Rmu_co8494203.1_g000001

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8494203.1
Physical Location & Seq
Reverse (-)
1 .. 2576
2576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8494203.1_g000001.1.cds

Sequence Viewer

Length: 1342 bp
atggaagccatgattagagggtatgcaaagtatattaaaggggacacaggagaagaagaagaagaagaaaaacctgtcccaaatgaagaatgccatcataatgtagctgcatggcacaatgttgagcacccagaggagaggataaagttttggtccgatcctgatacagagctaaaactggctaaagatactggcatcagtgtcttccgaatgggaatagattggtcacgaatcatgccagaggagccgctcaatgggcttacaaaaactgttaactatgctgcattggagcgatacaagtggatcatcggcagggttcgctcatacggaatgaaggtgatgttgactctcttccatcactcattgccaccatgggctggggagtatggagggtggaaagtggaaaagacagttgattatttcttggatttcacaaggcttgttgttgacagtgtatcagatatgatagactattgggtaccattcaatgagcctcatgtcttctgtatgcttacctattgtgcgggtgcatggcctggtggccatcctgacatgctggaggttgcgacttctgctctaccaactggtgttttcaaacaggccatgcattggatggccattgcacacttaaaggcctatgactatatccacgaaaaaagtacctcatccaagccattagttggagtggcacaccatgtctcattcatgcggccatatggtctctttgatgttcctgctgttacactggccaactccatgactgtcttcccatatgtggatagtatttctgacaagctggattttattggcataaactactatggacaggaagtggtgtgtggtgctggactgaagctagtagagactgatgaatatagtgaatccggacgtgggatatacccagatggcttgtaccgcatgctgcttcagttcaatgatagatataaacatctaaatgtacccttcataattactgaaaatggggtatctgatgagacagatgtaatccgtcggccttacctgctagagcatttgctcgctgttcatgcagccaagatcatgggtgtccgtgtgcttggtttcctgttttggactatttctgataactgggagtgggcagatgggtatggtcccaagtttggactggtagcagttgatcgggccagagatcttgcccgggttccacgtccttcataccatctatttactaaggtggtgacaacaggtaaaattacacgttatgaccgggcacgtgcatggcaccaactccaaatatctgctagagaaaagaaaatgcgatccttttatcgggctgttaataaagatggcttgatgtatgcag

Protein Analysis

447

Amino Acids

51.33

Weight (kDa)

6.23

Isoelectric Point (pI)

