Rroxscaffold_4G00319740

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0017777
Physical Location & Seq
Forward (+)
47903644 .. 47916081
12438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00319740.1

Sequence Viewer

Length: 1362 bp
ATGCCACCTGCGAACCAACAGCGTCCACCACCTCCCCTTCATTTCCATTTCCAACAGGGCTCTCTGGCACCACCGGCACCGCCAAATGTAGTTCAGCAGGCTATAGGTCAGCAGGGTCCTTATTTATATCAGACACCTATGCCACCTGCAAACCAACAACGTCCACCACCTCCCCTTCATTTCCATTTCCAACAGGGCTCTCCGGCAGCACCAGTACCACCAAATGTAGTTCAGCAGGCTATATATGCAGTCCCACCTCCGATAGGTCAGCAGGGTCGTTATTTTTATCAGCACGGTTTTGTTGCCCCACCTCTCCCTACTCACCAAAGTTCATCTGTTCCGTTCAGTGGGATGCCAAATACAGGGCAATCTTATGGACACCCCACTCCACCAGTCCATGGAAACACATGGCATAACATGCAACATTCTTCAACAGCAGGAAACTGGAATTTCCAACGGATTCATCCACCAGCACTTGTGACTCCACATGCTTCTCCCTACCCATACATGTCAAAGGCTGCAGTACCACATGGAGCATTACCCCCTTCAAATAATACTACTTCTGGTTGTGCTGCACAAGGACCAACATGGTGTAGAGCTTTGTATCCAGCACAACCACAGGCTGGTCTTCAGCATAATCCACCACCCCCTCCCGCCTCTATTATTGTCAATCCCACTTCATTTGGAACTTCTGGACATTTAACAGCCGGCGCTTCTCAAATGGCTTCCCTGGCTCTCCTACCAGCAGCAAATCCTCAATCACCCTTTGCGCCATTGCCCACCGCTCCTTCAACTTCAACTTCATTGCCAAAGCTTGATGCTTTCAGTTTTCCTAGTCATCCCCACATTGATCGTAGGTCTAATAAACTTCTGTTGACTGAAATGAGGCCTCTAAATGCTTCTGACATGGAGATTGAAGATCCTCTTATAAGAATTTTCAGTGCCGATCGTGGTCTCTTAATTGAAATAACAAATTCAAAGTGTCCTCAATCACATGAGGAGCTGAGTCTTTCACAAAATAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGGGTGTACAACCTCTGAGACAAATGATACAAATAGTGAAATTCCCTCCCTACAGCCTCAACTTGTACGACTCTCAGATCAACAAGCACTGCAACCGGTTAGAGAGAAAATTACTACAACAGAAATATGTTGCCAGTCACATGTGGAGCTGAGTCTTTCACAAAGTAGTAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAGAAAAGGTGTAAAACCCCCGAGACAAATATTAAAAGTTGTGAAAGTCCCTCTATACCGCCTCAACTTGTACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Surp

Protein Analysis

453

Amino Acids

49.72

Weight (kDa)

10.19

Isoelectric Point (pI)

