Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002701

Physical Location & Seq

Genomic Coordinates Forward (+)

4906187 .. 4907855

Gene Structure 1669 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0062700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGCAGACAGCATCAGCTTGCGCAATCAAATTTCCACCTTGAGGCAATCTTTCTTTGATGAGGGAATGCTTGACAAGCACTTTGTCCAACTCGAAGAGTTGGAAGAAGAGAATCCTCACTTCGCTGAGGAGGTGATGACCATGTTTTTCAGGGACTCTACCAAACTGATAGCTACTGTGGAGCATGCTCTCCAAACATCACCCTATGATCTCCCACAGATAGATCAATATCTCCATCAGCTCAAAGGTAGCAGCTCCAGCGTTGGTGCTGCCAAGGTGTGGAGTGAAATAAATAAACTGAGGGCACTTCTGAAAGATGGAGAAATGGAGAGATTTTGGACTCAGTTTTTTCAAGTCAAAAATGAGCATGATAAGCTCAAAGAAAATCTTGGACCCTACTTTCAGATGCTCAGGCAACTTGATCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007267 GO:0008066 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009682 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009864 GO:0009867 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0031347 GO:0031349 GO:0032870 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0042742 GO:0043200 GO:0043207 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046873 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071395 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0080134 GO:0098542 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

142

Amino Acids

16.66

Weight (kDa)

5.07

Isoelectric Point (pI)

