Rmu_sc0000021.1_g000005

Plant organelle RNA recognition domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000021.1
OG0016659
Physical Location & Seq
Forward (+)
32955 .. 34112
1158 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1158 bp
atgaaatggaagaaagactcgtactttgactccattgagcacatcgacaagtccatagtggttaaacccatcattaacctcaagaactgcattactgaagatcccaatggctgtatcccagtctatgaagtgtccaaaaggggtcttcaattagatgtacccatgaaggttgccaagtttttgaggaaatacccatcaatctttgaggagtttgctggtgaatacaatcatccctggtttagattgaccccagaagcagctgagattgatagggaggagaagagggtttatgaggattgtagggtggatttgaggtataggctgaaaaagttgattttgatgagcaaagaaaaggttttgcctttgaaaattattcaggggatggagtggtttttgggtttgcctgatgattttttgcactacccggaaaagaatctggatgggtcttttcggtttgtgacaatggaagatgggttagagggattagctgttgacagtggtgaaaaggtcttgtctgtcgtgcaaaggaatgcaatgaaaaaaggggtgtattctggagctccaacagaggcaattgagttcccgcttttcccttccaagggtttgaggttgaggaacaagattgaagattggttaaaggagtttcagaaacttccctatgtttcaccttatgaggatttttcacatttaccgccagatactgatgcatccgagaaacgagttgtggggcttcttcatgagttgctttgtctatttgttgagcattcagcagagaggaagaagctcaagtgtcttaagaagtatatgggactgccgcagaaagtgcacagagcatttgagagacatcctgggattttctatttgtcatttaagaacaagacttgtacggtaattcttaaagaggcttactgtgatgagtctgctattgagaagcatccacttttggaagtgaggaaaaagtatattagattgatgagggagtcggcagtgatcttgaagaataggagagtgaatggccggttggctggtggtgggaatatggagccagatttggatttggaacctaagattgaagacagaggagatggagggaatacagaggtggacttggatttggattctgagaatgaccaaagagatggagagtgttctcagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

385

Amino Acids

44.6

Weight (kDa)

6.55

Isoelectric Point (pI)

