Rmu_sc0000363.1_g000003

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000363.1
OG0019505
Physical Location & Seq
Reverse (-)
20724 .. 21125
402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000363.1_g000003.1.cds

Sequence Viewer

Length: 402 bp
atgcaggagtcatacagaaaagacgttgagagggcattcggaattctccaagctcgtttttcaatagtaagaggacccgcccgtggatgggatagagaggatctccaatacatcatgatgacctgcattattttgcacaacatgattgtggatgatgagcgtgaagaagatgaagagttgtctgttgaccccgatgatatccccaccagaccaaggaaagcacaaatatatgagaggtttgaggatgatcatgacgttgagcgcaaccgtcctgaacttgaggagttcatgacccattatgagggggttagatgcccaattgtgcatagagtcctaattcaaggagatttggttaatcacctctggaacatgaagctgcaagcagagcggaaccgcagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

133

Amino Acids

16.08

Weight (kDa)

5.04

Isoelectric Point (pI)

43.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 131
AccBSI CCGCTC 1 cut(s) 388
AciI CCGC 3 cut(s) 78, 388, 394
AclWI GGATC 1 cut(s) 108
AcsI RAATTY 1 cut(s) 42
AfiI CCNNNNNNNGG 5 cut(s) 83, 87, 88, 213, 301
AgsI TTSAA 2 cut(s) 63, 341
AluBI AGCT 2 cut(s) 53, 376
AluI AGCT 2 cut(s) 53, 376
AlwI GGATC 1 cut(s) 108
ApeKI GCWGC 1 cut(s) 376
ApoI RAATTY 1 cut(s) 42
AspLEI GCGC 1 cut(s) 264
AspS9I GGNCC 1 cut(s) 74
AsuHPI GGTGA 1 cut(s) 350
AvaII GGWCC 1 cut(s) 74
BbvI GCAGC 1 cut(s) 363
BccI CCATC 1 cut(s) 81
BclI TGATCA 1 cut(s) 247
BfuAI ACCTGC 1 cut(s) 131
BisI GCNGC 1 cut(s) 377
BlsI GCNGC 1 cut(s) 378
Bme18I GGWCC 1 cut(s) 74
BmgT120I GGNCC 1 cut(s) 74
BmiI GGNNCC 2 cut(s) 76, 392
BmsI GCATC 1 cut(s) 302
BplI GAGNNNNNCTC 2 cut(s) 87, 119
BpuEI CTTGAG 1 cut(s) 299
BsaJI CCNNGG 2 cut(s) 82, 212
BsaXI ACNNNNNCTCC 2 cut(s) 336, 366
Bsc4I CCNNNNNNNGG 5 cut(s) 83, 87, 88, 213, 301
BseDI CCNNGG 2 cut(s) 82, 212
BseGI GGATG 3 cut(s) 92, 157, 250
BseLI CCNNNNNNNGG 5 cut(s) 83, 87, 88, 213, 301
BseRI GAGGAG 1 cut(s) 296
BseXI GCAGC 1 cut(s) 363
BslI CCNNNNNNNGG 5 cut(s) 83, 87, 88, 213, 301
BsmI GAATGC 1 cut(s) 35
Bsp143I GATC 2 cut(s) 100, 247
BspACI CCGC 3 cut(s) 78, 388, 394
BspHI TCATGA 3 cut(s) 114, 250, 288
BspLI GGNNCC 2 cut(s) 76, 392
BspMI ACCTGC 1 cut(s) 131
BspPI GGATC 1 cut(s) 108
BsrBI CCGCTC 1 cut(s) 388
BssECI CCNNGG 2 cut(s) 82, 212
BssMI GATC 2 cut(s) 100, 247
BssT1I CCWWGG 1 cut(s) 212
Bst4CI ACNGT 1 cut(s) 269
Bst6I CTCTTC 1 cut(s) 168
BstC8I GCNNGC 1 cut(s) 381
BstDSI CCRYGG 1 cut(s) 82
BstF5I GGATG 3 cut(s) 92, 157, 250
BstHHI GCGC 1 cut(s) 264
BstKTI GATC 2 cut(s) 103, 250
BstMBI GATC 2 cut(s) 100, 247
BstMWI GCNNNNNNNGC 1 cut(s) 385
BstV1I GCAGC 1 cut(s) 363
BstX2I RGATCY 1 cut(s) 100
BstYI RGATCY 1 cut(s) 100
BtgI CCRYGG 1 cut(s) 82
BtsCI GGATG 3 cut(s) 92, 157, 250
BveI ACCTGC 1 cut(s) 131
Cac8I GCNNGC 1 cut(s) 381
CciI TCATGA 3 cut(s) 114, 250, 288
CfoI GCGC 1 cut(s) 264
Cfr13I GGNCC 1 cut(s) 74
CviAII CATG 5 cut(s) 115, 142, 251, 289, 370
CviJI RGCY 2 cut(s) 53, 376
CviKI_1 RGCY 2 cut(s) 53, 376
DpnI GATC 2 cut(s) 102, 249