38.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hpt	PF01627	44 - 128	3.2e-11	Hpt domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002701)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10191 FvH4_1g10191 FvH4_1g10191 FvH4_1g10191 FvH4_1g10191 FvH4_1g10191
malus_domestica	MD02G1114100.v1.1 MD15G1229200.v1.1
prunus_persica	Prupe.7G106900_v2.0.a1 Prupe.7G184200_v2.0.a1 Prupe.7G184200_v2.0.a1 Prupe.7G184200_v2.0.a1 Prupe.7G184200_v2.0.a1 Prupe.7G184200_v2.0.a1 Prupe.7G184600_v2.0.a1 Prupe.7G184600_v2.0.a1 Prupe.7G184600_v2.0.a1 Prupe.7G184600_v2.0.a1 Prupe.7G223100_v2.0.a1 Prupe.7G223100_v2.0.a1 Prupe.7G223100_v2.0.a1 Prupe.7G223100_v2.0.a1 Prupe.7G223100_v2.0.a1 Prupe.7G223100_v2.0.a1 Prupe.7G223100_v2.0.a1 Prupe.7G223100_v2.0.a1
pyrus_communis	pycom02g08900
rosa_chinensis	RchiOBHm_Chr2g0096991
rosa_laevigata	RLG00000016690
rosa_multiflora	Rmu_co8480363.1_g000001 Rmu_sc0005782.1_g000006
rosa_roxburghii	Rroxscaffold_2G00145100
rosa_rugosa	Rorug02G0062600 Rorug02G0062700
rosa_samantha	Rh2AG110500 Rh2BG112300 Rh2CG114400 Rh2DG113600
rosa_wichuraiana	Rw2G008550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	23
AccB7I	CCANNNNNTGG	1 cut(s)	279
AclWI	GGATC	1 cut(s)	416
AcsI	RAATTY	1 cut(s)	30
AfiI	CCNNNNNNNGG	2 cut(s)	42, 279
AgsI	TTSAA	1 cut(s)	353
AluBI	AGCT	5 cut(s)	18, 173, 241, 255, 376
AluI	AGCT	5 cut(s)	18, 173, 241, 255, 376
AlwI	GGATC	1 cut(s)	416
ApeKI	GCWGC	2 cut(s)	252, 269
ApoI	RAATTY	1 cut(s)	30
ArsI	GACNNNNNNTTYG	2 cut(s)	65, 97
AspLEI	GCGC	1 cut(s)	24
AspS9I	GGNCC	1 cut(s)	392
AsuHPI	GGTGA	2 cut(s)	145, 192
AvaII	GGWCC	1 cut(s)	392
BaeGI	GKGCMC	1 cut(s)	307
BbvCI	CCTCAGC	1 cut(s)	126
BbvI	GCAGC	2 cut(s)	256, 264
BccI	CCATC	2 cut(s)	243, 311
BisI	GCNGC	2 cut(s)	253, 270
BlsI	GCNGC	2 cut(s)	254, 271
Bme18I	GGWCC	1 cut(s)	392
BmgT120I	GGNCC	1 cut(s)	392
BmiI	GGNNCC	1 cut(s)	394
BmsI	GCATC	2 cut(s)	21, 396
BpmI	CTGGAG	1 cut(s)	241
Bpu10I	CCTNAGC	2 cut(s)	126, 410
BpuEI	CTTGAG	1 cut(s)	61
BsaBI	GATNNNNATC	1 cut(s)	228
BsaJI	CCNNGG	1 cut(s)	273
Bsc4I	CCNNNNNNNGG	2 cut(s)	42, 279
Bse8I	GATNNNNATC	1 cut(s)	228
BseDI	CCNNGG	1 cut(s)	273
BseJI	GATNNNNATC	1 cut(s)	228
BseLI	CCNNNNNNNGG	2 cut(s)	42, 279
BseMII	CTCAG	4 cut(s)	117, 290, 356, 424
BseRI	GAGGAG	1 cut(s)	143
BseSI	GKGCMC	1 cut(s)	307
BseXI	GCAGC	2 cut(s)	256, 264
BslFI	GGGAC	1 cut(s)	167
BslI	CCNNNNNNNGG	2 cut(s)	42, 279
BsmFI	GGGAC	1 cut(s)	167
BsmI	GAATGC	1 cut(s)	72
Bsp1286I	GDGCHC	1 cut(s)	307
Bsp143I	GATC	3 cut(s)	208, 223, 421
BspCNI	CTCAG	4 cut(s)	118, 291, 355, 423
BspLI	GGNNCC	1 cut(s)	394
BspPI	GGATC	1 cut(s)	416
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	3 cut(s)	208, 223, 421
BssT1I	CCWWGG	1 cut(s)	273
Bst4CI	ACNGT	1 cut(s)	178
Bst6I	CTCTTC	2 cut(s)	90, 102
BstC8I	GCNNGC	2 cut(s)	20, 186
BstDEI	CTNAG	4 cut(s)	126, 299, 342, 410
BstHHI	GCGC	1 cut(s)	24
BstKTI	GATC	3 cut(s)	211, 226, 424
BstMBI	GATC	3 cut(s)	208, 223, 421
