTNNAC	1 cut(s)	858
HpyAV	CCTTC	2 cut(s)	198, 277
HpyCH4III	ACNGT	2 cut(s)	242, 292
HpyCH4IV	ACGT	1 cut(s)	574
HpyCH4V	TGCA	9 cut(s)	221, 332, 347, 358, 380, 461, 506, 545, 832
HpyF10VI	GCNNNNNNNGC	5 cut(s)	113, 149, 158, 323, 464
HpyF3I	CTNAG	7 cut(s)	197, 435, 567, 579, 660, 705, 713
HpySE526I	ACGT	1 cut(s)	574
Hsp92II	CATG	7 cut(s)	59, 112, 280, 332, 686, 739, 856
HspAI	GCGC	1 cut(s)	850
Kzo9I	GATC	3 cut(s)	388, 582, 610
LmnI	GCTCC	3 cut(s)	21, 59, 900
Lsp1109I	GCAGC	4 cut(s)	148, 342, 445, 557
MaeI	CTAG	2 cut(s)	666, 780
MaeII	ACGT	1 cut(s)	574
MaeIII	GTNAC	3 cut(s)	319, 382, 917
MalI	GATC	3 cut(s)	390, 584, 612
MboI	GATC	3 cut(s)	388, 582, 610
MboII	GAAGA	3 cut(s)	182, 393, 671
MflI	RGATCY	2 cut(s)	388, 582
MhlI	GDGCHC	1 cut(s)	704
MlsI	TGGCCA	2 cut(s)	296, 722
MluCI	AATT	9 cut(s)	89, 121, 178, 229, 300, 501, 724, 884, 924
MluNI	TGGCCA	2 cut(s)	296, 722
MlyI	GAGTC	1 cut(s)	671
MnlI	CCTC	8 cut(s)	61, 256, 375, 490, 609, 700, 815, 888
Mox20I	TGGCCA	2 cut(s)	296, 722
MroXI	GAANNNNTTC	1 cut(s)	938
MscI	TGGCCA	2 cut(s)	296, 722
MseI	TTAA	3 cut(s)	39, 645, 656
Msp20I	TGGCCA	2 cut(s)	296, 722
MspR9I	CCNGG	1 cut(s)	693
Mva1269I	GAATGC	2 cut(s)	319, 940
MvaI	CCWGG	1 cut(s)	693
MwoI	GCNNNNNNNGC	5 cut(s)	113, 149, 158, 323, 464
NdeII	GATC	3 cut(s)	388, 582, 610
NlaIII	CATG	7 cut(s)	59, 112, 280, 332, 686, 739, 856
NlaIV	GGNNCC	6 cut(s)	17, 106, 205, 307, 701, 702
NsbI	TGCGCA	1 cut(s)	851
NspI	RCATGY	1 cut(s)	856
PctI	GAATGC	2 cut(s)	319, 940
PdmI	GAANNNNTTC	1 cut(s)	938
PfeI	GAWTC	2 cut(s)	273, 791
PkrI	GCNGC	4 cut(s)	163, 357, 460, 547
PleI	GAGTC	1 cut(s)	670
PpsI	GAGTC	1 cut(s)	670
Psp1406I	AACGTT	1 cut(s)	574
Psp6I	CCWGG	1 cut(s)	691
PspEI	GGTNACC	1 cut(s)	917
PspGI	CCWGG	1 cut(s)	691
PspN4I	GGNNCC	6 cut(s)	17, 106, 205, 307, 701, 702
PspOMI	GGGCCC	1 cut(s)	700
PspPI	GGNCC	4 cut(s)	105, 305, 700, 701
PstI	CTGCAG	1 cut(s)	463
PsuI	RGATCY	2 cut(s)	388, 582
RsaI	GTAC	3 cut(s)	639, 817, 857
RsaNI	GTAC	3 cut(s)	638, 816, 856
SaqAI	TTAA	3 cut(s)	39, 645, 656
SatI	GCNGC	4 cut(s)	162, 356, 459, 546
Sau3AI	GATC	3 cut(s)	388, 582, 610
Sau96I	GGNCC	4 cut(s)	105, 305, 700, 701
ScaI	AGTACT	1 cut(s)	817
SchI	GAGTC	1 cut(s)	671
ScrFI	CCNGG	1 cut(s)	693
SduI	GDGCHC	1 cut(s)	704
SfcI	CTRYAG	2 cut(s)	238, 459
SinI	GGWCC	1 cut(s)	305
Sse9I	AATT	9 cut(s)	89, 121, 178, 229, 300, 501, 724, 884, 924
SspMI	CTAG	2 cut(s)	666, 780
StyD4I	CCNGG	1 cut(s)	691
TaaI	ACNGT	2 cut(s)	242, 292
TaiI	ACGT	1 cut(s)	577
TaqI	TCGA	1 cut(s)	893
TasI	AATT	9 cut(s)	89, 121, 178, 229, 300, 501, 724, 884, 924
TatI	WGTACW	3 cut(s)	637, 815, 855
TfiI	GAWTC	2 cut(s)	273, 791
Tru1I	TTAA	3 cut(s)	39, 645, 656
Tru9I	TTAA	3 cut(s)	39, 645, 656
TscAI	CASTG	4 cut(s)	205, 247, 297, 637
TseI	GCWGC	4 cut(s)	161, 355, 458, 545
TspDTI	ATGAA	3 cut(s)	17, 265, 671
TspRI	CASTG	4 cut(s)	205, 247, 297, 637
VpaK11BI	GGWCC	1 cut(s)	305
XapI	RAATTY	4 cut(s)	89, 178, 229, 884
XceI	RCATGY	1 cut(s)	856
XmnI	GAANNNNTTC	1 cut(s)	938
XspI	CTAG	2 cut(s)	666, 780
ZrmI	AGTACT	1 cut(s)	817

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.