Rmu_sc0000051.1_g000004

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000051.1
OG0014902
Physical Location & Seq
Reverse (-)
14472 .. 14933
462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000051.1_g000004.1.cds

Sequence Viewer

Length: 462 bp
atggcccagatgggttttctctgccactacattctctttgctttcctttcttactctgctcactcccgcaacttaccggcggccaccaccacctccaaaacgacggtgctcgacgttgccgcttccattcaggaggccctaaacgccatgtcgtccgagcactactcttacagtggagccactcagtcattgagccaagaaccccaaaccttgtcagtttcatctgcactctctcttcagctacattcccgaatttcactccaccagcattctcacaacgactacaagtcgctcactttggctcgactcgggcgcgactccgcccgagtcagatctctgaccaccaggttagatctggcggttagaggcattgccacgtcggatctcaaacccgtcgatacccaacatttcggtaccgacgggttcgagagccccgtggtttcggggacgagtgaaagctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

153

Amino Acids

16.55

Weight (kDa)

6.69

Isoelectric Point (pI)

50.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014902)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25510
fragaria_vesca FvH4_4g27770
malus_domestica MD13G1044900.v1.1
prunus_persica Prupe.1G307100_v2.0.a1
pyrus_communis pycom13g03970 pycom16g04080
rosa_chinensis RchiOBHm_Chr4g0435631
rosa_laevigata RLG00000006575
rosa_multiflora Rmu_sc0000051.1_g000004
rosa_roxburghii Rroxscaffold_5G00376850
rosa_rugosa Rorug04G0287400
rosa_samantha Rh4AG342600 Rh4BG350900 Rh4CG365600 Rh4DG345300
rosa_wichuraiana Rw4G029900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 413
AccB1I GGYRCC 1 cut(s) 413
AccII CGCG 1 cut(s) 315
AciI CCGC 5 cut(s) 67, 80, 120, 321, 359
AclWI GGATC 1 cut(s) 390
AcoI YGGCCR 1 cut(s) 81
AcsI RAATTY 1 cut(s) 252
AcuI CTGAAG 1 cut(s) 221
AfaI GTAC 1 cut(s) 415
AhdI GACNNNNNGTC 1 cut(s) 286
AjiI CACGTC 1 cut(s) 378
AjnI CCWGG 1 cut(s) 344
AluBI AGCT 2 cut(s) 241, 459
AluI AGCT 2 cut(s) 241, 459
Alw21I GWGCWC 2 cut(s) 111, 162
AlwI GGATC 1 cut(s) 390
Ama87I CYCGRG 2 cut(s) 308, 324
AoxI GGCC 3 cut(s) 3, 81, 135
ApoI RAATTY 1 cut(s) 252
Asp718I GGTACC 1 cut(s) 413
AspLEI GCGC 1 cut(s) 315
AspS9I GGNCC 2 cut(s) 4, 136
AvaI CYCGRG 2 cut(s) 308, 324
BanI GGYRCC 1 cut(s) 413
BanII GRGCYC 1 cut(s) 434
Bbv12I GWGCWC 2 cut(s) 111, 162
BccI CCATC 1 cut(s) 4
BciT130I CCWGG 1 cut(s) 346
BfaI CTAG 1 cut(s) 460
BglII AGATCT 2 cut(s) 332, 352
BisI GCNGC 2 cut(s) 81, 120
BlsI GCNGC 2 cut(s) 82, 121
Bme1390I CCNGG 1 cut(s) 346
BmeRI GACNNNNNGTC 1 cut(s) 286
BmeT110I CYCGRG 2 cut(s) 308, 324
BmgBI CACGTC 1 cut(s) 378
BmgT120I GGNCC 2 cut(s) 4, 136