BstMWI	GCNNNNNNNGC	3 cut(s)	76, 258, 373
BstNSI	RCATGY	1 cut(s)	188
BstSLI	GKGCMC	1 cut(s)	307
BstV1I	GCAGC	2 cut(s)	256, 264
Cac8I	GCNNGC	2 cut(s)	20, 186
CfoI	GCGC	1 cut(s)	24
Cfr13I	GGNCC	1 cut(s)	392
CviAII	CATG	3 cut(s)	142, 185, 368
CviJI	RGCY	5 cut(s)	18, 173, 241, 255, 376
CviKI_1	RGCY	5 cut(s)	18, 173, 241, 255, 376
DdeI	CTNAG	4 cut(s)	126, 299, 342, 410
DpnI	GATC	3 cut(s)	210, 225, 423
DpnII	GATC	3 cut(s)	208, 223, 421
Eam1104I	CTCTTC	2 cut(s)	90, 102
EarI	CTCTTC	2 cut(s)	90, 102
Eco130I	CCWWGG	1 cut(s)	273
Eco47I	GGWCC	1 cut(s)	392
EcoT14I	CCWWGG	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	273
FaeI	CATG	3 cut(s)	145, 188, 371
FaiI	YATR	4 cut(s)	143, 186, 207, 369
FalI	AAGNNNNNCTT	2 cut(s)	372, 404
FaqI	GGGAC	1 cut(s)	167
FatI	CATG	3 cut(s)	141, 184, 367
Fnu4HI	GCNGC	2 cut(s)	253, 270
Fsp4HI	GCNGC	2 cut(s)	253, 270
FspI	TGCGCA	1 cut(s)	23
GlaI	GCGC	1 cut(s)	23
GluI	GCNGC	2 cut(s)	253, 270
GsuI	CTGGAG	1 cut(s)	241
HhaI	GCGC	1 cut(s)	24
Hin1II	CATG	3 cut(s)	145, 188, 371
Hin6I	GCGC	1 cut(s)	22
HinP1I	GCGC	1 cut(s)	22
HinfI	GANTC	3 cut(s)	112, 155, 340
HphI	GGTGA	2 cut(s)	145, 192
Hpy188I	TCNGA	2 cut(s)	312, 405
HpyCH4III	ACNGT	1 cut(s)	178
HpyF10VI	GCNNNNNNNGC	3 cut(s)	76, 258, 373
HpyF3I	CTNAG	4 cut(s)	126, 299, 342, 410
Hsp92II	CATG	3 cut(s)	145, 188, 371
HspAI	GCGC	1 cut(s)	22
Kzo9I	GATC	3 cut(s)	208, 223, 421
LmnI	GCTCC	2 cut(s)	181, 260
LpnPI	CCDG	3 cut(s)	136, 271, 397
Lsp1109I	GCAGC	2 cut(s)	256, 264
LweI	GCATC	2 cut(s)	21, 396
MalI	GATC	3 cut(s)	210, 225, 423
MboI	GATC	3 cut(s)	208, 223, 421
MboII	GAAGA	3 cut(s)	107, 116, 119
MhlI	GDGCHC	1 cut(s)	307
MluCI	AATT	1 cut(s)	30
MlyI	GAGTC	2 cut(s)	149, 334
MmeI	TCCRAC	2 cut(s)	81, 112
MnlI	CCTC	6 cut(s)	36, 55, 121, 124, 126, 294
Mva1269I	GAATGC	1 cut(s)	72
MwoI	GCNNNNNNNGC	3 cut(s)	76, 258, 373
NdeII	GATC	3 cut(s)	208, 223, 421
NlaIII	CATG	3 cut(s)	145, 188, 371
NlaIV	GGNNCC	1 cut(s)	394
NsbI	TGCGCA	1 cut(s)	23
NspI	RCATGY	1 cut(s)	188
PaeI	GCATGC	1 cut(s)	188
PctI	GAATGC	1 cut(s)	72
PfeI	GAWTC	1 cut(s)	112
PflMI	CCANNNNNTGG	1 cut(s)	279
PkrI	GCNGC	2 cut(s)	254, 271
PleI	GAGTC	2 cut(s)	149, 334
PpsI	GAGTC	2 cut(s)	149, 334
PspN4I	GGNNCC	1 cut(s)	394
PspPI	GGNCC	1 cut(s)	392
SatI	GCNGC	2 cut(s)	253, 270
Sau3AI	GATC	3 cut(s)	208, 223, 421
Sau96I	GGNCC	1 cut(s)	392
SchI	GAGTC	2 cut(s)	149, 334
SduI	GDGCHC	1 cut(s)	307
SetI	ASST	9 cut(s)	20, 41, 135, 175, 243, 250, 257, 279, 378
SfaNI	GCATC	2 cut(s)	21, 396
SinI	GGWCC	1 cut(s)	392
SmlI	CTYRAG	1 cut(s)	40
SmoI	CTYRAG	1 cut(s)	40
SphI	GCATGC	1 cut(s)	188
Sse9I	AATT	1 cut(s)	30
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	1 cut(s)	178
TaqI	TCGA	1 cut(s)	93
TasI	AATT	1 cut(s)	30
TfiI	GAWTC	1 cut(s)	112
TseI	GCWGC	2 cut(s)	252, 269
Van91I	CCANNNNNTGG	1 cut(s)	279
VpaK11BI	GGWCC	1 cut(s)	392
XapI	RAATTY	1 cut(s)	30
XceI	RCATGY	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.