Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000117.1

Orthogroup ID

OG0018978

Physical Location & Seq

Genomic Coordinates Reverse (-)

151905 .. 152575

Gene Structure 671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

atgccggccgagatgggtgggttggtggatgcagaagaagaggaactcgtgttagatgttggagtgatcggcgacggcgactattggagaaatgaagatttgtatcttaaaatttcaagatttggcaatgatctcataattgattcctcaacaaaatctgtccatagagaaaaggcttccccagatcgtagttcaactgctgattcatcattggttgctgatggaaagtcgggaattacttacagcaatggtgataatgaaattgaatctgttttcacccacgacgaagatgaacatgcaagaagtcccaatgacagtctagttggaaagactgctgtagacagcccgtctcgagagttcttgcttcatgttattacttccaacaaggaccgaaatgtctatgaattgaggtacttcaacatagctgagaatgaagcagaggaggaagattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000147 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005938 GO:0006810 GO:0006886 GO:0006897 GO:0006996 GO:0007010 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015629 GO:0015833 GO:0016043 GO:0016192 GO:0022607 GO:0030029 GO:0030036 GO:0030479 GO:0030863 GO:0030864 GO:0030865 GO:0030866 GO:0033036 GO:0034613 GO:0042886 GO:0043167 GO:0043169 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044396 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045184 GO:0046872 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061645 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098657 GO:0099568

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

EF-hand_4 EF-hand_5

Protein Analysis

150

Amino Acids

16.67

Weight (kDa)

4.31

Isoelectric Point (pI)