BmiI GGNNCC 2 cut(s) 178, 415
BmrFI CCNGG 1 cut(s) 346
BplI GAGNNNNNCTC 2 cut(s) 149, 181
BsaJI CCNNGG 1 cut(s) 435
Bse118I RCCGGY 1 cut(s) 76
Bse3DI GCAATG 1 cut(s) 369
BseBI CCWGG 1 cut(s) 346
BseDI CCNNGG 1 cut(s) 435
BseMI GCAATG 1 cut(s) 369
BseMII CTCAG 1 cut(s) 197
BsgI GTGCAG 1 cut(s) 210
Bsh1236I CGCG 1 cut(s) 315
BshFI GGCC 3 cut(s) 5, 83, 137
BshNI GGYRCC 1 cut(s) 413
BsiHKAI GWGCWC 2 cut(s) 111, 162
BsiHKCI CYCGRG 2 cut(s) 308, 324
BsiSI CCGG 1 cut(s) 77
BsmI GAATGC 1 cut(s) 268
BsnI GGCC 3 cut(s) 5, 83, 137
BsoBI CYCGRG 2 cut(s) 308, 324
Bsp1286I GDGCHC 3 cut(s) 111, 162, 434
Bsp143I GATC 3 cut(s) 332, 352, 382
BspACI CCGC 5 cut(s) 67, 80, 120, 321, 359
BspANI GGCC 3 cut(s) 5, 83, 137
BspCNI CTCAG 1 cut(s) 196
BspFNI CGCG 1 cut(s) 315
BspLI GGNNCC 2 cut(s) 178, 415
BspPI GGATC 1 cut(s) 390
BspT107I GGYRCC 1 cut(s) 413
BsrDI GCAATG 1 cut(s) 369
BsrFI RCCGGY 1 cut(s) 76
BssAI RCCGGY 1 cut(s) 76
BssECI CCNNGG 1 cut(s) 435
BssMI GATC 3 cut(s) 332, 352, 382
Bst2UI CCWGG 1 cut(s) 346
Bst4CI ACNGT 2 cut(s) 106, 173
Bst6I CTCTTC 1 cut(s) 240
BstDEI CTNAG 1 cut(s) 183
BstDSI CCRYGG 1 cut(s) 435
BstFNI CGCG 1 cut(s) 315
BstHHI GCGC 1 cut(s) 315
BstKTI GATC 3 cut(s) 335, 355, 385
BstMBI GATC 3 cut(s) 332, 352, 382
BstMWI GCNNNNNNNGC 1 cut(s) 143
BstNI CCWGG 1 cut(s) 346
BstSCI CCNGG 1 cut(s) 344
BstUI CGCG 1 cut(s) 315
BstX2I RGATCY 3 cut(s) 332, 352, 382
BstYI RGATCY 3 cut(s) 332, 352, 382
BsuRI GGCC 3 cut(s) 5, 83, 137
BtgI CCRYGG 1 cut(s) 435
BtrI CACGTC 1 cut(s) 378
BtsIMutI CAGTG 1 cut(s) 178
CfoI GCGC 1 cut(s) 315
Cfr10I RCCGGY 1 cut(s) 76
Cfr13I GGNCC 2 cut(s) 4, 136
CsiI ACCWGGT 1 cut(s) 344
Csp6I GTAC 1 cut(s) 414
CviAII CATG 1 cut(s) 148
CviJI RGCY 9 cut(s) 5, 83, 137, 179, 195, 241, 302, 432, 459
CviKI_1 RGCY 9 cut(s) 5, 83, 137, 179, 195, 241, 302, 432, 459
CviQI GTAC 1 cut(s) 414
DdeI CTNAG 1 cut(s) 183
DpnI GATC 3 cut(s) 334, 354, 384
DpnII GATC 3 cut(s) 332, 352, 382
DriI GACNNNNNGTC 1 cut(s) 286
EaeI YGGCCR 1 cut(s) 81
Eam1104I CTCTTC 1 cut(s) 240
Eam1105I GACNNNNNGTC 1 cut(s) 286
EarI CTCTTC 1 cut(s) 240
EciI GGCGGA 1 cut(s) 310
Eco24I GRGCYC 1 cut(s) 434
Eco57I CTGAAG 1 cut(s) 221
Eco88I CYCGRG 2 cut(s) 308, 324
EcoO109I RGGNCCY 1 cut(s) 136
EcoRII CCWGG 1 cut(s) 344
EcoT38I GRGCYC 1 cut(s) 434
FaeI CATG 1 cut(s) 151
FaiI YATR 1 cut(s) 149
FatI CATG 1 cut(s) 147
FauI CCCGC 1 cut(s) 74
Fnu4HI GCNGC 2 cut(s) 81, 120
FriOI GRGCYC 1 cut(s) 434
Fsp4HI GCNGC 2 cut(s) 81, 120
FspBI CTAG 1 cut(s) 460
