Rmu_sc0000026.1_g000009

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000026.1
OG0019505
Physical Location & Seq
Forward (+)
53774 .. 54172
399 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 399 bp
atgcaggagtcatacataaaagacatggagagggcttttggcattctccaagctcgttttacaatagtaagaggacccgcccgtggatgggatagagaggatctatcatacatcatgatgacctgcatgattttccacaacatgattgtcgatgatgagcatgaagaagatgaagagttgccttttgaccccaatgatatccccactagaccaaggaaagcacaaatatatgacaggtatgaggatgatcatgaggttgagcgcaaccgtcttgaacttgaggagttcatgacccgttaccagggggttagatgcccaattgtgcatagagtccttcaaggagatttggttaatcacctctggaacatgaagctgcaagcaaagcggaaccgcagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

132

Amino Acids

16.07

Weight (kDa)

5.38

Isoelectric Point (pI)

48.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Plant_tran PF04827 2 - 56 5.1e-20 Plant transposon protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 131
AciI CCGC 3 cut(s) 78, 385, 391
AclWI GGATC 1 cut(s) 108
AfiI CCNNNNNNNGG 4 cut(s) 83, 87, 88, 301
AgsI TTSAA 2 cut(s) 275, 338
AjnI CCWGG 1 cut(s) 300
AluBI AGCT 2 cut(s) 53, 373
AluI AGCT 2 cut(s) 53, 373
AlwI GGATC 1 cut(s) 108
ApeKI GCWGC 1 cut(s) 373
AspLEI GCGC 1 cut(s) 264
AspS9I GGNCC 1 cut(s) 74
AsuHPI GGTGA 1 cut(s) 347
AvaII GGWCC 1 cut(s) 74
BbvI GCAGC 1 cut(s) 360
BccI CCATC 1 cut(s) 81
BciT130I CCWGG 1 cut(s) 302
BclI TGATCA 1 cut(s) 247
BfaI CTAG 1 cut(s) 207
BfuAI ACCTGC 1 cut(s) 131
BisI GCNGC 1 cut(s) 374
BlsI GCNGC 1 cut(s) 375
Bme1390I CCNGG 1 cut(s) 302
Bme18I GGWCC 1 cut(s) 74
BmgT120I GGNCC 1 cut(s) 74
BmiI GGNNCC 2 cut(s) 76, 389
BmrFI CCNGG 1 cut(s) 302
BmsI GCATC 1 cut(s) 302
BpuEI CTTGAG 1 cut(s) 299
BsaJI CCNNGG 3 cut(s) 82, 212, 301
BsaXI ACNNNNNCTCC 2 cut(s) 333, 363
Bsc4I CCNNNNNNNGG 4 cut(s) 83, 87, 88, 301
BseBI CCWGG 1 cut(s) 302
BseDI CCNNGG 3 cut(s) 82, 212, 301
BseGI GGATG 2 cut(s) 92, 250
BseLI CCNNNNNNNGG 4 cut(s) 83, 87, 88, 301
BseRI GAGGAG 1 cut(s) 296
BseXI GCAGC 1 cut(s) 360
BslI CCNNNNNNNGG 4 cut(s) 83, 87, 88, 301
BsmI GAATGC 1 cut(s) 42
Bsp143I GATC 2 cut(s) 100, 247
BspACI CCGC 3 cut(s) 78, 385, 391
BspHI TCATGA 3 cut(s) 114, 250, 288
BspLI GGNNCC 2 cut(s) 76, 389
BspMI ACCTGC 1 cut(s) 131
BspPI GGATC 1 cut(s) 108
BssECI CCNNGG 3 cut(s) 82, 212, 301
BssMI GATC 2 cut(s) 100, 247
BssT1I CCWWGG 1 cut(s) 212
Bst2UI CCWGG 1 cut(s) 302
Bst4CI ACNGT 1 cut(s) 269
Bst6I CTCTTC 1 cut(s) 168
BstC8I GCNNGC 1 cut(s) 378
BstDSI CCRYGG 1 cut(s) 82
BstF5I GGATG 2 cut(s) 92, 250
BstHHI GCGC 1 cut(s) 264
BstKTI GATC 2 cut(s) 103, 250
BstMBI GATC 2 cut(s) 100, 247
BstMWI GCNNNNNNNGC 1 cut(s) 382
BstNI CCWGG 1 cut(s) 302
BstSCI CCNGG 1 cut(s) 300
BstV1I GCAGC 1 cut(s) 360
BstX2I RGATCY 1 cut(s) 100
BstYI RGATCY 1 cut(s) 100
BtgI CCRYGG 1 cut(s) 82
BtsCI GGATG 2 cut(s) 92, 250
BveI ACCTGC 1 cut(s) 131
Cac8I GCNNGC 1 cut(s) 378
CciI TCATGA 3 cut(s) 114, 250, 288
CfoI GCGC 1 cut(s) 264
Cfr13I GGNCC 1 cut(s) 74
CviAII CATG 8 cut(s) 25, 115, 127, 142, 161, 251, 289, 367
CviJI RGCY 3 cut(s) 35, 53, 373