43.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PORR PF11955 4 - 328 5.1e-107 Plant organelle RNA recognition domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016659)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39120
fragaria_vesca FvH4_7g08660
malus_domestica MD01G1105000.v1.1
prunus_persica Prupe.2G210300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0343651
rosa_laevigata RLG00000028956
rosa_multiflora Rmu_sc0000021.1_g000005 Rmu_sc0007600.1_g000003
rosa_roxburghii Rroxscaffold_4G00310400
rosa_rugosa Rorug01G0168100 Rorug01G0168200
rosa_samantha Rh1AG184100 Rh1CG171000
rosa_wichuraiana Rw1G015260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 584, 692, 815
AclWI GGATC 1 cut(s) 95
AcoI YGGCCR 1 cut(s) 1015
AcuI CTGAAG 1 cut(s) 117
AfaI GTAC 3 cut(s) 23, 159, 886
AfiI CCNNNNNNNGG 2 cut(s) 598, 599
AflII CTTAAG 1 cut(s) 794
AgsI TTSAA 5 cut(s) 149, 367, 626, 997, 1073
AjnI CCWGG 2 cut(s) 233, 847
AjuI GAANNNNNNNTTGG 2 cut(s) 1004, 1036
AluBI AGCT 4 cut(s) 260, 488, 560, 784
AluI AGCT 4 cut(s) 260, 488, 560, 784
Alw21I GWGCWC 3 cut(s) 42, 562, 828
Alw26I GTCTC 1 cut(s) 835
Alw44I GTGCAC 1 cut(s) 824
AlwI GGATC 1 cut(s) 95
AlwNI CAGNNNCTG 1 cut(s) 701
AoxI GGCC 1 cut(s) 1015
ApaLI GTGCAC 1 cut(s) 824
ApeKI GCWGC 1 cut(s) 257
ArsI GACNNNNNNTTYG 2 cut(s) 8, 40
AsuC2I CCSGG 1 cut(s) 425
AsuHPI GGTGA 3 cut(s) 230, 512, 657
BaeGI GKGCMC 1 cut(s) 828
BanII GRGCYC 1 cut(s) 562
BbsI GAAGAC 2 cut(s) 137, 1080
Bbv12I GWGCWC 3 cut(s) 42, 562, 828
BbvI GCAGC 1 cut(s) 269
BccI CCATC 7 cut(s) 77, 202, 376, 434, 464, 1079, 1133
BciT130I CCWGG 2 cut(s) 235, 849
BciVI GTATCC 1 cut(s) 125
BcnI CCSGG 1 cut(s) 425
BcoDI GTCTC 1 cut(s) 835
BfrI CTTAAG 1 cut(s) 794
BfuI GTATCC 1 cut(s) 125
BisI GCNGC 2 cut(s) 258, 815
BlsI GCNGC 2 cut(s) 259, 816
Bme1390I CCNGG 3 cut(s) 235, 425, 849
BmiI GGNNCC 2 cut(s) 1044, 1062
BmrFI CCNGG 3 cut(s) 235, 425, 849
BmrI ACTGGG 1 cut(s) 113
BmsI GCATC 3 cut(s) 694, 716, 943
BmuI ACTGGG 1 cut(s) 113
BpiI GAAGAC 2 cut(s) 137, 1080
BpmI CTGGAG 1 cut(s) 576
BpuEI CTTGAG 2 cut(s) 65, 770
BpuMI CCSGG 1 cut(s) 425
BsaJI CCNNGG 3 cut(s) 233, 597, 848
BsaXI ACNNNNNCTCC 2 cut(s) 14, 44
Bsc4I CCNNNNNNNGG 2 cut(s) 598, 599
Bse118I RCCGGY 1 cut(s) 1017
Bse1I ACTGG 1 cut(s) 119
Bse3DI GCAATG 1 cut(s) 540
BseBI CCWGG 2 cut(s) 235, 849
BseDI CCNNGG 3 cut(s) 233, 597, 848
BseGI GGATG 6 cut(s) 229, 387, 445, 707, 844, 934
BseLI CCNNNNNNNGG 2 cut(s) 598, 599
BseMI GCAATG 1 cut(s) 540
BseMII CTCAG 2 cut(s) 252, 1113
BseNI ACTGG 1 cut(s) 119
BseRI GAGGAG 3 cut(s) 221, 290, 1095
BseSI GKGCMC 1 cut(s) 828
BseXI GCAGC 1 cut(s) 269
BshFI GGCC 1 cut(s) 1017
BsiHKAI GWGCWC 3 cut(s) 42, 562, 828
BsiSI CCGG 2 cut(s) 425, 1018
