Rmu_sc0001345.1_g000001

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001345.1
OG0019505
Physical Location & Seq
Reverse (-)
339 .. 596
258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001345.1_g000001.1.cds

Sequence Viewer

Length: 258 bp
atgattgtcgatgatgagcatgaagaagatgaagagttgccttttgaccccaatgatatccccaccagaccaaggaaagcacaaatatatgagaggtatgaggatgatcatgaggttgagcgcaaccgtcttgaacttgaggagttcatgacccgttaccagggggttagatgcccaattgtgcatagagtccttcaaggagatttggttaatcacctctggaacatgaagctgcaagcaaagcggaaccgcagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

85

Amino Acids

10.47

Weight (kDa)

5.16

Isoelectric Point (pI)

51.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 244, 250
AfiI CCNNNNNNNGG 2 cut(s) 72, 160
AgsI TTSAA 2 cut(s) 134, 197
AjnI CCWGG 1 cut(s) 159
AluBI AGCT 1 cut(s) 232
AluI AGCT 1 cut(s) 232
ApeKI GCWGC 1 cut(s) 232
AspLEI GCGC 1 cut(s) 123
AsuHPI GGTGA 1 cut(s) 206
BbvI GCAGC 1 cut(s) 219
BciT130I CCWGG 1 cut(s) 161
BclI TGATCA 1 cut(s) 106
BisI GCNGC 1 cut(s) 233
BlsI GCNGC 1 cut(s) 234
Bme1390I CCNGG 1 cut(s) 161
BmiI GGNNCC 1 cut(s) 248
BmrFI CCNGG 1 cut(s) 161
BmsI GCATC 1 cut(s) 161
BpuEI CTTGAG 1 cut(s) 158
BsaJI CCNNGG 2 cut(s) 71, 160
BsaXI ACNNNNNCTCC 2 cut(s) 192, 222
Bsc4I CCNNNNNNNGG 2 cut(s) 72, 160
BseBI CCWGG 1 cut(s) 161
BseDI CCNNGG 2 cut(s) 71, 160
BseGI GGATG 1 cut(s) 109
BseLI CCNNNNNNNGG 2 cut(s) 72, 160
BseRI GAGGAG 1 cut(s) 155
BseXI GCAGC 1 cut(s) 219
BslI CCNNNNNNNGG 2 cut(s) 72, 160
Bsp143I GATC 1 cut(s) 106
BspACI CCGC 2 cut(s) 244, 250
BspHI TCATGA 2 cut(s) 109, 147
BspLI GGNNCC 1 cut(s) 248
BssECI CCNNGG 2 cut(s) 71, 160
BssMI GATC 1 cut(s) 106
BssT1I CCWWGG 1 cut(s) 71
Bst2UI CCWGG 1 cut(s) 161
Bst4CI ACNGT 1 cut(s) 128
Bst6I CTCTTC 1 cut(s) 27
BstC8I GCNNGC 1 cut(s) 237
BstF5I GGATG 1 cut(s) 109
BstHHI GCGC 1 cut(s) 123
BstKTI GATC 1 cut(s) 109
BstMBI GATC 1 cut(s) 106
BstMWI GCNNNNNNNGC 1 cut(s) 241
BstNI CCWGG 1 cut(s) 161
BstSCI CCNGG 1 cut(s) 159
BstV1I GCAGC 1 cut(s) 219
BtsCI GGATG 1 cut(s) 109
Cac8I GCNNGC 1 cut(s) 237
CciI TCATGA 2 cut(s) 109, 147
CfoI GCGC 1 cut(s) 123
CviAII CATG 4 cut(s) 20, 110, 148, 226
CviJI RGCY 1 cut(s) 232
CviKI_1 RGCY 1 cut(s) 232
DpnI GATC 1 cut(s) 108
DpnII GATC 1 cut(s) 106
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
Eco130I CCWWGG 1 cut(s) 71
Eco32I GATATC 1 cut(s) 58
EcoRII CCWGG 1 cut(s) 159
EcoRV GATATC 1 cut(s) 58
EcoT14I CCWWGG 1 cut(s) 71
ErhI CCWWGG 1 cut(s) 71
FaeI CATG 4 cut(s) 23, 113, 151, 229
FaiI YATR 8 cut(s) 21, 88, 90, 99, 111, 149, 186, 227
FatI CATG 4 cut(s) 19, 109, 147, 225
FbaI TGATCA 1 cut(s) 106
Fnu4HI GCNGC 1 cut(s) 233
FokI GGATG 1 cut(s) 116
Fsp4HI GCNGC 1 cut(s) 233
GlaI GCGC 1 cut(s) 122
GluI GCNGC 1 cut(s) 233
HhaI GCGC 1 cut(s) 123
Hin1II CATG 4 cut(s) 23, 113, 151, 229
Hin6I GCGC 1 cut(s) 121
HinP1I GCGC 1 cut(s) 121
HinfI GANTC 1 cut(s) 189
HphI GGTGA 1 cut(s) 206
Hpy188III TCNNGA 4 cut(s) 110, 131, 148, 220
HpyAV CCTTC 1 cut(s) 203
HpyCH4III ACNGT 1 cut(s) 128
HpyCH4V TGCA 2 cut(s) 184, 235
HpyF10VI GCNNNNNNNGC 1 cut(s) 241
Hsp92II CATG 4 cut(s) 23, 113, 151, 229
HspAI GCGC 1 cut(s) 121
Ksp22I TGATCA 1 cut(s) 106
Kzo9I GATC 1 cut(s) 106
LpnPI CCDG 4 cut(s) 79, 146, 173, 205
Lsp1109I GCAGC 1 cut(s) 219
LweI GCATC 1 cut(s) 161
MaeIII GTNAC 1 cut(s) 155
MalI GATC 1 cut(s) 108
MboI GATC 1 cut(s) 106
MboII GAAGA 3 cut(s) 35, 38, 44
MfeI CAATTG 1 cut(s) 177
MluCI AATT 1 cut(s) 177
MlyI GAGTC 1 cut(s) 198
MnlI CCTC 5 cut(s) 87, 94, 106, 133, 227
MseI TTAA 1 cut(s) 210
MspR9I CCNGG 1 cut(s) 161
MunI CAATTG 1 cut(s) 177
MvaI CCWGG 1 cut(s) 161
MwoI GCNNNNNNNGC 1 cut(s) 241
NdeII GATC 1 cut(s) 106
NlaIII CATG 4 cut(s) 23, 113, 151, 229
NlaIV GGNNCC 1 cut(s) 248
PagI TCATGA 2 cut(s) 109, 147
PkrI GCNGC 1 cut(s) 234
PleI GAGTC 1 cut(s) 197
PpsI GAGTC 1 cut(s) 197
Psp6I CCWGG 1 cut(s) 159
PspGI CCWGG 1 cut(s) 159
PspN4I GGNNCC 1 cut(s) 248
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 1 cut(s) 233
Sau3AI GATC 1 cut(s) 106
SchI GAGTC 1 cut(s) 198
ScrFI CCNGG 1 cut(s) 161
SetI ASST 4 cut(s) 98, 117, 219, 234
SfaNI GCATC 1 cut(s) 161
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
Sse9I AATT 1 cut(s) 177
SsiI CCGC 2 cut(s) 244, 250
StyD4I CCNGG 1 cut(s) 159
StyI CCWWGG 1 cut(s) 71
TaaI ACNGT 1 cut(s) 128
TaqI TCGA 1 cut(s) 9
TasI AATT 1 cut(s) 177
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TseI GCWGC 1 cut(s) 232
TspDTI ATGAA 4 cut(s) 36, 45, 136, 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.