Rmu_sc0003686.1_g000002

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003686.1
OG0019505
Physical Location & Seq
Reverse (-)
4734 .. 5096
363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003686.1_g000002.1.cds

Sequence Viewer

Length: 363 bp
atgcaggagtcatacagaaaagacttggagagggcttttggcattctccaagctcgttttgcaatagtaagaagatccgcccgtggatgggatagagaggatctatcatacatcatgatgacctgcattattttgcacaacatgattgtcgatgatgagcgtgaaaaagatgaagagtcgccttttgaccccgatgatatccccaccagaccaaggaaaacacaaatatatgagaggtatgaggataatcatgaggttaagcgcaaccgtcctgaacttgaggagttcatgacccgttaccagggggttagatgcccaattgtgcatagagtccttcaaggagatttggttaatcacctctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

120

Amino Acids

14.54

Weight (kDa)

5.59

Isoelectric Point (pI)

46.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 131
AciI CCGC 1 cut(s) 78
AclWI GGATC 2 cut(s) 69, 108
AfiI CCNNNNNNNGG 4 cut(s) 87, 88, 213, 301
AgsI TTSAA 1 cut(s) 338
AjnI CCWGG 1 cut(s) 300
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
AlwI GGATC 2 cut(s) 69, 108
AspLEI GCGC 1 cut(s) 264
AsuHPI GGTGA 1 cut(s) 347
BccI CCATC 1 cut(s) 81
BciT130I CCWGG 1 cut(s) 302
BfaI CTAG 1 cut(s) 361
BfuAI ACCTGC 1 cut(s) 131
Bme1390I CCNGG 1 cut(s) 302
BmrFI CCNGG 1 cut(s) 302
BmsI GCATC 1 cut(s) 302
BpuEI CTTGAG 1 cut(s) 299
BsaJI CCNNGG 3 cut(s) 82, 212, 301
BsaXI ACNNNNNCTCC 2 cut(s) 333, 363
Bsc4I CCNNNNNNNGG 4 cut(s) 87, 88, 213, 301
BseBI CCWGG 1 cut(s) 302
BseDI CCNNGG 3 cut(s) 82, 212, 301
BseGI GGATG 1 cut(s) 92
BseLI CCNNNNNNNGG 4 cut(s) 87, 88, 213, 301
BseRI GAGGAG 1 cut(s) 296
BslI CCNNNNNNNGG 4 cut(s) 87, 88, 213, 301
BsmI GAATGC 1 cut(s) 42
Bsp143I GATC 2 cut(s) 74, 100
BspACI CCGC 1 cut(s) 78
BspHI TCATGA 3 cut(s) 114, 250, 288
BspMI ACCTGC 1 cut(s) 131
BspPI GGATC 2 cut(s) 69, 108
BssECI CCNNGG 3 cut(s) 82, 212, 301
BssMI GATC 2 cut(s) 74, 100
BssT1I CCWWGG 1 cut(s) 212
Bst2UI CCWGG 1 cut(s) 302
Bst4CI ACNGT 1 cut(s) 269
Bst6I CTCTTC 1 cut(s) 168
BstDSI CCRYGG 1 cut(s) 82
BstF5I GGATG 1 cut(s) 92
BstHHI GCGC 1 cut(s) 264
BstKTI GATC 2 cut(s) 77, 103
BstMBI GATC 2 cut(s) 74, 100
BstMWI GCNNNNNNNGC 1 cut(s) 59
BstNI CCWGG 1 cut(s) 302
BstSCI CCNGG 1 cut(s) 300
BstX2I RGATCY 2 cut(s) 74, 100
BstYI RGATCY 2 cut(s) 74, 100
BtgI CCRYGG 1 cut(s) 82
BtsCI GGATG 1 cut(s) 92
BveI ACCTGC 1 cut(s) 131
CciI TCATGA 3 cut(s) 114, 250, 288
CfoI GCGC 1 cut(s) 264
CviAII CATG 4 cut(s) 115, 142, 251, 289
CviJI RGCY 2 cut(s) 35, 53