BslFI GGGAC 1 cut(s) 822
BslI CCNNNNNNNGG 2 cut(s) 598, 599
BsmAI GTCTC 1 cut(s) 835
BsmFI GGGAC 1 cut(s) 822
BsmI GAATGC 2 cut(s) 535, 763
BsnI GGCC 1 cut(s) 1017
Bsp1286I GDGCHC 3 cut(s) 42, 562, 828
Bsp143I GATC 2 cut(s) 100, 990
BspACI CCGC 3 cut(s) 584, 692, 815
BspANI GGCC 1 cut(s) 1017
BspCNI CTCAG 2 cut(s) 253, 1114
BspHI TCATGA 1 cut(s) 736
BspLI GGNNCC 2 cut(s) 1044, 1062
BspPI GGATC 1 cut(s) 95
BspTI CTTAAG 1 cut(s) 794
BsrDI GCAATG 1 cut(s) 540
BsrFI RCCGGY 1 cut(s) 1017
BsrI ACTGG 1 cut(s) 119
BssAI RCCGGY 1 cut(s) 1017
BssECI CCNNGG 3 cut(s) 233, 597, 848
BssMI GATC 2 cut(s) 100, 990
BssT1I CCWWGG 1 cut(s) 597
Bst2UI CCWGG 2 cut(s) 235, 849
Bst4CI ACNGT 3 cut(s) 497, 889, 911
Bst6I CTCTTC 1 cut(s) 275
BstAFI CTTAAG 1 cut(s) 794
BstAPI GCANNNNNTGC 1 cut(s) 823
BstDEI CTNAG 4 cut(s) 261, 1065, 1122, 1152
BstF5I GGATG 6 cut(s) 229, 387, 445, 707, 844, 934
BstKTI GATC 2 cut(s) 103, 993
BstMAI GTCTC 1 cut(s) 835
BstMBI GATC 2 cut(s) 100, 990
BstMWI GCNNNNNNNGC 1 cut(s) 823
BstNI CCWGG 2 cut(s) 235, 849
BstSCI CCNGG 3 cut(s) 233, 423, 847
BstSLI GKGCMC 1 cut(s) 828
BstV1I GCAGC 1 cut(s) 269
BstV2I GAAGAC 2 cut(s) 137, 1080
BstX2I RGATCY 1 cut(s) 100
BstXI CCANNNNNNTGG 1 cut(s) 1139
BstYI RGATCY 1 cut(s) 100
BsuI GTATCC 1 cut(s) 125
BsuRI GGCC 1 cut(s) 1017
BtsCI GGATG 6 cut(s) 229, 387, 445, 707, 844, 934
BtsI GCAGTG 1 cut(s) 993
BtsIMutI CAGTG 2 cut(s) 502, 993
CaiI CAGNNNCTG 1 cut(s) 701
CciI TCATGA 1 cut(s) 736
Cfr10I RCCGGY 1 cut(s) 1017
Csp6I GTAC 3 cut(s) 22, 158, 885
CviAII CATG 2 cut(s) 163, 737
CviQI GTAC 3 cut(s) 22, 158, 885
DdeI CTNAG 4 cut(s) 261, 1065, 1122, 1152
DpnI GATC 2 cut(s) 102, 992
DpnII GATC 2 cut(s) 100, 990
EaeI YGGCCR 1 cut(s) 1015
Eam1104I CTCTTC 1 cut(s) 275
EarI CTCTTC 1 cut(s) 275
Ecl136II GAGCTC 1 cut(s) 560
Eco130I CCWWGG 1 cut(s) 597
Eco24I GRGCYC 1 cut(s) 562
Eco53kI GAGCTC 1 cut(s) 560
Eco57I CTGAAG 1 cut(s) 117
EcoICRI GAGCTC 1 cut(s) 560
EcoRII CCWGG 2 cut(s) 233, 847
EcoT14I CCWWGG 1 cut(s) 597
EcoT22I ATGCAT 1 cut(s) 709
EcoT38I GRGCYC 1 cut(s) 562
ErhI CCWWGG 1 cut(s) 597
FaeI CATG 2 cut(s) 166, 740
FaqI GGGAC 1 cut(s) 822
FatI CATG 2 cut(s) 162, 736
FauI CCCGC 1 cut(s) 591
Fnu4HI GCNGC 2 cut(s) 258, 815
FokI GGATG 6 cut(s) 216, 394, 452, 694, 831, 921
FriOI GRGCYC 1 cut(s) 562
Fsp4HI GCNGC 2 cut(s) 258, 815
GluI GCNGC 2 cut(s) 258, 815
GsuI CTGGAG 1 cut(s) 576
HaeIII GGCC 1 cut(s) 1017
HapII CCGG 2 cut(s) 425, 1018
Hin1II CATG 2 cut(s) 166, 740
HincII GTYRAC 1 cut(s) 493
HindII GTYRAC 1 cut(s) 493
HinfI GANTC 6 cut(s) 17, 29, 433, 917, 980, 1118
HpaII CCGG 2 cut(s) 425, 1018
HphI GGTGA 3 cut(s) 230, 512, 657
Hpy166II GTNNAC 3 cut(s) 493, 826, 1105
Hpy188I TCNGA 3 cut(s) 648, 712, 1123