GlaI GCGC 1 cut(s) 314
GluI GCNGC 2 cut(s) 81, 120
HaeIII GGCC 3 cut(s) 5, 83, 137
HapII CCGG 1 cut(s) 77
HhaI GCGC 1 cut(s) 315
Hin1II CATG 1 cut(s) 151
Hin6I GCGC 1 cut(s) 313
HinP1I GCGC 1 cut(s) 313
HinfI GANTC 3 cut(s) 306, 317, 327
HpaII CCGG 1 cut(s) 77
Hpy188I TCNGA 4 cut(s) 157, 332, 339, 382
Hpy188III TCNNGA 3 cut(s) 131, 249, 427
Hpy99I CGWCG 5 cut(s) 106, 116, 382, 398, 422
HpyCH4III ACNGT 2 cut(s) 106, 173
HpyCH4IV ACGT 2 cut(s) 114, 377
HpyCH4V TGCA 1 cut(s) 227
HpyF10VI GCNNNNNNNGC 1 cut(s) 143
HpyF3I CTNAG 1 cut(s) 183
HpySE526I ACGT 2 cut(s) 114, 377
Hsp92II CATG 1 cut(s) 151
HspAI GCGC 1 cut(s) 313
KpnI GGTACC 1 cut(s) 417
Kzo9I GATC 3 cut(s) 332, 352, 382
LmnI GCTCC 1 cut(s) 176
LpnPI CCDG 7 cut(s) 20, 90, 116, 278, 331, 341, 358
MabI ACCWGGT 1 cut(s) 344
MaeI CTAG 1 cut(s) 460
MaeII ACGT 2 cut(s) 114, 377
MalI GATC 3 cut(s) 334, 354, 384
MboI GATC 3 cut(s) 332, 352, 382
MboII GAAGA 1 cut(s) 227
MflI RGATCY 3 cut(s) 332, 352, 382
MhlI GDGCHC 3 cut(s) 111, 162, 434
MluCI AATT 1 cut(s) 252
MlyI GAGTC 3 cut(s) 300, 311, 336
MmeI TCCRAC 1 cut(s) 360
MnlI CCTC 3 cut(s) 103, 127, 359
MspI CCGG 1 cut(s) 77
MspR9I CCNGG 1 cut(s) 346
Mva1269I GAATGC 1 cut(s) 268
MvaI CCWGG 1 cut(s) 346
MvnI CGCG 1 cut(s) 315
MwoI GCNNNNNNNGC 1 cut(s) 143
NdeII GATC 3 cut(s) 332, 352, 382
NlaIII CATG 1 cut(s) 151
NlaIV GGNNCC 2 cut(s) 178, 415
PcsI WCGNNNNNNNCGW 1 cut(s) 432
PctI GAATGC 1 cut(s) 268
PkrI GCNGC 2 cut(s) 82, 121
PleI GAGTC 3 cut(s) 300, 311, 335
PpsI GAGTC 3 cut(s) 300, 311, 335
Psp6I CCWGG 1 cut(s) 344
PspGI CCWGG 1 cut(s) 344
PspN4I GGNNCC 2 cut(s) 178, 415
PspPI GGNCC 2 cut(s) 4, 136
PsuI RGATCY 3 cut(s) 332, 352, 382
RsaI GTAC 1 cut(s) 415
RsaNI GTAC 1 cut(s) 414
SatI GCNGC 2 cut(s) 81, 120
Sau3AI GATC 3 cut(s) 332, 352, 382
Sau96I GGNCC 2 cut(s) 4, 136
SchI GAGTC 3 cut(s) 300, 311, 336
ScrFI CCNGG 1 cut(s) 346
SduI GDGCHC 3 cut(s) 111, 162, 434
SetI ASST 7 cut(s) 95, 117, 212, 243, 350, 380, 461
SexAI ACCWGGT 1 cut(s) 344
Sse9I AATT 1 cut(s) 252
SsiI CCGC 5 cut(s) 67, 80, 120, 321, 359
SspMI CTAG 1 cut(s) 460
StyD4I CCNGG 1 cut(s) 344
TaaI ACNGT 2 cut(s) 106, 173
TaiI ACGT 2 cut(s) 117, 380
TaqI TCGA 4 cut(s) 111, 304, 396, 426
TasI AATT 1 cut(s) 252
TauI GCSGC 2 cut(s) 83, 122
TscAI CASTG 1 cut(s) 178
TspDTI ATGAA 1 cut(s) 210
TspRI CASTG 1 cut(s) 178
XapI RAATTY 1 cut(s) 252
XcmI CCANNNNNNNNNTGG 1 cut(s) 352
XspI CTAG 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.