Rorug04G0287400

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0014902
Physical Location & Seq
Forward (+)
46081782 .. 46083594
1813 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0287400.1

Sequence Viewer

Length: 1098 bp
ATGGGTGGCCTATTTTCAGATGGAAAATTCATTCTTGGCATTGTTTTTGCACTCTGGAGAATGTGTTCAGCAAAAGAAACTCCTGCTAATTTTGTGTTTGGCGATTCTCTAGTTGAAGTGGGGAACAACAACTATATTGTGACTCTCTCCAAGGCTGATTATCCTCCCAATGGAATCGATTTCGGAAAGCCTACCGGGAGATACACAAATGGAAGAACCATCATTGACATTATAGGTCAGACTCTTGGTTTTAAGGGGTTCACTCCTCCTTACTTAGCTCCCACAACAGCCGGACCAGTAATTCTGAGTGGTGTTAACTATGCTTCAGGTGGAGGTGGAATTCTTAATGAAACAGGAAAAATATTTGTTGGTAGAATAAACTTGGATGCACAGATAGATAACTTTGCAAATACCAGGCAAGACATTATCTCAAGAATCGATCTTCCTGCAGCTCTAAAGTTACTTAGAAGAGCTCTGTTCTCAGTAACAATCGGCTCGAATGATTTCATCAATAACTACTTGGCGCCAATTATATCTGAGACGGAGAGGAAGTCGATACCTCCGGAAACCTTTGTTGGCATTTTGATCGCAAGACTCAGACTACAAATTACAAGACTGTACAATTTGGGTGCAAGGAAGATGGTTGTGGTAAATGTAGGACCTATTGGGTGTATACCTTATCAGAGGGAAGTAAATCAAGCTGATCCAGAGAGCTGTGTGGAATTTTCGAATCAACTAGCACGGTCATTCAATGCCAAGCTCAGGACCCTTGTCACCGAGCTAAACAAGAACCTTCCTACGGCCAATTTTGTTTATGCAGATGTTTATAGTATTGTGGAAGACATTATTGAGAACTACATATCATATGGTTTCGAGAATGCAAACTCTGCATGCTGCAGAGTAGCAGGGCGCTACGGGGGTCTAATTCCATGCGGTCCTCAGCCATCAAAAGTTTGCGTGGACCGGTCGAAGTATGTGTTTTGGGATGCTTACCATCCTTCTGATGCTTCTAATATGATCATAGCAAGGCGTCTCTTGTATGGGAACTCCTGTGATATTTCACCCATGAATGTAGAACAACTTCTCCAAGCTTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

365

Amino Acids

39.98

Weight (kDa)

8.34

Isoelectric Point (pI)

