Rmu_sc0000167.1_g000006

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000167.1
OG0017777
Physical Location & Seq
Forward (+)
41850 .. 43187
1338 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000167.1_g000006.1.cds

Sequence Viewer

Length: 1338 bp
atgccacctgcaaaccaacagcgtccaccacctccccttcatttccatttccaacagggctctctggcaccaccggcaccgccaaatgtagttcagcaggctataggtcagcagggtccttatttatatcagacacctatgccacctgcaaaccaacaacgtccaccacctccccttcatttccatttccaacagggctctctggcaccaccggcaccgccaaatgtagttcagcaggctataggtcagcagggtccttatttatatcagacacctatgccacctgcaaaccaacaacgtccaccacctccccttcatttccatttccaacagggctctctggcaccaccggcaccgccaaatgtagttcagcaggctataggtcagcagggtccttatttatatcagacacctatgccacctgcaaaccaacaacgtccaccacctccccttcatttccatttccaacagggctctctggcaccaccggcaccgccaaatgtagttcagcaggctataggtcagcagggtccttatttatatcagacacctatgccacctgcaaaccaacaacgtccaccacctccccttcatttccatttccaacagggctctcgggcagcaccagtaccaccaaatgtagttcagcaggctatatatgcaatcccacctccgataggtcagcagggtcgttatttatatcagcacggttttgttgccccacctctccctactcaccaaagttcatctgtcccgttcagtgggatgccaaatacagggcaatcttatggacaccccactccaccagtccatggaagcacatggcataacatgcaacattcttcaacagcaggaaactggaatttccaacggattcatccaccagcacttgtgactccgcatgctcctccctacccatacatgtcaaaggctgcagtaccacatggagcattacccccttcaaataatactacttctggttgtgctgcacaaggaccaacatggtgtagagctttgtatccagcacaaccacaggctggtcttcagcataatccaccaccccctcctgcctctattattgtcaatcccacttcatttggaacttctggacatttaacagccggcgcttctgaaatggcttccttggctctcctaccagcagcaaatcctcaatcaccctttgcgccattgcccaccgctccttcaccttcaacttcattgccaaagcttgatgctgtcagttttcctagtcatccccacattgatcgtaggtctaataaacttctgttgactgaaacgaggcctctaaatgcttctgacatggagattgaaggttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Surp

Protein Analysis

445

Amino Acids

47.77

Weight (kDa)

9.63

Isoelectric Point (pI)