31.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06510 AT3G06510
fragaria_vesca FvH4_4g20710
malus_domestica MD16G1148600.v1.1
prunus_persica Prupe.1G112100_v2.0.a1 Prupe.1G112100_v2.0.a1 Prupe.1G112100_v2.0.a1
pyrus_communis pycom16g12690
rosa_chinensis RchiOBHm_Chr4g0426131
rosa_laevigata RLG00000007317
rosa_multiflora Rmu_co8494203.1_g000001
rosa_roxburghii Rroxscaffold_5G00368120
rosa_rugosa Rorug04G0209300
rosa_samantha Rh4AG265800 Rh4CG284800 Rh4DG268000
rosa_wichuraiana Rw4G022970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1029
Acc65I GGTACC 1 cut(s) 478
AccB1I GGYRCC 2 cut(s) 478, 1260
AccB7I CCANNNNNTGG 3 cut(s) 377, 609, 680
AccBSI CCGCTC 1 cut(s) 250
AccIII TCCGGA 1 cut(s) 884
AciI CCGC 4 cut(s) 248, 524, 709, 916
AclWI GGATC 3 cut(s) 152, 311, 1293
AcoI YGGCCR 4 cut(s) 541, 615, 710, 747
AcuI CTGAAG 2 cut(s) 872, 911
AcvI CACGTG 1 cut(s) 1253
AfaI GTAC 4 cut(s) 480, 661, 914, 960
AfiI CCNNNNNNNGG 8 cut(s) 254, 377, 609, 680, 775, 891, 1139, 1308
AflIII ACRYGT 1 cut(s) 1235
AgsI TTSAA 3 cut(s) 487, 595, 934
AjiI CACGTC 2 cut(s) 890, 1187
AjnI CCWGG 1 cut(s) 535
AluBI AGCT 4 cut(s) 107, 172, 796, 856
AluI AGCT 4 cut(s) 107, 172, 796, 856
Alw21I GWGCWC 1 cut(s) 129
Alw26I GTCTC 4 cut(s) 703, 725, 857, 989
AlwI GGATC 3 cut(s) 152, 311, 1293
Ama87I CYCGRG 1 cut(s) 1176
Aor13HI TCCGGA 1 cut(s) 884
AoxI GGCC 9 cut(s) 533, 541, 600, 615, 633, 710, 747, 1013, 1161
ApeKI GCWGC 4 cut(s) 107, 281, 922, 1049
Asp718I GGTACC 1 cut(s) 478
AspS9I GGNCC 3 cut(s) 153, 1130, 1161
AsuC2I CCSGG 3 cut(s) 1177, 1178, 1247
AsuHPI GGTGA 2 cut(s) 349, 1228
AvaI CYCGRG 1 cut(s) 1176
AvaII GGWCC 2 cut(s) 153, 1130
BaeGI GKGCMC 1 cut(s) 1252
BalI TGGCCA 3 cut(s) 543, 617, 749
BanI GGYRCC 2 cut(s) 478, 1260
BbrPI CACGTG 1 cut(s) 1253
BbsI GAAGAC 3 cut(s) 196, 493, 757
Bbv12I GWGCWC 1 cut(s) 129
BbvI GCAGC 4 cut(s) 94, 268, 909, 1061
BccI CCATC 8 cut(s) 102, 363, 552, 607, 899, 1115, 1206, 1319
BciT130I CCWGG 1 cut(s) 537
BcnI CCSGG 3 cut(s) 1177, 1178, 1247
BcoDI GTCTC 4 cut(s) 703, 725, 857, 989
BfaI CTAG 3 cut(s) 857, 1025, 1281
BfuAI ACCTGC 1 cut(s) 1029
BglII AGATCT 1 cut(s) 1168
BisI GCNGC 6 cut(s) 108, 248, 282, 710, 923, 1050
BlsI GCNGC 6 cut(s) 109, 249, 283, 711, 924, 1051
Bme1390I CCNGG 4 cut(s) 537, 1177, 1178, 1247
Bme18I GGWCC 2 cut(s) 153, 1130
BmeT110I CYCGRG 1 cut(s) 1176
BmgBI CACGTC 2 cut(s) 890, 1187
BmgT120I GGNCC 3 cut(s) 153, 1130, 1161
BmiI GGNNCC 5 cut(s) 246, 480, 1132, 1182, 1262
BmrFI CCNGG 4 cut(s) 537, 1177, 1178, 1247
BmrI ACTGGG 1 cut(s) 1117
BmsI GCATC 1 cut(s) 204
BmuI ACTGGG 1 cut(s) 1117
BpiI GAAGAC 3 cut(s) 196, 493, 757
BpmI CTGGAG 1 cut(s) 578
BpuMI CCSGG 3 cut(s) 1177, 1178, 1247
BsaAI YACGTR 1 cut(s) 1253
BsaI GGTCTC 1 cut(s) 725
BsaJI CCNNGG 2 cut(s) 371, 1176