CviKI_1 RGCY 3 cut(s) 35, 53, 373
DpnI GATC 2 cut(s) 102, 249
DpnII GATC 2 cut(s) 100, 247
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
Eco130I CCWWGG 1 cut(s) 212
Eco32I GATATC 1 cut(s) 199
Eco47I GGWCC 1 cut(s) 74
EcoO109I RGGNCCY 1 cut(s) 74
EcoRII CCWGG 1 cut(s) 300
EcoRV GATATC 1 cut(s) 199
EcoT14I CCWWGG 1 cut(s) 212
ErhI CCWWGG 1 cut(s) 212
FaeI CATG 8 cut(s) 28, 118, 130, 145, 164, 254, 292, 370
FatI CATG 8 cut(s) 24, 114, 126, 141, 160, 250, 288, 366
FauI CCCGC 1 cut(s) 85
FbaI TGATCA 1 cut(s) 247
Fnu4HI GCNGC 1 cut(s) 374
FokI GGATG 2 cut(s) 99, 257
Fsp4HI GCNGC 1 cut(s) 374
FspBI CTAG 1 cut(s) 207
GlaI GCGC 1 cut(s) 263
GluI GCNGC 1 cut(s) 374
HhaI GCGC 1 cut(s) 264
Hin1II CATG 8 cut(s) 28, 118, 130, 145, 164, 254, 292, 370
Hin6I GCGC 1 cut(s) 262
HinP1I GCGC 1 cut(s) 262
HinfI GANTC 2 cut(s) 8, 330
HphI GGTGA 1 cut(s) 347
Hpy188III TCNNGA 5 cut(s) 115, 251, 272, 289, 361
HpyAV CCTTC 1 cut(s) 344
HpyCH4III ACNGT 1 cut(s) 269
HpyCH4V TGCA 4 cut(s) 4, 126, 325, 376
HpyF10VI GCNNNNNNNGC 1 cut(s) 382
Hsp92II CATG 8 cut(s) 28, 118, 130, 145, 164, 254, 292, 370
HspAI GCGC 1 cut(s) 262
Ksp22I TGATCA 1 cut(s) 247
Kzo9I GATC 2 cut(s) 100, 247
LpnPI CCDG 5 cut(s) 136, 220, 287, 314, 346
Lsp1109I GCAGC 1 cut(s) 360
LweI GCATC 1 cut(s) 302
MaeI CTAG 1 cut(s) 207
MaeIII GTNAC 1 cut(s) 296
MalI GATC 2 cut(s) 102, 249
MboI GATC 2 cut(s) 100, 247
MboII GAAGA 3 cut(s) 176, 179, 185
MfeI CAATTG 1 cut(s) 318
MflI RGATCY 1 cut(s) 100
MluCI AATT 1 cut(s) 318
MlyI GAGTC 2 cut(s) 17, 339
MnlI CCTC 7 cut(s) 24, 65, 91, 235, 247, 274, 368
MseI TTAA 1 cut(s) 351
MslI CAYNNNNRTG 1 cut(s) 116
MspR9I CCNGG 1 cut(s) 302
MunI CAATTG 1 cut(s) 318
Mva1269I GAATGC 1 cut(s) 42
MvaI CCWGG 1 cut(s) 302
MwoI GCNNNNNNNGC 1 cut(s) 382
NdeII GATC 2 cut(s) 100, 247
NlaIII CATG 8 cut(s) 28, 118, 130, 145, 164, 254, 292, 370
NlaIV GGNNCC 2 cut(s) 76, 389
PagI TCATGA 3 cut(s) 114, 250, 288
PctI GAATGC 1 cut(s) 42
PkrI GCNGC 1 cut(s) 375
PleI GAGTC 2 cut(s) 16, 338
PpsI GAGTC 2 cut(s) 16, 338
PpuMI RGGWCCY 1 cut(s) 74
Psp5II RGGWCCY 1 cut(s) 74
Psp6I CCWGG 1 cut(s) 300
PspGI CCWGG 1 cut(s) 300
PspN4I GGNNCC 2 cut(s) 76, 389
PspPI GGNCC 1 cut(s) 74
PspPPI RGGWCCY 1 cut(s) 74
PsuI RGATCY 1 cut(s) 100
RseI CAYNNNNRTG 1 cut(s) 116
SaqAI TTAA 1 cut(s) 351
SatI GCNGC 1 cut(s) 374
Sau3AI GATC 2 cut(s) 100, 247
Sau96I GGNCC 1 cut(s) 74
SchI GAGTC 2 cut(s) 17, 339
ScrFI CCNGG 1 cut(s) 302
SetI ASST 6 cut(s) 55, 125, 239, 258, 360, 375
SfaNI GCATC 1 cut(s) 302
SinI GGWCC 1 cut(s) 74
SmiMI CAYNNNNRTG 1 cut(s) 116
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
Sse9I AATT 1 cut(s) 318
SsiI CCGC 3 cut(s) 78, 385, 391
SspMI CTAG 1 cut(s) 207
StyD4I CCNGG 1 cut(s) 300
StyI CCWWGG 1 cut(s) 212
TaaI ACNGT 1 cut(s) 269
TaqI TCGA 1 cut(s) 150
TasI AATT 1 cut(s) 318
Tru1I TTAA 1 cut(s) 351
Tru9I TTAA 1 cut(s) 351
TseI GCWGC 1 cut(s) 373
TspDTI ATGAA 4 cut(s) 177, 186, 277, 383
VpaK11BI GGWCC 1 cut(s) 74
XspI CTAG 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.