31.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 31 - 344 5.1e-33 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014902)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25510
fragaria_vesca FvH4_4g27770
malus_domestica MD13G1044900.v1.1
prunus_persica Prupe.1G307100_v2.0.a1
pyrus_communis pycom13g03970 pycom16g04080
rosa_chinensis RchiOBHm_Chr4g0435631
rosa_laevigata RLG00000006575
rosa_multiflora Rmu_sc0000051.1_g000004
rosa_roxburghii Rroxscaffold_5G00376850
rosa_rugosa Rorug04G0287400
rosa_samantha Rh4AG342600 Rh4BG350900 Rh4CG365600 Rh4DG345300
rosa_wichuraiana Rw4G029900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 523
AccI GTMKAC 1 cut(s) 673
AccIII TCCGGA 1 cut(s) 562
AciI CCGC 1 cut(s) 933
AclWI GGATC 1 cut(s) 698
AcoI YGGCCR 1 cut(s) 801
AcsI RAATTY 3 cut(s) 26, 339, 722
AcuI CTGAAG 1 cut(s) 309
AcyI GRCGYC 2 cut(s) 524, 1030
AfaI GTAC 1 cut(s) 620
AfiI CCNNNNNNNGG 3 cut(s) 170, 762, 799
AgeI ACCGGT 1 cut(s) 963
AgsI TTSAA 2 cut(s) 116, 751
AjnI CCWGG 1 cut(s) 413
AjuI GAANNNNNNNTTGG 2 cut(s) 558, 590
AloI GAACNNNNNNTCC 3 cut(s) 49, 81, 1068
AluBI AGCT 8 cut(s) 278, 452, 473, 701, 714, 760, 781, 1091
AluI AGCT 8 cut(s) 278, 452, 473, 701, 714, 760, 781, 1091
Alw21I GWGCWC 1 cut(s) 475
Alw26I GTCTC 2 cut(s) 533, 1037
AlwI GGATC 1 cut(s) 698
Aor13HI TCCGGA 1 cut(s) 562
AoxI GGCC 2 cut(s) 7, 801
ApeKI GCWGC 2 cut(s) 449, 894
ApoI RAATTY 3 cut(s) 26, 339, 722
AsiGI ACCGGT 1 cut(s) 963
Asp700I GAANNNNTTC 3 cut(s) 64, 503, 1080
AspLEI GCGC 2 cut(s) 526, 912
AspS9I GGNCC 5 cut(s) 293, 659, 765, 935, 961
AsuC2I CCSGG 1 cut(s) 196
AsuHPI GGTGA 2 cut(s) 766, 1053
AsuII TTCGAA 1 cut(s) 728
AvaII GGWCC 5 cut(s) 293, 659, 765, 935, 961
BanI GGYRCC 1 cut(s) 523
BanII GRGCYC 1 cut(s) 475
BarI GAAGNNNNNNTAC 2 cut(s) 1065, 1097
BbsI GAAGAC 1 cut(s) 846
Bbv12I GWGCWC 1 cut(s) 475
BbvCI CCTCAGC 1 cut(s) 939
BbvI GCAGC 2 cut(s) 461, 881
BccI CCATC 5 cut(s) 14, 227, 634, 952, 1002
BceAI ACGGC 1 cut(s) 816
BcgI CGANNNNNNTGC 4 cut(s) 428, 462, 568, 602
BciT130I CCWGG 1 cut(s) 415
BclI TGATCA 1 cut(s) 1017
BcnI CCSGG 1 cut(s) 196
BcoDI GTCTC 2 cut(s) 533, 1037
BfaI CTAG 2 cut(s) 110, 737
BfmI CTRYAG 2 cut(s) 447, 895
BfoI RGCGCY 2 cut(s) 527, 913
BisI GCNGC 2 cut(s) 450, 895
BlsI GCNGC 2 cut(s) 451, 896
Bme1390I CCNGG 2 cut(s) 196, 415
Bme18I GGWCC 5 cut(s) 293, 659, 765, 935, 961
BmgT120I GGNCC 5 cut(s) 293, 659, 765, 935, 961
BmiI GGNNCC 2 cut(s) 525, 767
BmrFI CCNGG 2 cut(s) 196, 415
BmsI GCATC 3 cut(s) 376, 976, 994
BoxI GACNNNNGTC 1 cut(s) 770
BpiI GAAGAC 1 cut(s) 846
BpmI CTGGAG 1 cut(s) 76
Bpu10I CCTNAGC 2 cut(s) 761, 939
Bpu14I TTCGAA 1 cut(s) 728
BpuEI CTTGAG 1 cut(s) 415
BpuMI CCSGG 1 cut(s) 196
Bsa29I ATCGAT 2 cut(s) 177, 438