CviKI_1 RGCY 2 cut(s) 35, 53
DpnI GATC 2 cut(s) 76, 102
DpnII GATC 2 cut(s) 74, 100
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
EciI GGCGGA 1 cut(s) 67
Eco130I CCWWGG 1 cut(s) 212
Eco32I GATATC 1 cut(s) 199
EcoRII CCWGG 1 cut(s) 300
EcoRV GATATC 1 cut(s) 199
EcoT14I CCWWGG 1 cut(s) 212
ErhI CCWWGG 1 cut(s) 212
FaeI CATG 4 cut(s) 118, 145, 254, 292
FatI CATG 4 cut(s) 114, 141, 250, 288
FokI GGATG 1 cut(s) 99
FspBI CTAG 1 cut(s) 361
GlaI GCGC 1 cut(s) 263
HhaI GCGC 1 cut(s) 264
Hin1II CATG 4 cut(s) 118, 145, 254, 292
Hin6I GCGC 1 cut(s) 262
HinP1I GCGC 1 cut(s) 262
HinfI GANTC 3 cut(s) 8, 176, 330
HphI GGTGA 1 cut(s) 347
Hpy188III TCNNGA 4 cut(s) 115, 251, 272, 289
HpyAV CCTTC 1 cut(s) 344
HpyCH4III ACNGT 1 cut(s) 269
HpyCH4V TGCA 5 cut(s) 4, 62, 126, 136, 325
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
Hsp92II CATG 4 cut(s) 118, 145, 254, 292
HspAI GCGC 1 cut(s) 262
Kzo9I GATC 2 cut(s) 74, 100
LpnPI CCDG 5 cut(s) 136, 220, 285, 287, 314
LweI GCATC 1 cut(s) 302
MaeI CTAG 1 cut(s) 361
MaeIII GTNAC 1 cut(s) 296
MalI GATC 2 cut(s) 76, 102
MboI GATC 2 cut(s) 74, 100
MboII GAAGA 2 cut(s) 84, 185
MfeI CAATTG 1 cut(s) 318
MflI RGATCY 2 cut(s) 74, 100
MluCI AATT 1 cut(s) 318
MlyI GAGTC 3 cut(s) 17, 185, 339
MnlI CCTC 6 cut(s) 24, 91, 228, 235, 247, 274
MseI TTAA 2 cut(s) 258, 351
MslI CAYNNNNRTG 1 cut(s) 116
MspR9I CCNGG 1 cut(s) 302
MunI CAATTG 1 cut(s) 318
Mva1269I GAATGC 1 cut(s) 42
MvaI CCWGG 1 cut(s) 302
MwoI GCNNNNNNNGC 1 cut(s) 59
NdeII GATC 2 cut(s) 74, 100
NlaIII CATG 4 cut(s) 118, 145, 254, 292
PagI TCATGA 3 cut(s) 114, 250, 288
PctI GAATGC 1 cut(s) 42
PleI GAGTC 3 cut(s) 16, 184, 338
PpsI GAGTC 3 cut(s) 16, 184, 338
Psp6I CCWGG 1 cut(s) 300
PspGI CCWGG 1 cut(s) 300
PsuI RGATCY 2 cut(s) 74, 100
RseI CAYNNNNRTG 1 cut(s) 116
SaqAI TTAA 2 cut(s) 258, 351
Sau3AI GATC 2 cut(s) 74, 100
SchI GAGTC 3 cut(s) 17, 185, 339
ScrFI CCNGG 1 cut(s) 302
SetI ASST 5 cut(s) 55, 125, 239, 258, 360
SfaNI GCATC 1 cut(s) 302
SmiMI CAYNNNNRTG 1 cut(s) 116
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
Sse9I AATT 1 cut(s) 318
SsiI CCGC 1 cut(s) 78
SspMI CTAG 1 cut(s) 361
StyD4I CCNGG 1 cut(s) 300
StyI CCWWGG 1 cut(s) 212
TaaI ACNGT 1 cut(s) 269
TaqI TCGA 1 cut(s) 150
TasI AATT 1 cut(s) 318
Tru1I TTAA 2 cut(s) 258, 351
Tru9I TTAA 2 cut(s) 258, 351
TspDTI ATGAA 2 cut(s) 186, 277
XspI CTAG 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.