Hpy188III TCNNGA 5 cut(s) 82, 437, 555, 737, 994
Hpy8I GTNNAC 3 cut(s) 493, 826, 1105
HpyAV CCTTC 2 cut(s) 160, 603
HpyCH4III ACNGT 3 cut(s) 497, 889, 911
HpyCH4V TGCA 6 cut(s) 90, 418, 523, 533, 707, 826
HpyF10VI GCNNNNNNNGC 1 cut(s) 823
HpyF3I CTNAG 4 cut(s) 261, 1065, 1122, 1152
Hsp92II CATG 2 cut(s) 166, 740
Kzo9I GATC 2 cut(s) 100, 990
LmnI GCTCC 3 cut(s) 557, 565, 1042
Lsp1109I GCAGC 1 cut(s) 269
LweI GCATC 3 cut(s) 694, 716, 943
MaeIII GTNAC 1 cut(s) 457
MalI GATC 2 cut(s) 102, 992
MboI GATC 2 cut(s) 100, 990
MfeI CAATTG 1 cut(s) 573
MflI RGATCY 1 cut(s) 100
MhlI GDGCHC 3 cut(s) 42, 562, 828
MluCI AATT 4 cut(s) 149, 369, 573, 891
MlyI GAGTC 4 cut(s) 11, 23, 926, 989
MmeI TCCRAC 1 cut(s) 587
Mph1103I ATGCAT 1 cut(s) 709
MseI TTAA 6 cut(s) 63, 75, 635, 795, 870, 897
MspA1I CMGCKG 1 cut(s) 260
MspCI CTTAAG 1 cut(s) 794
MspI CCGG 2 cut(s) 425, 1018
MspR9I CCNGG 3 cut(s) 235, 425, 849
MunI CAATTG 1 cut(s) 573
Mva1269I GAATGC 2 cut(s) 535, 763
MvaI CCWGG 2 cut(s) 235, 849
MwoI GCNNNNNNNGC 1 cut(s) 823
NciI CCSGG 1 cut(s) 425
NdeII GATC 2 cut(s) 100, 990
NlaIII CATG 2 cut(s) 166, 740
NlaIV GGNNCC 2 cut(s) 1044, 1062
NmuCI GTSAC 1 cut(s) 457
NsiI ATGCAT 1 cut(s) 709
PagI TCATGA 1 cut(s) 736
PctI GAATGC 2 cut(s) 535, 763
PfeI GAWTC 2 cut(s) 433, 1118
PkrI GCNGC 2 cut(s) 259, 816
PleI GAGTC 4 cut(s) 11, 23, 925, 988
PpsI GAGTC 4 cut(s) 11, 23, 925, 988
Psp124BI GAGCTC 1 cut(s) 562
Psp6I CCWGG 2 cut(s) 233, 847
PspGI CCWGG 2 cut(s) 233, 847
PspN4I GGNNCC 2 cut(s) 1044, 1062
PstNI CAGNNNCTG 1 cut(s) 701
PsuI RGATCY 1 cut(s) 100
PvuII CAGCTG 1 cut(s) 260
RsaI GTAC 3 cut(s) 23, 159, 886
RsaNI GTAC 3 cut(s) 22, 158, 885
SacI GAGCTC 1 cut(s) 562
SaqAI TTAA 6 cut(s) 63, 75, 635, 795, 870, 897
SatI GCNGC 2 cut(s) 258, 815
Sau3AI GATC 2 cut(s) 100, 990
SchI GAGTC 4 cut(s) 11, 23, 926, 989
ScrFI CCNGG 3 cut(s) 235, 425, 849
SduI GDGCHC 3 cut(s) 42, 562, 828
SfaNI GCATC 3 cut(s) 694, 716, 943
SmlI CTYRAG 3 cut(s) 80, 785, 794
SmoI CTYRAG 3 cut(s) 80, 785, 794
Sse9I AATT 4 cut(s) 149, 369, 573, 891
SsiI CCGC 3 cut(s) 584, 692, 815
SstI GAGCTC 1 cut(s) 562
StyD4I CCNGG 3 cut(s) 233, 423, 847
StyI CCWWGG 1 cut(s) 597
TaaI ACNGT 3 cut(s) 497, 889, 911
TaqI TCGA 1 cut(s) 45
TasI AATT 4 cut(s) 149, 369, 573, 891
TauI GCSGC 1 cut(s) 817
TfiI GAWTC 2 cut(s) 433, 1118
Tru1I TTAA 6 cut(s) 63, 75, 635, 795, 870, 897
Tru9I TTAA 6 cut(s) 63, 75, 635, 795, 870, 897
TscAI CASTG 2 cut(s) 502, 993
TseFI GTSAC 1 cut(s) 457
TseI GCWGC 1 cut(s) 257
Tsp45I GTSAC 1 cut(s) 457
TspDTI ATGAA 5 cut(s) 17, 141, 179, 551, 725
TspRI CASTG 2 cut(s) 502, 993
Vha464I CTTAAG 1 cut(s) 794
VneI GTGCAC 1 cut(s) 824
Zsp2I ATGCAT 1 cut(s) 709
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.