BsaWI WCCGGW 1 cut(s) 884
Bsc4I CCNNNNNNNGG 8 cut(s) 254, 377, 609, 680, 775, 891, 1139, 1308
Bse1I ACTGG 6 cut(s) 183, 196, 589, 750, 1112, 1149
Bse3DI GCAATG 2 cut(s) 362, 618
BseAI TCCGGA 1 cut(s) 884
BseBI CCWGG 1 cut(s) 537
BseDI CCNNGG 2 cut(s) 371, 1176
BseGI GGATG 3 cut(s) 544, 618, 665
BseLI CCNNNNNNNGG 8 cut(s) 254, 377, 609, 680, 775, 891, 1139, 1308
BseMI GCAATG 2 cut(s) 362, 618
BseNI ACTGG 6 cut(s) 183, 196, 589, 750, 1112, 1149
BseRI GAGGAG 2 cut(s) 149, 257
BseSI GKGCMC 1 cut(s) 1252
BseXI GCAGC 4 cut(s) 94, 268, 909, 1061
BseYI CCCAGC 1 cut(s) 377
BshFI GGCC 9 cut(s) 535, 543, 602, 617, 635, 712, 749, 1015, 1163
BshNI GGYRCC 2 cut(s) 478, 1260
BsiHKAI GWGCWC 1 cut(s) 129
BsiHKCI CYCGRG 1 cut(s) 1176
BsiSI CCGG 3 cut(s) 885, 1177, 1246
BslFI GGGAC 3 cut(s) 56, 62, 1116
BslI CCNNNNNNNGG 8 cut(s) 254, 377, 609, 680, 775, 891, 1139, 1308
BsmAI GTCTC 4 cut(s) 703, 725, 857, 989
BsmFI GGGAC 3 cut(s) 56, 62, 1116
BsmI GAATGC 1 cut(s) 95
BsnI GGCC 9 cut(s) 535, 543, 602, 617, 635, 712, 749, 1015, 1163
Bso31I GGTCTC 1 cut(s) 725
BsoBI CYCGRG 1 cut(s) 1176
Bsp1286I GDGCHC 2 cut(s) 129, 1252
Bsp13I TCCGGA 1 cut(s) 884
Bsp143I GATC 6 cut(s) 157, 303, 1056, 1156, 1168, 1298
Bsp19I CCATGG 1 cut(s) 371
BspACI CCGC 4 cut(s) 248, 524, 709, 916
BspANI GGCC 9 cut(s) 535, 543, 602, 617, 635, 712, 749, 1015, 1163
BspEI TCCGGA 1 cut(s) 884
BspLI GGNNCC 5 cut(s) 246, 480, 1132, 1182, 1262
BspMI ACCTGC 1 cut(s) 1029
BspPI GGATC 3 cut(s) 152, 311, 1293
BspT107I GGYRCC 2 cut(s) 478, 1260
BspTNI GGTCTC 1 cut(s) 725
BsrBI CCGCTC 1 cut(s) 250
BsrDI GCAATG 2 cut(s) 362, 618
BsrI ACTGG 6 cut(s) 183, 196, 589, 750, 1112, 1149
BssECI CCNNGG 2 cut(s) 371, 1176
BssMI GATC 6 cut(s) 157, 303, 1056, 1156, 1168, 1298
BssT1I CCWWGG 1 cut(s) 371
Bst2UI CCWGG 1 cut(s) 537
Bst4CI ACNGT 4 cut(s) 271, 412, 452, 763
Bst6I CTCTTC 1 cut(s) 356
BstBAI YACGTR 1 cut(s) 1253
BstC8I GCNNGC 2 cut(s) 920, 1038
BstDEI CTNAG 1 cut(s) 1209
BstDSI CCRYGG 1 cut(s) 371
BstF5I GGATG 3 cut(s) 544, 618, 665
BstKTI GATC 6 cut(s) 160, 306, 1059, 1159, 1171, 1301
BstMAI GTCTC 4 cut(s) 703, 725, 857, 989
BstMBI GATC 6 cut(s) 157, 303, 1056, 1156, 1168, 1298
BstMWI GCNNNNNNNGC 7 cut(s) 244, 256, 318, 572, 915, 1021, 1046
BstNI CCWGG 1 cut(s) 537
BstNSI RCATGY 2 cut(s) 556, 922
BstSCI CCNGG 4 cut(s) 535, 1175, 1176, 1245
BstSLI GKGCMC 1 cut(s) 1252
BstV1I GCAGC 4 cut(s) 94, 268, 909, 1061
BstV2I GAAGAC 3 cut(s) 196, 493, 757
BstX2I RGATCY 1 cut(s) 1168
BstXI CCANNNNNNTGG 1 cut(s) 1060
BstYI RGATCY 1 cut(s) 1168
BsuRI GGCC 9 cut(s) 535, 543, 602, 617, 635, 712, 749, 1015, 1163
BtgI CCRYGG 1 cut(s) 371
BtrI CACGTC 2 cut(s) 890, 1187
BtsCI GGATG 3 cut(s) 544, 618, 665
BtsIMutI CAGTG 3 cut(s) 205, 457, 743
BveI ACCTGC 1 cut(s) 1029