67.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017777)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0330581
rosa_multiflora Rmu_sc0000167.1_g000006 Rmu_sc0000815.1_g000001
rosa_roxburghii Rroxscaffold_4G00319740
rosa_rugosa Rorug01G0089400 Rorug01G0089500 Rorug01G0089600
rosa_samantha Rh1AG107700 Rh1CG103500 Rh1DG113100
rosa_wichuraiana Rw0G004380 Rw1G008920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 929
AarI CACCTGC 2 cut(s) 16, 154
Acc36I ACCTGC 2 cut(s) 16, 154
AccB1I GGYRCC 2 cut(s) 67, 76
AccB7I CCANNNNNTGG 2 cut(s) 398, 623
AccBSI CCGCTC 1 cut(s) 785
AciI CCGC 4 cut(s) 80, 654, 783, 1342
AclWI GGATC 1 cut(s) 914
AcsI RAATTY 4 cut(s) 448, 933, 973, 1119
AcuI CTGAAG 1 cut(s) 614
AfaI GTAC 5 cut(s) 216, 525, 1087, 1146, 1355
AfiI CCNNNNNNNGG 5 cut(s) 263, 347, 362, 398, 623
AflIII ACRYGT 2 cut(s) 507, 1219
AgeI ACCGGT 1 cut(s) 1174
AgsI TTSAA 7 cut(s) 432, 549, 792, 798, 917, 965, 978
AjnI CCWGG 1 cut(s) 729
AluBI AGCT 4 cut(s) 599, 814, 1003, 1228
AluI AGCT 4 cut(s) 599, 814, 1003, 1228
Alw26I GTCTC 3 cut(s) 959, 1091, 1300
AlwI GGATC 1 cut(s) 914
Ama87I CYCGRG 1 cut(s) 1303
AoxI GGCC 1 cut(s) 887
ApeKI GCWGC 4 cut(s) 206, 518, 572, 746
ApoI RAATTY 4 cut(s) 448, 933, 973, 1119
AsiGI ACCGGT 1 cut(s) 1174
AspLEI GCGC 2 cut(s) 713, 772
AspS9I GGNCC 2 cut(s) 116, 581
AsuHPI GGTGA 2 cut(s) 314, 753
AvaI CYCGRG 1 cut(s) 1303
AvaII GGWCC 2 cut(s) 116, 581
BanI GGYRCC 2 cut(s) 67, 76
BanII GRGCYC 2 cut(s) 62, 200
BbsI GAAGAC 1 cut(s) 620
BbvI GCAGC 4 cut(s) 218, 505, 559, 758
BciT130I CCWGG 1 cut(s) 731
BciVI GTATCC 1 cut(s) 615
BcoDI GTCTC 3 cut(s) 959, 1091, 1300
BfaI CTAG 1 cut(s) 834
BfmI CTRYAG 3 cut(s) 102, 519, 1130
BfoI RGCGCY 1 cut(s) 714
BfuAI ACCTGC 2 cut(s) 16, 154
BfuI GTATCC 1 cut(s) 615
BisI GCNGC 4 cut(s) 207, 519, 573, 747
BlsI GCNGC 4 cut(s) 208, 520, 574, 748
Bme1390I CCNGG 1 cut(s) 731
Bme18I GGWCC 2 cut(s) 116, 581
BmeT110I CYCGRG 1 cut(s) 1303
BmgT120I GGNCC 2 cut(s) 116, 581
BmiI GGNNCC 3 cut(s) 69, 78, 117
BmrFI CCNGG 1 cut(s) 731
BmsI GCATC 2 cut(s) 342, 808
BpiI GAAGAC 1 cut(s) 620
BsaI GGTCTC 1 cut(s) 959
BsaJI CCNNGG 2 cut(s) 397, 729
BsaWI WCCGGW 1 cut(s) 1174
Bsc4I CCNNNNNNNGG 5 cut(s) 263, 347, 362, 398, 623
Bse118I RCCGGY 3 cut(s) 73, 707, 1174