74.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017777)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0330581
rosa_multiflora Rmu_sc0000167.1_g000006 Rmu_sc0000815.1_g000001
rosa_roxburghii Rroxscaffold_4G00319740
rosa_rugosa Rorug01G0089400 Rorug01G0089500 Rorug01G0089600
rosa_samantha Rh1AG107700 Rh1CG103500 Rh1DG113100
rosa_wichuraiana Rw0G004380 Rw1G008920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 5 cut(s) 16, 154, 292, 430, 568
Acc36I ACCTGC 5 cut(s) 16, 154, 292, 430, 568
AccB1I GGYRCC 8 cut(s) 67, 76, 205, 214, 343, 352, 481, 490
AccB7I CCANNNNNTGG 2 cut(s) 812, 1037
AccBSI CCGCTC 1 cut(s) 1199
AciI CCGC 6 cut(s) 80, 218, 356, 494, 899, 1197
AcsI RAATTY 1 cut(s) 862
AcuI CTGAAG 1 cut(s) 1028
AfaI GTAC 2 cut(s) 630, 939
AfiI CCNNNNNNNGG 5 cut(s) 677, 761, 776, 812, 1037
AflIII ACRYGT 1 cut(s) 921
AgsI TTSAA 4 cut(s) 846, 963, 1212, 1331
AluBI AGCT 2 cut(s) 1013, 1228
AluI AGCT 2 cut(s) 1013, 1228
Ama87I CYCGRG 1 cut(s) 615
AoxI GGCC 1 cut(s) 1301
ApeKI GCWGC 4 cut(s) 620, 932, 986, 1160
ApoI RAATTY 1 cut(s) 862
AspLEI GCGC 2 cut(s) 1127, 1186
AspS9I GGNCC 5 cut(s) 116, 254, 392, 530, 995
AsuHPI GGTGA 3 cut(s) 728, 1167, 1197
AvaI CYCGRG 1 cut(s) 615
AvaII GGWCC 5 cut(s) 116, 254, 392, 530, 995
BanI GGYRCC 8 cut(s) 67, 76, 205, 214, 343, 352, 481, 490
BanII GRGCYC 5 cut(s) 62, 200, 338, 476, 614
BbsI GAAGAC 1 cut(s) 1034
BbvI GCAGC 4 cut(s) 632, 919, 973, 1172
BciVI GTATCC 1 cut(s) 1029
BfaI CTAG 1 cut(s) 1248
BfmI CTRYAG 5 cut(s) 102, 240, 378, 516, 933
BfoI RGCGCY 1 cut(s) 1128
BfuAI ACCTGC 5 cut(s) 16, 154, 292, 430, 568
BfuI GTATCC 1 cut(s) 1029
BisI GCNGC 4 cut(s) 621, 933, 987, 1161
BlsI GCNGC 4 cut(s) 622, 934, 988, 1162
Bme18I GGWCC 5 cut(s) 116, 254, 392, 530, 995
BmeT110I CYCGRG 1 cut(s) 615
BmgT120I GGNCC 5 cut(s) 116, 254, 392, 530, 995
BmsI GCATC 2 cut(s) 756, 1222
BpiI GAAGAC 1 cut(s) 1034
BsaJI CCNNGG 2 cut(s) 811, 1143
Bsc4I CCNNNNNNNGG 5 cut(s) 677, 761, 776, 812, 1037
Bse118I RCCGGY 5 cut(s) 73, 211, 349, 487, 1121
Bse1I ACTGG 3 cut(s) 626, 806, 863
Bse3DI GCAATG 2 cut(s) 1187, 1217
BseDI CCNNGG 2 cut(s) 811, 1143
BseGI GGATG 3 cut(s) 771, 877, 1252
BseLI CCNNNNNNNGG 5 cut(s) 677, 761, 776, 812, 1037
BseMI GCAATG 2 cut(s) 1187, 1217
BseNI ACTGG 3 cut(s) 626, 806, 863
BseRI GAGGAG 1 cut(s) 897
BseXI GCAGC 4 cut(s) 632, 919, 973, 1172
BsgI GTGCAG 1 cut(s) 972
BshFI GGCC 1 cut(s) 1303
BshNI GGYRCC 8 cut(s) 67, 76, 205, 214, 343, 352, 481, 490
BsiHKCI CYCGRG 1 cut(s) 615
BsiSI CCGG 5 cut(s) 74, 212, 350, 488, 1122
BslFI GGGAC 1 cut(s) 737
BslI CCNNNNNNNGG 5 cut(s) 677, 761, 776, 812, 1037
BsmFI GGGAC 1 cut(s) 737
BsnI GGCC 1 cut(s) 1303
BsoBI CYCGRG 1 cut(s) 615
Bsp1286I GDGCHC 5 cut(s) 62, 200, 338, 476, 614
Bsp143I GATC 1 cut(s) 1264
Bsp19I CCATGG 1 cut(s) 811
BspACI CCGC 6 cut(s) 80, 218, 356, 494, 899, 1197
BspANI GGCC 1 cut(s) 1303
BspMAI CTGCAG 1 cut(s) 937
BspMI ACCTGC 5 cut(s) 16, 154, 292, 430, 568
BspT107I GGYRCC 8 cut(s) 67, 76, 205, 214, 343, 352, 481, 490
