Rmu_sc0003517.1_g000015

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003517.1
OG0019505
Physical Location & Seq
Reverse (-)
61968 .. 62336
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003517.1_g000015.1.cds

Sequence Viewer

Length: 369 bp
atgcaggagtcatacagaaaagacgtggagagggcttttggcattctccaagctcgttttgcaatagtaagaggacgcgcccgtggatgggatagggaggatctatcatacatcatgatgacctgcattattttgcacaacatgattgtcaatgatgagcgtgaagaagatgaagagtcgccttttgaccccgatgatatccccacaagaccaaggaaagcacaaatatatgagaggtatgaggatgatcatgaggttgagcgcaaccgtcctgaacttgaggagttcatgacccgttcccaggggttagatgcccaattgtgcatagagtccttcaaggagatttggttaatcacctctggaacatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

122

Amino Acids

14.59

Weight (kDa)

4.63

Isoelectric Point (pI)

48.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 131
AccII CGCG 1 cut(s) 78
AclWI GGATC 1 cut(s) 108
AfiI CCNNNNNNNGG 3 cut(s) 87, 88, 301
AgsI TTSAA 1 cut(s) 337
AjiI CACGTC 1 cut(s) 25
AjnI CCWGG 1 cut(s) 300
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
AlwI GGATC 1 cut(s) 108
AspLEI GCGC 2 cut(s) 80, 264
AsuHPI GGTGA 1 cut(s) 346
BccI CCATC 1 cut(s) 81
BciT130I CCWGG 1 cut(s) 302
BclI TGATCA 1 cut(s) 247
BfuAI ACCTGC 1 cut(s) 131
Bme1390I CCNGG 1 cut(s) 302
BmgBI CACGTC 1 cut(s) 25
BmrFI CCNGG 1 cut(s) 302
BmsI GCATC 1 cut(s) 301
BpuEI CTTGAG 1 cut(s) 299
BsaJI CCNNGG 4 cut(s) 82, 212, 300, 301
BsaXI ACNNNNNCTCC 2 cut(s) 332, 362
Bsc4I CCNNNNNNNGG 3 cut(s) 87, 88, 301
BseBI CCWGG 1 cut(s) 302
BseDI CCNNGG 4 cut(s) 82, 212, 300, 301
BseGI GGATG 2 cut(s) 92, 250
BseLI CCNNNNNNNGG 3 cut(s) 87, 88, 301
BseRI GAGGAG 1 cut(s) 296
Bsh1236I CGCG 1 cut(s) 78
BslI CCNNNNNNNGG 3 cut(s) 87, 88, 301
BsmI GAATGC 1 cut(s) 42
Bsp143I GATC 2 cut(s) 100, 247
BspFNI CGCG 1 cut(s) 78
BspHI TCATGA 3 cut(s) 114, 250, 288
BspMI ACCTGC 1 cut(s) 131
BspPI GGATC 1 cut(s) 108
BssECI CCNNGG 4 cut(s) 82, 212, 300, 301
BssMI GATC 2 cut(s) 100, 247
BssT1I CCWWGG 1 cut(s) 212
Bst2UI CCWGG 1 cut(s) 302
Bst4CI ACNGT 1 cut(s) 269
Bst6I CTCTTC 1 cut(s) 168
BstDSI CCRYGG 1 cut(s) 82
BstF5I GGATG 2 cut(s) 92, 250
BstFNI CGCG 1 cut(s) 78
BstHHI GCGC 2 cut(s) 80, 264
BstKTI GATC 2 cut(s) 103, 250
BstMBI GATC 2 cut(s) 100, 247
BstMWI GCNNNNNNNGC 1 cut(s) 59
BstNI CCWGG 1 cut(s) 302
BstSCI CCNGG 1 cut(s) 300
BstUI CGCG 1 cut(s) 78
BstX2I RGATCY 1 cut(s) 100
BstYI RGATCY 1 cut(s) 100
BtgI CCRYGG 1 cut(s) 82
BtrI CACGTC 1 cut(s) 25
BtsCI GGATG 2 cut(s) 92, 250
BveI ACCTGC 1 cut(s) 131
CciI TCATGA 3 cut(s) 114, 250, 288
CfoI GCGC 2 cut(s) 80, 264
CseI GACGC 1 cut(s) 84