Cac8I GCNNGC 2 cut(s) 920, 1038
Cfr13I GGNCC 3 cut(s) 153, 1130, 1161
Cfr9I CCCGGG 1 cut(s) 1176
Csp6I GTAC 4 cut(s) 479, 660, 913, 959
CviQI GTAC 4 cut(s) 479, 660, 913, 959
DdeI CTNAG 1 cut(s) 1209
DpnI GATC 6 cut(s) 159, 305, 1058, 1158, 1170, 1300
DpnII GATC 6 cut(s) 157, 303, 1056, 1156, 1168, 1298
EaeI YGGCCR 4 cut(s) 541, 615, 710, 747
Eam1104I CTCTTC 1 cut(s) 356
EarI CTCTTC 1 cut(s) 356
Eco130I CCWWGG 1 cut(s) 371
Eco147I AGGCCT 1 cut(s) 635
Eco31I GGTCTC 1 cut(s) 725
Eco47I GGWCC 2 cut(s) 153, 1130
Eco57I CTGAAG 2 cut(s) 872, 911
Eco72I CACGTG 1 cut(s) 1253
Eco88I CYCGRG 1 cut(s) 1176
EcoRII CCWGG 1 cut(s) 535
EcoT14I CCWWGG 1 cut(s) 371
EcoT22I ATGCAT 1 cut(s) 609
ErhI CCWWGG 1 cut(s) 371
FaqI GGGAC 3 cut(s) 56, 62, 1116
FauI CCCGC 1 cut(s) 517
FauNDI CATATG 2 cut(s) 715, 772
Fnu4HI GCNGC 6 cut(s) 108, 248, 282, 710, 923, 1050
FokI GGATG 3 cut(s) 531, 625, 652
Fsp4HI GCNGC 6 cut(s) 108, 248, 282, 710, 923, 1050
FspBI CTAG 3 cut(s) 857, 1025, 1281
GluI GCNGC 6 cut(s) 108, 248, 282, 710, 923, 1050
GsaI CCCAGC 1 cut(s) 381
GsuI CTGGAG 1 cut(s) 578
HaeIII GGCC 9 cut(s) 535, 543, 602, 617, 635, 712, 749, 1015, 1163
HapII CCGG 3 cut(s) 885, 1177, 1246
HincII GTYRAC 3 cut(s) 274, 345, 448
HindII GTYRAC 3 cut(s) 274, 345, 448
HinfI GANTC 3 cut(s) 231, 346, 881
HpaI GTTAAC 1 cut(s) 274
HpaII CCGG 3 cut(s) 885, 1177, 1246
HphI GGTGA 2 cut(s) 349, 1228
Hpy166II GTNNAC 3 cut(s) 274, 345, 448
Hpy188I TCNGA 6 cut(s) 157, 209, 460, 790, 991, 1102
Hpy188III TCNNGA 4 cut(s) 161, 228, 548, 885
Hpy8I GTNNAC 3 cut(s) 274, 345, 448
Hpy99I CGWCG 1 cut(s) 1014
HpyAV CCTTC 3 cut(s) 328, 973, 1200
HpyCH4III ACNGT 4 cut(s) 271, 412, 452, 763
HpyCH4IV ACGT 4 cut(s) 889, 1186, 1237, 1252
HpyCH4V TGCA 9 cut(s) 26, 110, 284, 530, 607, 623, 1049, 1256, 1340
HpyF10VI GCNNNNNNNGC 7 cut(s) 244, 256, 318, 572, 915, 1021, 1046
HpyF3I CTNAG 1 cut(s) 1209
HpySE526I ACGT 4 cut(s) 889, 1186, 1237, 1252
Kpn2I TCCGGA 1 cut(s) 884
KpnI GGTACC 1 cut(s) 482
KspAI GTTAAC 1 cut(s) 274
Kzo9I GATC 6 cut(s) 157, 303, 1056, 1156, 1168, 1298
LmnI GCTCC 2 cut(s) 244, 289
Lsp1109I GCAGC 4 cut(s) 94, 268, 909, 1061
LweI GCATC 1 cut(s) 204
MaeI CTAG 3 cut(s) 857, 1025, 1281
MaeII ACGT 4 cut(s) 889, 1186, 1237, 1252
MaeIII GTNAC 3 cut(s) 225, 739, 1216
MalI GATC 6 cut(s) 159, 305, 1058, 1158, 1170, 1300
MbiI CCGCTC 1 cut(s) 250
MboI GATC 6 cut(s) 157, 303, 1056, 1156, 1168, 1298
MflI RGATCY 1 cut(s) 1168
MhlI GDGCHC 2 cut(s) 129, 1252
MlsI TGGCCA 3 cut(s) 543, 617, 749
MluCI AATT 2 cut(s) 969, 1230
MluNI TGGCCA 3 cut(s) 543, 617, 749
MlyI GAGTC 1 cut(s) 340
MmeI TCCRAC 1 cut(s) 661
MnlI CCTC 8 cut(s) 11, 127, 132, 235, 383, 504, 553, 673
Mox20I TGGCCA 3 cut(s) 543, 617, 749
Mph1103I ATGCAT 1 cut(s) 609
MroI TCCGGA 1 cut(s) 884