Bse1I ACTGG 4 cut(s) 212, 392, 449, 1213
Bse3DI GCAATG 2 cut(s) 773, 803
BseBI CCWGG 1 cut(s) 731
BseDI CCNNGG 2 cut(s) 397, 729
BseGI GGATG 3 cut(s) 357, 463, 838
BseLI CCNNNNNNNGG 5 cut(s) 263, 347, 362, 398, 623
BseMI GCAATG 2 cut(s) 773, 803
BseMII CTCAG 4 cut(s) 995, 1086, 1167, 1220
BseNI ACTGG 4 cut(s) 212, 392, 449, 1213
BseRI GAGGAG 1 cut(s) 1013
BseXI GCAGC 4 cut(s) 218, 505, 559, 758
BsgI GTGCAG 1 cut(s) 558
Bsh1285I CGRYCG 1 cut(s) 949
BshFI GGCC 1 cut(s) 889
BshNI GGYRCC 2 cut(s) 67, 76
BshTI ACCGGT 1 cut(s) 1174
BsiEI CGRYCG 1 cut(s) 949
BsiHKCI CYCGRG 1 cut(s) 1303
BsiSI CCGG 4 cut(s) 74, 203, 708, 1175
BslFI GGGAC 2 cut(s) 236, 1316
BslI CCNNNNNNNGG 5 cut(s) 263, 347, 362, 398, 623
BsmAI GTCTC 3 cut(s) 959, 1091, 1300
BsmFI GGGAC 2 cut(s) 236, 1316
BsnI GGCC 1 cut(s) 889
Bso31I GGTCTC 1 cut(s) 959
BsoBI CYCGRG 1 cut(s) 1303
Bsp1286I GDGCHC 2 cut(s) 62, 200
Bsp1407I TGTACA 2 cut(s) 1085, 1353
Bsp143I GATC 4 cut(s) 850, 919, 946, 1156
Bsp19I CCATGG 1 cut(s) 397
BspACI CCGC 4 cut(s) 80, 654, 783, 1342
BspANI GGCC 1 cut(s) 889
BspCNI CTCAG 4 cut(s) 996, 1087, 1166, 1221
BspLI GGNNCC 3 cut(s) 69, 78, 117
BspMAI CTGCAG 1 cut(s) 523
BspMI ACCTGC 2 cut(s) 16, 154
BspPI GGATC 1 cut(s) 914
BspT107I GGYRCC 2 cut(s) 67, 76
BspTNI GGTCTC 1 cut(s) 959
BsrBI CCGCTC 1 cut(s) 785
BsrDI GCAATG 2 cut(s) 773, 803
BsrFI RCCGGY 3 cut(s) 73, 707, 1174
BsrGI TGTACA 2 cut(s) 1085, 1353
BsrI ACTGG 4 cut(s) 212, 392, 449, 1213
BssAI RCCGGY 3 cut(s) 73, 707, 1174
BssECI CCNNGG 2 cut(s) 397, 729
BssMI GATC 4 cut(s) 850, 919, 946, 1156
BssT1I CCWWGG 1 cut(s) 397
Bst2UI CCWGG 1 cut(s) 731
Bst4CI ACNGT 1 cut(s) 296
BstAPI GCANNNNNTGC 1 cut(s) 418
BstAUI TGTACA 2 cut(s) 1085, 1353
BstC8I GCNNGC 3 cut(s) 99, 237, 709
BstDEI CTNAG 4 cut(s) 1004, 1095, 1153, 1229
BstDSI CCRYGG 1 cut(s) 397
BstENI CCTNNNNNAGG 1 cut(s) 261
BstF5I GGATG 3 cut(s) 357, 463, 838
BstH2I RGCGCY 1 cut(s) 714
BstHHI GCGC 2 cut(s) 713, 772
BstKTI GATC 4 cut(s) 853, 922, 949, 1159
BstMAI GTCTC 3 cut(s) 959, 1091, 1300
BstMBI GATC 4 cut(s) 850, 919, 946, 1156
BstMCI CGRYCG 1 cut(s) 949
BstMWI GCNNNNNNNGC 4 cut(s) 74, 245, 418, 731
BstNI CCWGG 1 cut(s) 731
BstNSI RCATGY 4 cut(s) 421, 491, 511, 1223
BstSCI CCNGG 1 cut(s) 729
BstSFI CTRYAG 3 cut(s) 102, 519, 1130