BsrBI CCGCTC 1 cut(s) 1199
BsrDI GCAATG 2 cut(s) 1187, 1217
BsrFI RCCGGY 5 cut(s) 73, 211, 349, 487, 1121
BsrI ACTGG 3 cut(s) 626, 806, 863
BssAI RCCGGY 5 cut(s) 73, 211, 349, 487, 1121
BssECI CCNNGG 2 cut(s) 811, 1143
BssMI GATC 1 cut(s) 1264
BssT1I CCWWGG 2 cut(s) 811, 1143
Bst4CI ACNGT 1 cut(s) 710
BstAPI GCANNNNNTGC 1 cut(s) 832
BstC8I GCNNGC 7 cut(s) 99, 237, 375, 513, 651, 903, 1123
BstDSI CCRYGG 1 cut(s) 811
BstENI CCTNNNNNAGG 1 cut(s) 675
BstF5I GGATG 3 cut(s) 771, 877, 1252
BstH2I RGCGCY 1 cut(s) 1128
BstHHI GCGC 2 cut(s) 1127, 1186
BstKTI GATC 1 cut(s) 1267
BstMBI GATC 1 cut(s) 1264
BstMWI GCNNNNNNNGC 7 cut(s) 74, 212, 350, 488, 659, 832, 1145
BstNSI RCATGY 3 cut(s) 835, 905, 925
BstSFI CTRYAG 5 cut(s) 102, 240, 378, 516, 933
BstV1I GCAGC 4 cut(s) 632, 919, 973, 1172
BstV2I GAAGAC 1 cut(s) 1034
BsuI GTATCC 1 cut(s) 1029
BsuRI GGCC 1 cut(s) 1303
BtgI CCRYGG 1 cut(s) 811
BtsCI GGATG 3 cut(s) 771, 877, 1252
BtsIMutI CAGTG 1 cut(s) 766
BveI ACCTGC 5 cut(s) 16, 154, 292, 430, 568
Cac8I GCNNGC 7 cut(s) 99, 237, 375, 513, 651, 903, 1123
CfoI GCGC 2 cut(s) 1127, 1186
Cfr10I RCCGGY 5 cut(s) 73, 211, 349, 487, 1121
Cfr13I GGNCC 5 cut(s) 116, 254, 392, 530, 995
CseI GACGC 1 cut(s) 11
Csp6I GTAC 2 cut(s) 629, 938
CspCI CAANNNNNGTGG 2 cut(s) 1078, 1113
CviAII CATG 8 cut(s) 812, 822, 832, 902, 922, 944, 1002, 1321
CviQI GTAC 2 cut(s) 629, 938
DpnI GATC 1 cut(s) 1266
DpnII GATC 1 cut(s) 1264
Eco130I CCWWGG 2 cut(s) 811, 1143
Eco147I AGGCCT 1 cut(s) 1303
Eco24I GRGCYC 5 cut(s) 62, 200, 338, 476, 614
Eco47I GGWCC 5 cut(s) 116, 254, 392, 530, 995
Eco57I CTGAAG 1 cut(s) 1028
Eco88I CYCGRG 1 cut(s) 615
EcoNI CCTNNNNNAGG 1 cut(s) 675
EcoO109I RGGNCCY 4 cut(s) 116, 254, 392, 530
EcoT14I CCWWGG 2 cut(s) 811, 1143
EcoT38I GRGCYC 5 cut(s) 62, 200, 338, 476, 614
ErhI CCWWGG 2 cut(s) 811, 1143
FaeI CATG 8 cut(s) 815, 825, 835, 905, 925, 947, 1005, 1324
FaqI GGGAC 1 cut(s) 737
FatI CATG 8 cut(s) 811, 821, 831, 901, 921, 943, 1001, 1320
Fnu4HI GCNGC 4 cut(s) 621, 933, 987, 1161
FokI GGATG 3 cut(s) 778, 864, 1239
FriOI GRGCYC 5 cut(s) 62, 200, 338, 476, 614
Fsp4HI GCNGC 4 cut(s) 621, 933, 987, 1161
FspBI CTAG 1 cut(s) 1248
GlaI GCGC 2 cut(s) 1126, 1185
GluI GCNGC 4 cut(s) 621, 933, 987, 1161
HaeII RGCGCY 1 cut(s) 1128
HaeIII GGCC 1 cut(s) 1303
HapII CCGG 5 cut(s) 74, 212, 350, 488, 1122
HgaI GACGC 1 cut(s) 11
HhaI GCGC 2 cut(s) 1127, 1186
Hin1II CATG 8 cut(s) 815, 825, 835, 905, 925, 947, 1005, 1324
Hin6I GCGC 2 cut(s) 1125, 1184
HinP1I GCGC 2 cut(s) 1125, 1184
HincII GTYRAC 1 cut(s) 1290
HindII GTYRAC 1 cut(s) 1290
HindIII AAGCTT 1 cut(s) 1226
HinfI GANTC 2 cut(s) 874, 895
HpaII CCGG 5 cut(s) 74, 212, 350, 488, 1122
HphI GGTGA 3 cut(s) 728, 1167, 1197
Hpy166II GTNNAC 6 cut(s) 26, 164, 302, 440, 578, 1290
Hpy188I TCNGA 7 cut(s) 132, 270, 408, 546, 675, 1132, 1318
Hpy188III TCNNGA 1 cut(s) 1107
Hpy8I GTNNAC 6 cut(s) 26, 164, 302, 440, 578, 1290
HpyAV CCTTC 9 cut(s) 47, 185, 323, 461, 599, 969, 1212, 1218, 1325
HpyCH4III ACNGT 1 cut(s) 710