DpnII GATC 2 cut(s) 100, 247
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
Eco130I CCWWGG 1 cut(s) 212
Eco32I GATATC 1 cut(s) 199
Eco47I GGWCC 1 cut(s) 74
EcoO109I RGGNCCY 1 cut(s) 74
EcoRI GAATTC 1 cut(s) 42
EcoRV GATATC 1 cut(s) 199
EcoT14I CCWWGG 1 cut(s) 212
ErhI CCWWGG 1 cut(s) 212
FaeI CATG 5 cut(s) 118, 145, 254, 292, 373
FatI CATG 5 cut(s) 114, 141, 250, 288, 369
FauI CCCGC 1 cut(s) 85
FbaI TGATCA 1 cut(s) 247
Fnu4HI GCNGC 1 cut(s) 377
FokI GGATG 3 cut(s) 99, 164, 257
Fsp4HI GCNGC 1 cut(s) 377
GlaI GCGC 1 cut(s) 263
GluI GCNGC 1 cut(s) 377
HhaI GCGC 1 cut(s) 264
Hin1II CATG 5 cut(s) 118, 145, 254, 292, 373
Hin6I GCGC 1 cut(s) 262
HinP1I GCGC 1 cut(s) 262
HincII GTYRAC 1 cut(s) 187
HindII GTYRAC 1 cut(s) 187
HinfI GANTC 2 cut(s) 8, 330
HphI GGTGA 1 cut(s) 350
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 1 cut(s) 41
Hpy188III TCNNGA 5 cut(s) 115, 251, 272, 289, 364
Hpy8I GTNNAC 1 cut(s) 187
HpyCH4III ACNGT 1 cut(s) 269
HpyCH4IV ACGT 2 cut(s) 24, 255
HpyCH4V TGCA 5 cut(s) 4, 126, 136, 325, 379
HpyF10VI GCNNNNNNNGC 1 cut(s) 385
HpySE526I ACGT 2 cut(s) 24, 255
Hsp92II CATG 5 cut(s) 118, 145, 254, 292, 373
HspAI GCGC 1 cut(s) 262
Ksp22I TGATCA 1 cut(s) 247
Kzo9I GATC 2 cut(s) 100, 247
LpnPI CCDG 4 cut(s) 136, 220, 285, 349
Lsp1109I GCAGC 1 cut(s) 363
LweI GCATC 1 cut(s) 302
MaeII ACGT 2 cut(s) 24, 255
MalI GATC 2 cut(s) 102, 249
MbiI CCGCTC 1 cut(s) 388
MboI GATC 2 cut(s) 100, 247
MboII GAAGA 3 cut(s) 176, 179, 185
MfeI CAATTG 1 cut(s) 318
MflI RGATCY 1 cut(s) 100
MluCI AATT 3 cut(s) 42, 318, 336
MlyI GAGTC 2 cut(s) 17, 339
MnlI CCTC 8 cut(s) 24, 65, 91, 228, 235, 274, 295, 371
MseI TTAA 1 cut(s) 354
MslI CAYNNNNRTG 2 cut(s) 116, 146
MunI CAATTG 1 cut(s) 318
Mva1269I GAATGC 1 cut(s) 35
MwoI GCNNNNNNNGC 1 cut(s) 385
NdeII GATC 2 cut(s) 100, 247
NlaIII CATG 5 cut(s) 118, 145, 254, 292, 373
NlaIV GGNNCC 2 cut(s) 76, 392
PagI TCATGA 3 cut(s) 114, 250, 288
PctI GAATGC 1 cut(s) 35
PkrI GCNGC 1 cut(s) 378
PleI GAGTC 2 cut(s) 16, 338
PpsI GAGTC 2 cut(s) 16, 338
PpuMI RGGWCCY 1 cut(s) 74
Psp5II RGGWCCY 1 cut(s) 74
PspN4I GGNNCC 2 cut(s) 76, 392
PspPI GGNCC 1 cut(s) 74
PspPPI RGGWCCY 1 cut(s) 74
PsuI RGATCY 1 cut(s) 100
RseI CAYNNNNRTG 2 cut(s) 116, 146
SaqAI TTAA 1 cut(s) 354
SatI GCNGC 1 cut(s) 377
Sau3AI GATC 2 cut(s) 100, 247
Sau96I GGNCC 1 cut(s) 74
SchI GAGTC 2 cut(s) 17, 339
SetI ASST 7 cut(s) 27, 55, 125, 239, 258, 363, 378
SfaNI GCATC 1 cut(s) 302
SinI GGWCC 1 cut(s) 74
SmiMI CAYNNNNRTG 2 cut(s) 116, 146
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
Sse9I AATT 3 cut(s) 42, 318, 336
SsiI CCGC 3 cut(s) 78, 388, 394
StyI CCWWGG 1 cut(s) 212
TaaI ACNGT 1 cut(s) 269
TaiI ACGT 2 cut(s) 27, 258
TasI AATT 3 cut(s) 42, 318, 336
Tru1I TTAA 1 cut(s) 354
Tru9I TTAA 1 cut(s) 354
TseI GCWGC 1 cut(s) 376
TspDTI ATGAA 3 cut(s) 186, 277, 386
VpaK11BI GGWCC 1 cut(s) 74
XapI RAATTY 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.