BsaHI GRCGYC 2 cut(s) 524, 1030
BsaJI CCNNGG 1 cut(s) 150
BsaWI WCCGGW 2 cut(s) 562, 963
BsaXI ACNNNNNCTCC 6 cut(s) 49, 79, 536, 566, 1068, 1098
Bsc4I CCNNNNNNNGG 3 cut(s) 170, 762, 799
Bse118I RCCGGY 1 cut(s) 963
Bse1I ACTGG 1 cut(s) 296
BseAI TCCGGA 1 cut(s) 562
BseBI CCWGG 1 cut(s) 415
BseCI ATCGAT 2 cut(s) 177, 438
BseDI CCNNGG 1 cut(s) 150
BseGI GGATG 3 cut(s) 391, 991, 994
BseLI CCNNNNNNNGG 3 cut(s) 170, 762, 799
BseMII CTCAG 6 cut(s) 296, 495, 528, 610, 775, 953
BseNI ACTGG 1 cut(s) 296
BseRI GAGGAG 1 cut(s) 255
BseXI GCAGC 2 cut(s) 461, 881
Bsh1285I CGRYCG 1 cut(s) 968
BshFI GGCC 2 cut(s) 9, 803
BshNI GGYRCC 1 cut(s) 523
BshTI ACCGGT 1 cut(s) 963
BshVI ATCGAT 2 cut(s) 177, 438
BsiEI CGRYCG 1 cut(s) 968
BsiHKAI GWGCWC 1 cut(s) 475
BsiSI CCGG 4 cut(s) 195, 291, 563, 964
BslI CCNNNNNNNGG 3 cut(s) 170, 762, 799
BsmAI GTCTC 2 cut(s) 533, 1037
BsmBI CGTCTC 2 cut(s) 533, 1037
BsmI GAATGC 1 cut(s) 883
BsnI GGCC 2 cut(s) 9, 803
Bsp119I TTCGAA 1 cut(s) 728
Bsp1286I GDGCHC 1 cut(s) 475
Bsp13I TCCGGA 1 cut(s) 562
Bsp1407I TGTACA 1 cut(s) 618
Bsp143I GATC 4 cut(s) 439, 585, 703, 1017
BspACI CCGC 1 cut(s) 933
BspANI GGCC 2 cut(s) 9, 803
BspCNI CTCAG 6 cut(s) 297, 494, 529, 609, 774, 952
BspDI ATCGAT 2 cut(s) 177, 438
BspEI TCCGGA 1 cut(s) 562
BspLI GGNNCC 2 cut(s) 525, 767
BspMAI CTGCAG 2 cut(s) 451, 899
BspPI GGATC 1 cut(s) 698
BspQI GCTCTTC 1 cut(s) 463
BspT104I TTCGAA 1 cut(s) 728
BspT107I GGYRCC 1 cut(s) 523
BsrFI RCCGGY 1 cut(s) 963
BsrGI TGTACA 1 cut(s) 618
BsrI ACTGG 1 cut(s) 296
BssAI RCCGGY 1 cut(s) 963
BssECI CCNNGG 1 cut(s) 150
BssMI GATC 4 cut(s) 439, 585, 703, 1017
BssNAI GTATAC 1 cut(s) 674
BssNI GRCGYC 2 cut(s) 524, 1030
BssT1I CCWWGG 1 cut(s) 150
Bst1107I GTATAC 1 cut(s) 674
Bst2UI CCWGG 1 cut(s) 415
Bst4CI ACNGT 2 cut(s) 618, 744
Bst6I CTCTTC 1 cut(s) 463
BstACI GRCGYC 2 cut(s) 524, 1030
BstAPI GCANNNNNTGC 1 cut(s) 887
BstAUI TGTACA 1 cut(s) 618
BstBI TTCGAA 1 cut(s) 728
BstC8I GCNNGC 1 cut(s) 892
BstDEI CTNAG 8 cut(s) 274, 305, 464, 481, 537, 596, 761, 939
BstF5I GGATG 3 cut(s) 391, 991, 994
BstH2I RGCGCY 2 cut(s) 527, 913
BstHHI GCGC 2 cut(s) 526, 912
BstKTI GATC 4 cut(s) 442, 588, 706, 1020
BstMAI GTCTC 2 cut(s) 533, 1037
BstMBI GATC 4 cut(s) 439, 585, 703, 1017
BstMCI CGRYCG 1 cut(s) 968
BstMWI GCNNNNNNNGC 1 cut(s) 887
BstNI CCWGG 1 cut(s) 415
BstNSI RCATGY 1 cut(s) 894
BstPAI GACNNNNGTC 1 cut(s) 770
BstSCI CCNGG 2 cut(s) 194, 413
BstSFI CTRYAG 2 cut(s) 447, 895
BstV1I GCAGC 2 cut(s) 461, 881
BstV2I GAAGAC 1 cut(s) 846
BstZ17I GTATAC 1 cut(s) 674
Bsu15I ATCGAT 2 cut(s) 177, 438
BsuRI GGCC 2 cut(s) 9, 803
BsuTUI ATCGAT 2 cut(s) 177, 438
BtsCI GGATG 3 cut(s) 391, 991, 994
Cac8I GCNNGC 1 cut(s) 892
CfoI GCGC 2 cut(s) 526, 912
Cfr10I RCCGGY 1 cut(s) 963