MscI TGGCCA 3 cut(s) 543, 617, 749
MseI TTAA 4 cut(s) 36, 273, 629, 1317
MslI CAYNNNNRTG 3 cut(s) 99, 954, 1255
Msp20I TGGCCA 3 cut(s) 543, 617, 749
MspI CCGG 3 cut(s) 885, 1177, 1246
MspR9I CCNGG 4 cut(s) 537, 1177, 1178, 1247
Mva1269I GAATGC 1 cut(s) 95
MvaI CCWGG 1 cut(s) 537
MwoI GCNNNNNNNGC 7 cut(s) 244, 256, 318, 572, 915, 1021, 1046
NciI CCSGG 3 cut(s) 1177, 1178, 1247
NcoI CCATGG 1 cut(s) 371
NdeI CATATG 2 cut(s) 715, 772
NdeII GATC 6 cut(s) 157, 303, 1056, 1156, 1168, 1298
NlaIV GGNNCC 5 cut(s) 246, 480, 1132, 1182, 1262
NmuCI GTSAC 2 cut(s) 225, 1216
NsiI ATGCAT 1 cut(s) 609
NspI RCATGY 2 cut(s) 556, 922
PaeI GCATGC 1 cut(s) 922
PceI AGGCCT 1 cut(s) 635
PctI GAATGC 1 cut(s) 95
PfeI GAWTC 2 cut(s) 231, 881
PflMI CCANNNNNTGG 3 cut(s) 377, 609, 680
PkrI GCNGC 6 cut(s) 109, 249, 283, 711, 924, 1051
PleI GAGTC 1 cut(s) 340
PmaCI CACGTG 1 cut(s) 1253
PmlI CACGTG 1 cut(s) 1253
PpsI GAGTC 1 cut(s) 340
Ppu21I YACGTR 1 cut(s) 1253
Psp6I CCWGG 1 cut(s) 535
PspCI CACGTG 1 cut(s) 1253
PspFI CCCAGC 1 cut(s) 377
PspGI CCWGG 1 cut(s) 535
PspN4I GGNNCC 5 cut(s) 246, 480, 1132, 1182, 1262
PspPI GGNCC 3 cut(s) 153, 1130, 1161
PsuI RGATCY 1 cut(s) 1168
RsaI GTAC 4 cut(s) 480, 661, 914, 960
RsaNI GTAC 4 cut(s) 479, 660, 913, 959
RseI CAYNNNNRTG 3 cut(s) 99, 954, 1255
SaqAI TTAA 4 cut(s) 36, 273, 629, 1317
SatI GCNGC 6 cut(s) 108, 248, 282, 710, 923, 1050
Sau3AI GATC 6 cut(s) 157, 303, 1056, 1156, 1168, 1298
Sau96I GGNCC 3 cut(s) 153, 1130, 1161
SchI GAGTC 1 cut(s) 340
ScrFI CCNGG 4 cut(s) 537, 1177, 1178, 1247
SduI GDGCHC 2 cut(s) 129, 1252
SfaNI GCATC 1 cut(s) 204
SinI GGWCC 2 cut(s) 153, 1130
SmaI CCCGGG 1 cut(s) 1178
SmiMI CAYNNNNRTG 3 cut(s) 99, 954, 1255
SphI GCATGC 1 cut(s) 922
Sse9I AATT 2 cut(s) 969, 1230
SseBI AGGCCT 1 cut(s) 635
SsiI CCGC 4 cut(s) 248, 524, 709, 916
SspMI CTAG 3 cut(s) 857, 1025, 1281
StuI AGGCCT 1 cut(s) 635
StyD4I CCNGG 4 cut(s) 535, 1175, 1176, 1245
StyI CCWWGG 1 cut(s) 371
TaaI ACNGT 4 cut(s) 271, 412, 452, 763
TaiI ACGT 4 cut(s) 892, 1189, 1240, 1255
TasI AATT 2 cut(s) 969, 1230
TauI GCSGC 2 cut(s) 250, 712
TfiI GAWTC 2 cut(s) 231, 881
Tru1I TTAA 4 cut(s) 36, 273, 629, 1317
Tru9I TTAA 4 cut(s) 36, 273, 629, 1317
TscAI CASTG 3 cut(s) 205, 457, 750
TseFI GTSAC 2 cut(s) 225, 1216
TseI GCWGC 4 cut(s) 107, 281, 922, 1049
Tsp45I GTSAC 2 cut(s) 225, 1216
TspDTI ATGAA 7 cut(s) 99, 347, 694, 885, 955, 1034, 1182
TspGWI ACGGA 3 cut(s) 342, 998, 1058
TspMI CCCGGG 1 cut(s) 1176
TspRI CASTG 3 cut(s) 205, 457, 750
Van91I CCANNNNNTGG 3 cut(s) 377, 609, 680
VpaK11BI GGWCC 2 cut(s) 153, 1130
XceI RCATGY 2 cut(s) 556, 922
XcmI CCANNNNNNNNNTGG 2 cut(s) 610, 1141
XmaI CCCGGG 1 cut(s) 1176
XspI CTAG 3 cut(s) 857, 1025, 1281
Zsp2I ATGCAT 1 cut(s) 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.