CviAII CATG 5 cut(s) 115, 142, 251, 289, 366
CviJI RGCY 2 cut(s) 35, 53
CviKI_1 RGCY 2 cut(s) 35, 53
DpnI GATC 2 cut(s) 102, 249
DpnII GATC 2 cut(s) 100, 247
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
Eco130I CCWWGG 1 cut(s) 212
Eco32I GATATC 1 cut(s) 199
EcoRII CCWGG 1 cut(s) 300
EcoRV GATATC 1 cut(s) 199
EcoT14I CCWWGG 1 cut(s) 212
ErhI CCWWGG 1 cut(s) 212
FaeI CATG 5 cut(s) 118, 145, 254, 292, 369
FatI CATG 5 cut(s) 114, 141, 250, 288, 365
FbaI TGATCA 1 cut(s) 247
FokI GGATG 2 cut(s) 99, 257
GlaI GCGC 2 cut(s) 79, 263
HgaI GACGC 1 cut(s) 84
HhaI GCGC 2 cut(s) 80, 264
Hin1II CATG 5 cut(s) 118, 145, 254, 292, 369
Hin6I GCGC 2 cut(s) 78, 262
HinP1I GCGC 2 cut(s) 78, 262
HinfI GANTC 3 cut(s) 8, 176, 329
HphI GGTGA 1 cut(s) 346
Hpy188III TCNNGA 5 cut(s) 115, 251, 272, 289, 360
HpyAV CCTTC 1 cut(s) 343
HpyCH4III ACNGT 1 cut(s) 269
HpyCH4IV ACGT 1 cut(s) 24
HpyCH4V TGCA 5 cut(s) 4, 62, 126, 136, 324
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
HpySE526I ACGT 1 cut(s) 24
Hsp92II CATG 5 cut(s) 118, 145, 254, 292, 369
HspAI GCGC 2 cut(s) 78, 262
Ksp22I TGATCA 1 cut(s) 247
Kzo9I GATC 2 cut(s) 100, 247
LpnPI CCDG 5 cut(s) 136, 285, 287, 314, 345
LweI GCATC 1 cut(s) 301
MaeII ACGT 1 cut(s) 24
MalI GATC 2 cut(s) 102, 249
MboI GATC 2 cut(s) 100, 247
MboII GAAGA 3 cut(s) 176, 179, 185
MfeI CAATTG 1 cut(s) 317
MflI RGATCY 1 cut(s) 100
MluCI AATT 1 cut(s) 317
MlyI GAGTC 3 cut(s) 17, 185, 338
MnlI CCTC 8 cut(s) 24, 65, 91, 228, 235, 247, 274, 367
MseI TTAA 1 cut(s) 350
MslI CAYNNNNRTG 1 cut(s) 116
MspR9I CCNGG 1 cut(s) 302
MunI CAATTG 1 cut(s) 317
Mva1269I GAATGC 1 cut(s) 42
MvaI CCWGG 1 cut(s) 302
MvnI CGCG 1 cut(s) 78
MwoI GCNNNNNNNGC 1 cut(s) 59
NdeII GATC 2 cut(s) 100, 247
NlaIII CATG 5 cut(s) 118, 145, 254, 292, 369
PagI TCATGA 3 cut(s) 114, 250, 288
PasI CCCWGGG 1 cut(s) 301
PctI GAATGC 1 cut(s) 42
PleI GAGTC 3 cut(s) 16, 184, 337
PpsI GAGTC 3 cut(s) 16, 184, 337
Psp6I CCWGG 1 cut(s) 300
PspGI CCWGG 1 cut(s) 300
PsuI RGATCY 1 cut(s) 100
RseI CAYNNNNRTG 1 cut(s) 116
SaqAI TTAA 1 cut(s) 350
Sau3AI GATC 2 cut(s) 100, 247
SchI GAGTC 3 cut(s) 17, 185, 338
ScrFI CCNGG 1 cut(s) 302
SetI ASST 6 cut(s) 27, 55, 125, 239, 258, 359
SfaNI GCATC 1 cut(s) 301
SmiMI CAYNNNNRTG 1 cut(s) 116
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
Sse9I AATT 1 cut(s) 317
StyD4I CCNGG 1 cut(s) 300
StyI CCWWGG 1 cut(s) 212
TaaI ACNGT 1 cut(s) 269
TaiI ACGT 1 cut(s) 27
TasI AATT 1 cut(s) 317
Tru1I TTAA 1 cut(s) 350
Tru9I TTAA 1 cut(s) 350
TspDTI ATGAA 2 cut(s) 186, 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.