Cfr13I GGNCC 5 cut(s) 293, 659, 765, 935, 961
ClaI ATCGAT 2 cut(s) 177, 438
CseI GACGC 1 cut(s) 1019
Csp6I GTAC 1 cut(s) 619
CspAI ACCGGT 1 cut(s) 963
CviAII CATG 3 cut(s) 891, 930, 1066
CviQI GTAC 1 cut(s) 619
DdeI CTNAG 8 cut(s) 274, 305, 464, 481, 537, 596, 761, 939
DinI GGCGCC 1 cut(s) 525
DpnI GATC 4 cut(s) 441, 587, 705, 1019
DpnII GATC 4 cut(s) 439, 585, 703, 1017
EaeI YGGCCR 1 cut(s) 801
Eam1104I CTCTTC 1 cut(s) 463
EarI CTCTTC 1 cut(s) 463
Ecl136II GAGCTC 1 cut(s) 473
Eco130I CCWWGG 1 cut(s) 150
Eco24I GRGCYC 1 cut(s) 475
Eco47I GGWCC 5 cut(s) 293, 659, 765, 935, 961
Eco53kI GAGCTC 1 cut(s) 473
Eco57I CTGAAG 1 cut(s) 309
EcoICRI GAGCTC 1 cut(s) 473
EcoO109I RGGNCCY 2 cut(s) 659, 765
EcoRI GAATTC 1 cut(s) 339
EcoRII CCWGG 1 cut(s) 413
EcoT14I CCWWGG 1 cut(s) 150
EcoT38I GRGCYC 1 cut(s) 475
EgeI GGCGCC 1 cut(s) 525
EheI GGCGCC 1 cut(s) 525
ErhI CCWWGG 1 cut(s) 150
Esp3I CGTCTC 2 cut(s) 533, 1037
FaeI CATG 3 cut(s) 894, 933, 1069
FatI CATG 3 cut(s) 890, 929, 1065
FauNDI CATATG 1 cut(s) 865
FbaI TGATCA 1 cut(s) 1017
FblI GTMKAC 1 cut(s) 673
Fnu4HI GCNGC 2 cut(s) 450, 895
FokI GGATG 3 cut(s) 398, 981, 998
FriOI GRGCYC 1 cut(s) 475
Fsp4HI GCNGC 2 cut(s) 450, 895
FspBI CTAG 2 cut(s) 110, 737
GlaI GCGC 2 cut(s) 525, 911
GluI GCNGC 2 cut(s) 450, 895
GsuI CTGGAG 1 cut(s) 76
HaeII RGCGCY 2 cut(s) 527, 913
HaeIII GGCC 2 cut(s) 9, 803
HapII CCGG 4 cut(s) 195, 291, 563, 964
HgaI GACGC 1 cut(s) 1019
HhaI GCGC 2 cut(s) 526, 912
Hin1I GRCGYC 2 cut(s) 524, 1030
Hin1II CATG 3 cut(s) 894, 933, 1069
Hin6I GCGC 2 cut(s) 524, 910
HinP1I GCGC 2 cut(s) 524, 910
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HindIII AAGCTT 1 cut(s) 1089
HinfI GANTC 7 cut(s) 104, 142, 174, 241, 435, 594, 730
HpaI GTTAAC 1 cut(s) 316
HpaII CCGG 4 cut(s) 195, 291, 563, 964
HphI GGTGA 2 cut(s) 766, 1053
Hpy166II GTNNAC 4 cut(s) 261, 316, 674, 961
Hpy188I TCNGA 8 cut(s) 19, 185, 240, 306, 538, 599, 684, 1003
Hpy188III TCNNGA 7 cut(s) 55, 432, 563, 707, 763, 874, 1095
Hpy8I GTNNAC 4 cut(s) 261, 316, 674, 961
HpyAV CCTTC 2 cut(s) 803, 1008
HpyCH4III ACNGT 2 cut(s) 618, 744
HpyCH4V TGCA 9 cut(s) 50, 389, 407, 449, 632, 818, 881, 890, 897
HpyF10VI GCNNNNNNNGC 1 cut(s) 887
HpyF3I CTNAG 8 cut(s) 274, 305, 464, 481, 537, 596, 761, 939
Hsp92I GRCGYC 2 cut(s) 524, 1030
Hsp92II CATG 3 cut(s) 894, 933, 1069
HspAI GCGC 2 cut(s) 524, 910
KasI GGCGCC 1 cut(s) 523
Kpn2I TCCGGA 1 cut(s) 562
Ksp22I TGATCA 1 cut(s) 1017
KspAI GTTAAC 1 cut(s) 316
Kzo9I GATC 4 cut(s) 439, 585, 703, 1017
LguI GCTCTTC 1 cut(s) 463
LmnI GCTCC 1 cut(s) 283
Lsp1109I GCAGC 2 cut(s) 461, 881
LweI GCATC 3 cut(s) 376, 976, 994
MaeI CTAG 2 cut(s) 110, 737
MaeIII GTNAC 4 cut(s) 139, 459, 484, 772
MalI GATC 4 cut(s) 441, 587, 705, 1019
MboI GATC 4 cut(s) 439, 585, 703, 1017
