Rmu_sc0009315.1_g000003

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009315.1
OG0019505
Physical Location & Seq
Reverse (-)
2300 .. 2581
282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009315.1_g000003.1.cds

Sequence Viewer

Length: 282 bp
atgacatgcattattttgcacaacatgattgttgatgatgagcgtgaagaagatgaagaatcgcctattgaccccgatgatatccccaccagaccaaggaaagcacaaatatatgagaggtatgaggatgatcatgaggttgagcgcaatcgtcctgaacttgaggagttcatgacccattatgagggggttagatgcccaattgtgcatagagtccttcaaggagatttggttaatcacctctggaccatgaagctgcaagtagagcagaaccgcagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

93

Amino Acids

11.31

Weight (kDa)

4.75

Isoelectric Point (pI)

55.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 274
AfiI CCNNNNNNNGG 2 cut(s) 96, 184
AgsI TTSAA 1 cut(s) 221
AluBI AGCT 1 cut(s) 256
AluI AGCT 1 cut(s) 256
ApeKI GCWGC 1 cut(s) 256
AspLEI GCGC 1 cut(s) 147
AspS9I GGNCC 1 cut(s) 246
AsuHPI GGTGA 1 cut(s) 230
AvaII GGWCC 1 cut(s) 246
BbvI GCAGC 1 cut(s) 243
BclI TGATCA 1 cut(s) 130
BisI GCNGC 1 cut(s) 257
BlsI GCNGC 1 cut(s) 258
Bme18I GGWCC 1 cut(s) 246
BmgT120I GGNCC 1 cut(s) 246
BmsI GCATC 1 cut(s) 185
BpuEI CTTGAG 1 cut(s) 182
BsaJI CCNNGG 1 cut(s) 95
BsaXI ACNNNNNCTCC 2 cut(s) 216, 246
Bsc4I CCNNNNNNNGG 2 cut(s) 96, 184
BseDI CCNNGG 1 cut(s) 95
BseGI GGATG 1 cut(s) 133
BseLI CCNNNNNNNGG 2 cut(s) 96, 184
BseRI GAGGAG 1 cut(s) 179
BseXI GCAGC 1 cut(s) 243
BslI CCNNNNNNNGG 2 cut(s) 96, 184
Bsp143I GATC 1 cut(s) 130
BspACI CCGC 1 cut(s) 274
BspHI TCATGA 2 cut(s) 133, 171
BssECI CCNNGG 1 cut(s) 95
BssMI GATC 1 cut(s) 130
BssT1I CCWWGG 1 cut(s) 95
BstF5I GGATG 1 cut(s) 133
BstHHI GCGC 1 cut(s) 147
BstKTI GATC 1 cut(s) 133
BstMBI GATC 1 cut(s) 130
BstMWI GCNNNNNNNGC 1 cut(s) 265
BstNSI RCATGY 1 cut(s) 9
BstV1I GCAGC 1 cut(s) 243
BtsCI GGATG 1 cut(s) 133
CciI TCATGA 2 cut(s) 133, 171
CfoI GCGC 1 cut(s) 147
Cfr13I GGNCC 1 cut(s) 246
CviAII CATG 5 cut(s) 6, 25, 134, 172, 250
CviJI RGCY 1 cut(s) 256
CviKI_1 RGCY 1 cut(s) 256
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
Eco130I CCWWGG 1 cut(s) 95
Eco32I GATATC 1 cut(s) 82
Eco47I GGWCC 1 cut(s) 246
EcoRV GATATC 1 cut(s) 82
EcoT14I CCWWGG 1 cut(s) 95
EcoT22I ATGCAT 1 cut(s) 11
ErhI CCWWGG 1 cut(s) 95
FaeI CATG 5 cut(s) 9, 28, 137, 175, 253
FatI CATG 5 cut(s) 5, 24, 133, 171, 249
FbaI TGATCA 1 cut(s) 130
Fnu4HI GCNGC 1 cut(s) 257
FokI GGATG 1 cut(s) 140
Fsp4HI GCNGC 1 cut(s) 257
GlaI GCGC 1 cut(s) 146
GluI GCNGC 1 cut(s) 257
HhaI GCGC 1 cut(s) 147
Hin1II CATG 5 cut(s) 9, 28, 137, 175, 253
Hin6I GCGC 1 cut(s) 145
HinP1I GCGC 1 cut(s) 145
HinfI GANTC 2 cut(s) 59, 213
HphI GGTGA 1 cut(s) 230
Hpy188III TCNNGA 4 cut(s) 134, 155, 172, 244
HpyAV CCTTC 1 cut(s) 227
HpyCH4V TGCA 4 cut(s) 9, 19, 208, 259
HpyF10VI GCNNNNNNNGC 1 cut(s) 265
Hsp92II CATG 5 cut(s) 9, 28, 137, 175, 253
HspAI GCGC 1 cut(s) 145
Ksp22I TGATCA 1 cut(s) 130
Kzo9I GATC 1 cut(s) 130
LpnPI CCDG 3 cut(s) 103, 168, 229
Lsp1109I GCAGC 1 cut(s) 243
LweI GCATC 1 cut(s) 185
MalI GATC 1 cut(s) 132
MboI GATC 1 cut(s) 130
MboII GAAGA 3 cut(s) 59, 62, 68
MfeI CAATTG 1 cut(s) 201
MluCI AATT 1 cut(s) 201
MlyI GAGTC 1 cut(s) 222
MnlI CCTC 6 cut(s) 111, 118, 130, 157, 178, 251
Mph1103I ATGCAT 1 cut(s) 11
MseI TTAA 1 cut(s) 234
MunI CAATTG 1 cut(s) 201
MwoI GCNNNNNNNGC 1 cut(s) 265
NdeII GATC 1 cut(s) 130
NlaIII CATG 5 cut(s) 9, 28, 137, 175, 253
NsiI ATGCAT 1 cut(s) 11
NspI RCATGY 1 cut(s) 9
PagI TCATGA 2 cut(s) 133, 171
PfeI GAWTC 1 cut(s) 59
PkrI GCNGC 1 cut(s) 258
PleI GAGTC 1 cut(s) 221
PpsI GAGTC 1 cut(s) 221
PspPI GGNCC 1 cut(s) 246
SaqAI TTAA 1 cut(s) 234
SatI GCNGC 1 cut(s) 257
Sau3AI GATC 1 cut(s) 130
Sau96I GGNCC 1 cut(s) 246
SchI GAGTC 1 cut(s) 222
SetI ASST 4 cut(s) 122, 141, 243, 258
SfaNI GCATC 1 cut(s) 185
SinI GGWCC 1 cut(s) 246
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
Sse9I AATT 1 cut(s) 201
SsiI CCGC 1 cut(s) 274
StyI CCWWGG 1 cut(s) 95
TasI AATT 1 cut(s) 201
TfiI GAWTC 1 cut(s) 59
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TseI GCWGC 1 cut(s) 256
TspDTI ATGAA 3 cut(s) 69, 160, 266
VpaK11BI GGWCC 1 cut(s) 246
XceI RCATGY 1 cut(s) 9
Zsp2I ATGCAT 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.