57.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018978)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0169461 RchiOBHm_Chr7g0209401
rosa_multiflora	Rmu_sc0000117.1_g000028 Rmu_sc0000813.1_g000013
rosa_roxburghii	Rroxscaffold_2G00141080 Rroxscaffold_3G00274460 Rroxscaffold_5G00364860
rosa_samantha	Rh1DG134900 Rh4AG185100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	395
AccI	GTMKAC	1 cut(s)	339
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	1 cut(s)	111
AfaI	GTAC	1 cut(s)	413
AgsI	TTSAA	4 cut(s)	117, 195, 266, 418
AhdI	GACNNNNNGTC	1 cut(s)	346
AluBI	AGCT	1 cut(s)	425
AluI	AGCT	1 cut(s)	425
Alw26I	GTCTC	1 cut(s)	354
Ama87I	CYCGRG	1 cut(s)	351
AoxI	GGCC	1 cut(s)	6
ApoI	RAATTY	1 cut(s)	111
AspS9I	GGNCC	1 cut(s)	388
AsuHPI	GGTGA	2 cut(s)	263, 268
AvaI	CYCGRG	1 cut(s)	351
AvaII	GGWCC	1 cut(s)	388
BauI	CACGAG	1 cut(s)	47
BccI	CCATC	2 cut(s)	7, 215
BceAI	ACGGC	1 cut(s)	91
BcoDI	GTCTC	1 cut(s)	354
BfaI	CTAG	1 cut(s)	320
BfmI	CTRYAG	1 cut(s)	336
Bme18I	GGWCC	1 cut(s)	388
BmeRI	GACNNNNNGTC	1 cut(s)	346
BmeT110I	CYCGRG	1 cut(s)	351
BmgT120I	GGNCC	1 cut(s)	388
BmsI	GCATC	1 cut(s)	19
BsaBI	GATNNNNATC	1 cut(s)	102
Bse118I	RCCGGY	1 cut(s)	4
Bse3DI	GCAATG	2 cut(s)	133, 253
Bse8I	GATNNNNATC	1 cut(s)	102
BseGI	GGATG	1 cut(s)	34
BseJI	GATNNNNATC	1 cut(s)	102
BseMI	GCAATG	2 cut(s)	133, 253
BseMII	CTCAG	1 cut(s)	417
BseX3I	CGGCCG	1 cut(s)	6
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	1 cut(s)	8
BsiEI	CGRYCG	1 cut(s)	9
BsiHKCI	CYCGRG	1 cut(s)	351
BsiSI	CCGG	1 cut(s)	5
BslFI	GGGAC	1 cut(s)	291
BsmAI	GTCTC	1 cut(s)	354
BsmBI	CGTCTC	1 cut(s)	354
BsmFI	GGGAC	1 cut(s)	291
BsnI	GGCC	1 cut(s)	8
BsoBI	CYCGRG	1 cut(s)	351
Bsp143I	GATC	3 cut(s)	66, 130, 184
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	1 cut(s)	418
BsrDI	GCAATG	2 cut(s)	133, 253
BsrFI	RCCGGY	1 cut(s)	4
BssAI	RCCGGY	1 cut(s)	4
BssMI	GATC	3 cut(s)	66, 130, 184
BssSI	CACGAG	1 cut(s)	47
Bst2BI	CACGAG	1 cut(s)	47
Bst4CI	ACNGT	1 cut(s)	317
Bst6I	CTCTTC	1 cut(s)	33
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	1 cut(s)	426
BstF5I	GGATG	1 cut(s)	34
BstKTI	GATC	3 cut(s)	69, 133, 187
BstMAI	GTCTC	1 cut(s)	354
BstMBI	GATC	3 cut(s)	66, 130, 184
BstMCI	CGRYCG	1 cut(s)	9
BstNSI	RCATGY	1 cut(s)	299
BstSFI	CTRYAG	1 cut(s)	336
BstZI	CGGCCG	1 cut(s)	6
BsuRI	GGCC	1 cut(s)	8
BtsCI	GGATG	1 cut(s)	34
Cac8I	GCNNGC	1 cut(s)	6
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	1 cut(s)	388
Csp6I	GTAC	1 cut(s)	412
CviAII	CATG	2 cut(s)	296, 368
CviJI	RGCY	4 cut(s)	8, 176, 345, 425
CviKI_1	RGCY	4 cut(s)	8, 176, 345, 425
CviQI	GTAC	1 cut(s)	412
DdeI	CTNAG	1 cut(s)	426
DpnI	GATC	3 cut(s)	68, 132, 186
DpnII	GATC	3 cut(s)	66, 130, 184
DrdI	GACNNNNNNGTC	1 cut(s)	395
DriI	GACNNNNNGTC	1 cut(s)	346
DseDI	GACNNNNNNGTC	1 cut(s)	395
EaeI	YGGCCR	1 cut(s)	6
EagI	CGGCCG	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	33
Eam1105I	GACNNNNNGTC	1 cut(s)	346
EarI	CTCTTC	1 cut(s)	33
EclXI	CGGCCG	1 cut(s)	6
Eco47I	GGWCC	1 cut(s)	388
Eco52I	CGGCCG	1 cut(s)	6
Eco88I	CYCGRG	1 cut(s)	351
Esp3I	CGTCTC	1 cut(s)	354
FaeI	CATG	2 cut(s)	299, 371
FaiI	YATR	6 cut(s)	137, 165, 297, 369, 402, 422
FaqI	GGGAC	1 cut(s)	291
FatI	CATG	2 cut(s)	295, 367
FblI	GTMKAC	1 cut(s)	339
FokI	GGATG	1 cut(s)	41
FspBI	CTAG	1 cut(s)	320
HaeIII	GGCC	1 cut(s)	8
HapII	CCGG	1 cut(s)	5
Hin1II	CATG	2 cut(s)	299, 371
HinfI	GANTC	3 cut(s)	143, 203, 266
HpaII	CCGG	1 cut(s)	5
HphI	GGTGA	2 cut(s)	263, 268
Hpy166II	GTNNAC	1 cut(s)	340
Hpy188III	TCNNGA	4 cut(s)	117, 231, 351, 353
Hpy8I	GTNNAC	1 cut(s)	340
Hpy99I	CGWCG	2 cut(s)	77, 287
HpyCH4III	ACNGT	1 cut(s)	317
HpyCH4V	TGCA	2 cut(s)	32, 299
HpyF3I	CTNAG	1 cut(s)	426
Hsp92II	CATG	2 cut(s)	299, 371
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
Kzo9I	GATC	3 cut(s)	66, 130, 184
LpnPI	CCDG	2 cut(s)	18, 195
LweI	GCATC	1 cut(s)	19
MaeI	CTAG	1 cut(s)	320
MalI	GATC	3 cut(s)	68, 132, 186
MboI	GATC	3 cut(s)	66, 130, 184
MboII	GAAGA	4 cut(s)	47, 50, 107, 299
MluCI	AATT	5 cut(s)	111, 138, 234, 261, 404
MmeI	TCCRAC	3 cut(s)	40, 304, 405
MnlI	CCTC	5 cut(s)	34, 157, 402, 433, 436
MroNI	GCCGGC	1 cut(s)	4
MseI	TTAA	1 cut(s)	108
MspI	CCGG	1 cut(s)	5
NaeI	GCCGGC	1 cut(s)	6
NdeII	GATC	3 cut(s)	66, 130, 184
NgoMIV	GCCGGC	1 cut(s)	4
NlaIII	CATG	2 cut(s)	299, 371
NmeAIII	GCCGAG	1 cut(s)	34
NspI	RCATGY	1 cut(s)	299
PaeR7I	CTCGAG	1 cut(s)	351
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PdiI	GCCGGC	1 cut(s)	6
PfeI	GAWTC	3 cut(s)	143, 203, 266
PspPI	GGNCC	1 cut(s)	388
RsaI	GTAC	1 cut(s)	413
RsaNI	GTAC	1 cut(s)	412
SaqAI	TTAA	1 cut(s)	108
Sau3AI	GATC	3 cut(s)	66, 130, 184
Sau96I	GGNCC	1 cut(s)	388
SetI	ASST	2 cut(s)	413, 427
SfaNI	GCATC	1 cut(s)	19
SfcI	CTRYAG	1 cut(s)	336
Sfr274I	CTCGAG	1 cut(s)	351
SinI	GGWCC	1 cut(s)	388
SlaI	CTCGAG	1 cut(s)	351
SmlI	CTYRAG	1 cut(s)	351
SmoI	CTYRAG	1 cut(s)	351
Sse9I	AATT	5 cut(s)	111, 138, 234, 261, 404
SspMI	CTAG	1 cut(s)	320
TaaI	ACNGT	1 cut(s)	317
TaqI	TCGA	1 cut(s)	352
TaqII	GACCGA	1 cut(s)	405
TasI	AATT	5 cut(s)	111, 138, 234, 261, 404
TfiI	GAWTC	3 cut(s)	143, 203, 266
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TspDTI	ATGAA	7 cut(s)	108, 195, 273, 306, 356, 417, 447
VpaK11BI	GGWCC	1 cut(s)	388
XapI	RAATTY	1 cut(s)	111
XceI	RCATGY	1 cut(s)	299
XhoI	CTCGAG	1 cut(s)	351
XmiI	GTMKAC	1 cut(s)	339
XspI	CTAG	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.