MboII GAAGA 5 cut(s) 225, 434, 480, 649, 851
MhlI GDGCHC 1 cut(s) 475
Mly113I GGCGCC 1 cut(s) 524
MlyI GAGTC 3 cut(s) 136, 235, 588
MnlI CCTC 7 cut(s) 174, 276, 326, 540, 570, 678, 948
MroI TCCGGA 1 cut(s) 562
MroXI GAANNNNTTC 3 cut(s) 64, 503, 1080
MseI TTAA 3 cut(s) 252, 315, 345
MspI CCGG 4 cut(s) 195, 291, 563, 964
MspR9I CCNGG 2 cut(s) 196, 415
Mva1269I GAATGC 1 cut(s) 883
MvaI CCWGG 1 cut(s) 415
MwoI GCNNNNNNNGC 1 cut(s) 887
NarI GGCGCC 1 cut(s) 524
NciI CCSGG 1 cut(s) 196
NdeI CATATG 1 cut(s) 865
NdeII GATC 4 cut(s) 439, 585, 703, 1017
NlaIII CATG 3 cut(s) 894, 933, 1069
NlaIV GGNNCC 2 cut(s) 525, 767
NmuCI GTSAC 2 cut(s) 139, 772
NspI RCATGY 1 cut(s) 894
NspV TTCGAA 1 cut(s) 728
PaeI GCATGC 1 cut(s) 894
PciSI GCTCTTC 1 cut(s) 463
PctI GAATGC 1 cut(s) 883
PdmI GAANNNNTTC 3 cut(s) 64, 503, 1080
PfeI GAWTC 4 cut(s) 104, 174, 435, 730
PinAI ACCGGT 1 cut(s) 963
PkrI GCNGC 2 cut(s) 451, 896
PleI GAGTC 3 cut(s) 136, 235, 588
PluTI GGCGCC 1 cut(s) 527
PpsI GAGTC 3 cut(s) 136, 235, 588
PpuMI RGGWCCY 2 cut(s) 659, 765
PshAI GACNNNNGTC 1 cut(s) 770
Psp124BI GAGCTC 1 cut(s) 475
Psp5II RGGWCCY 2 cut(s) 659, 765
Psp6I CCWGG 1 cut(s) 413
PspGI CCWGG 1 cut(s) 413
PspN4I GGNNCC 2 cut(s) 525, 767
PspPI GGNCC 5 cut(s) 293, 659, 765, 935, 961
PspPPI RGGWCCY 2 cut(s) 659, 765
PstI CTGCAG 2 cut(s) 451, 899
RsaI GTAC 1 cut(s) 620
RsaNI GTAC 1 cut(s) 619
SacI GAGCTC 1 cut(s) 475
SapI GCTCTTC 1 cut(s) 463
SaqAI TTAA 3 cut(s) 252, 315, 345
SatI GCNGC 2 cut(s) 450, 895
Sau3AI GATC 4 cut(s) 439, 585, 703, 1017
Sau96I GGNCC 5 cut(s) 293, 659, 765, 935, 961
SchI GAGTC 3 cut(s) 136, 235, 588
ScrFI CCNGG 2 cut(s) 196, 415
SduI GDGCHC 1 cut(s) 475
SfaNI GCATC 3 cut(s) 376, 976, 994
SfcI CTRYAG 2 cut(s) 447, 895
SfoI GGCGCC 1 cut(s) 525
SfuI TTCGAA 1 cut(s) 728
SinI GGWCC 5 cut(s) 293, 659, 765, 935, 961
SmlI CTYRAG 1 cut(s) 430
SmoI CTYRAG 1 cut(s) 430
SphI GCATGC 1 cut(s) 894
SsiI CCGC 1 cut(s) 933
SspDI GGCGCC 1 cut(s) 523
SspI AATATT 1 cut(s) 363
SspMI CTAG 2 cut(s) 110, 737
SstI GAGCTC 1 cut(s) 475
StyD4I CCNGG 2 cut(s) 194, 413
StyI CCWWGG 1 cut(s) 150
TaaI ACNGT 2 cut(s) 618, 744
TaqI TCGA 7 cut(s) 177, 438, 497, 554, 728, 873, 968
TatI WGTACW 1 cut(s) 618
TfiI GAWTC 4 cut(s) 104, 174, 435, 730
Tru1I TTAA 3 cut(s) 252, 315, 345
Tru9I TTAA 3 cut(s) 252, 315, 345
TseFI GTSAC 2 cut(s) 139, 772
TseI GCWGC 2 cut(s) 449, 894
Tsp45I GTSAC 2 cut(s) 139, 772
TspDTI ATGAA 4 cut(s) 19, 363, 496, 1082
TspGWI ACGGA 1 cut(s) 557
VpaK11BI GGWCC 5 cut(s) 293, 659, 765, 935, 961
XapI RAATTY 3 cut(s) 26, 339, 722
XceI RCATGY 1 cut(s) 894
XmiI GTMKAC 1 cut(s) 673
XmnI GAANNNNTTC 3 cut(s) 64, 503, 1080
XspI CTAG 2 cut(s) 110, 737
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.