HpyCH4IV ACGT 4 cut(s) 160, 298, 436, 574
HpyCH4V TGCA 9 cut(s) 11, 149, 287, 425, 563, 662, 835, 935, 989
HpyF10VI GCNNNNNNNGC 7 cut(s) 74, 212, 350, 488, 659, 832, 1145
HpySE526I ACGT 4 cut(s) 160, 298, 436, 574
Hsp92II CATG 8 cut(s) 815, 825, 835, 905, 925, 947, 1005, 1324
HspAI GCGC 2 cut(s) 1125, 1184
KroI GCCGGC 1 cut(s) 1121
KroNI GCCGGC 1 cut(s) 1123
Kzo9I GATC 1 cut(s) 1264
LmnI GCTCC 3 cut(s) 910, 947, 1204
Lsp1109I GCAGC 4 cut(s) 632, 919, 973, 1172
LweI GCATC 2 cut(s) 756, 1222
MaeI CTAG 1 cut(s) 1248
MaeII ACGT 4 cut(s) 160, 298, 436, 574
MaeIII GTNAC 1 cut(s) 892
MalI GATC 1 cut(s) 1266
MbiI CCGCTC 1 cut(s) 1199
MboI GATC 1 cut(s) 1264
MboII GAAGA 2 cut(s) 834, 1034
MhlI GDGCHC 5 cut(s) 62, 200, 338, 476, 614
MluCI AATT 1 cut(s) 862
MlyI GAGTC 1 cut(s) 889
MmeI TCCRAC 6 cut(s) 76, 214, 352, 490, 628, 892
MroNI GCCGGC 1 cut(s) 1121
MseI TTAA 1 cut(s) 1115
MspI CCGG 5 cut(s) 74, 212, 350, 488, 1122
MwoI GCNNNNNNNGC 7 cut(s) 74, 212, 350, 488, 659, 832, 1145
NaeI GCCGGC 1 cut(s) 1123
NcoI CCATGG 1 cut(s) 811
NdeII GATC 1 cut(s) 1264
NgoMIV GCCGGC 1 cut(s) 1121
NlaIII CATG 8 cut(s) 815, 825, 835, 905, 925, 947, 1005, 1324
NmuCI GTSAC 1 cut(s) 892
NspI RCATGY 3 cut(s) 835, 905, 925
PaeI GCATGC 1 cut(s) 905
PaqCI CACCTGC 5 cut(s) 16, 154, 292, 430, 568
PceI AGGCCT 1 cut(s) 1303
PciI ACATGT 1 cut(s) 921
PdiI GCCGGC 1 cut(s) 1123
PfeI GAWTC 1 cut(s) 874
PflMI CCANNNNNTGG 2 cut(s) 812, 1037
PkrI GCNGC 4 cut(s) 622, 934, 988, 1162
PleI GAGTC 1 cut(s) 889
PpsI GAGTC 1 cut(s) 889
PpuMI RGGWCCY 4 cut(s) 116, 254, 392, 530
PscI ACATGT 1 cut(s) 921
Psp5II RGGWCCY 4 cut(s) 116, 254, 392, 530
PspPI GGNCC 5 cut(s) 116, 254, 392, 530, 995
PspPPI RGGWCCY 4 cut(s) 116, 254, 392, 530
PstI CTGCAG 1 cut(s) 937
RsaI GTAC 2 cut(s) 630, 939
RsaNI GTAC 2 cut(s) 629, 938
SaqAI TTAA 1 cut(s) 1115
SatI GCNGC 4 cut(s) 621, 933, 987, 1161
Sau3AI GATC 1 cut(s) 1264
Sau96I GGNCC 5 cut(s) 116, 254, 392, 530, 995
SchI GAGTC 1 cut(s) 889
SduI GDGCHC 5 cut(s) 62, 200, 338, 476, 614
SfaNI GCATC 2 cut(s) 756, 1222
SfcI CTRYAG 5 cut(s) 102, 240, 378, 516, 933
SinI GGWCC 5 cut(s) 116, 254, 392, 530, 995
SphI GCATGC 1 cut(s) 905
Sse9I AATT 1 cut(s) 862
SseBI AGGCCT 1 cut(s) 1303
SsiI CCGC 6 cut(s) 80, 218, 356, 494, 899, 1197
SspMI CTAG 1 cut(s) 1248
StuI AGGCCT 1 cut(s) 1303
StyI CCWWGG 2 cut(s) 811, 1143
TaaI ACNGT 1 cut(s) 710
TaiI ACGT 4 cut(s) 163, 301, 439, 577
TasI AATT 1 cut(s) 862
TfiI GAWTC 1 cut(s) 874
Tru1I TTAA 1 cut(s) 1115
Tru9I TTAA 1 cut(s) 1115
TscAI CASTG 1 cut(s) 766
TseFI GTSAC 1 cut(s) 892
TseI GCWGC 4 cut(s) 620, 932, 986, 1160
Tsp45I GTSAC 1 cut(s) 892
TspDTI ATGAA 9 cut(s) 29, 167, 305, 443, 581, 735, 866, 1083, 1206
TspGWI ACGGA 1 cut(s) 886
TspRI CASTG 1 cut(s) 766
Van91I CCANNNNNTGG 2 cut(s) 812, 1037
VpaK11BI GGWCC 5 cut(s) 116, 254, 392, 530, 995
XagI CCTNNNNNAGG 1 cut(s) 675
XapI RAATTY 1 cut(s) 862
XceI RCATGY 3 cut(s) 835, 905, 925
XspI CTAG 1 cut(s) 1248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.