BstV1I GCAGC 4 cut(s) 218, 505, 559, 758
BstV2I GAAGAC 1 cut(s) 620
BstX2I RGATCY 1 cut(s) 919
BstYI RGATCY 1 cut(s) 919
BsuI GTATCC 1 cut(s) 615
BsuRI GGCC 1 cut(s) 889
BtgI CCRYGG 1 cut(s) 397
BtsCI GGATG 3 cut(s) 357, 463, 838
BtsI GCAGTG 1 cut(s) 1166
BtsIMutI CAGTG 3 cut(s) 352, 946, 1166
BveI ACCTGC 2 cut(s) 16, 154
Cac8I GCNNGC 3 cut(s) 99, 237, 709
CfoI GCGC 2 cut(s) 713, 772
Cfr10I RCCGGY 3 cut(s) 73, 707, 1174
Cfr13I GGNCC 2 cut(s) 116, 581
CseI GACGC 1 cut(s) 11
Csp6I GTAC 5 cut(s) 215, 524, 1086, 1145, 1354
CspAI ACCGGT 1 cut(s) 1174
CspCI CAANNNNNGTGG 2 cut(s) 664, 699
CviQI GTAC 5 cut(s) 215, 524, 1086, 1145, 1354
DdeI CTNAG 4 cut(s) 1004, 1095, 1153, 1229
DpnI GATC 4 cut(s) 852, 921, 948, 1158
DpnII GATC 4 cut(s) 850, 919, 946, 1156
Eco130I CCWWGG 1 cut(s) 397
Eco147I AGGCCT 1 cut(s) 889
Eco24I GRGCYC 2 cut(s) 62, 200
Eco31I GGTCTC 1 cut(s) 959
Eco47I GGWCC 2 cut(s) 116, 581
Eco57I CTGAAG 1 cut(s) 614
Eco88I CYCGRG 1 cut(s) 1303
EcoNI CCTNNNNNAGG 1 cut(s) 261
EcoO109I RGGNCCY 1 cut(s) 116
EcoRII CCWGG 1 cut(s) 729
EcoT14I CCWWGG 1 cut(s) 397
EcoT38I GRGCYC 2 cut(s) 62, 200
ErhI CCWWGG 1 cut(s) 397
FalI AAGNNNNNCTT 2 cut(s) 909, 941
FaqI GGGAC 2 cut(s) 236, 1316
FauI CCCGC 1 cut(s) 661
Fnu4HI GCNGC 4 cut(s) 207, 519, 573, 747
FokI GGATG 3 cut(s) 364, 450, 825
FriOI GRGCYC 2 cut(s) 62, 200
Fsp4HI GCNGC 4 cut(s) 207, 519, 573, 747
FspBI CTAG 1 cut(s) 834
GlaI GCGC 2 cut(s) 712, 771
GluI GCNGC 4 cut(s) 207, 519, 573, 747
HaeII RGCGCY 1 cut(s) 714
HaeIII GGCC 1 cut(s) 889
HapII CCGG 4 cut(s) 74, 203, 708, 1175
HgaI GACGC 1 cut(s) 11
HhaI GCGC 2 cut(s) 713, 772
Hin6I GCGC 2 cut(s) 711, 770
HinP1I GCGC 2 cut(s) 711, 770
HincII GTYRAC 1 cut(s) 876
HindII GTYRAC 1 cut(s) 876
HindIII AAGCTT 1 cut(s) 812
HinfI GANTC 5 cut(s) 460, 481, 1006, 1149, 1231
HpaII CCGG 4 cut(s) 74, 203, 708, 1175
HphI GGTGA 2 cut(s) 314, 753
Hpy166II GTNNAC 4 cut(s) 26, 164, 876, 1086
Hpy188I TCNGA 5 cut(s) 132, 261, 904, 1096, 1156
Hpy188III TCNNGA 1 cut(s) 693
Hpy8I GTNNAC 4 cut(s) 26, 164, 876, 1086
HpyAV CCTTC 5 cut(s) 47, 185, 555, 798, 1072
HpyCH4III ACNGT 1 cut(s) 296
HpyCH4IV ACGT 1 cut(s) 160
HpyCH4V TGCA 6 cut(s) 149, 248, 421, 521, 575, 1171
HpyF10VI GCNNNNNNNGC 4 cut(s) 74, 245, 418, 731
HpyF3I CTNAG 4 cut(s) 1004, 1095, 1153, 1229
HpySE526I ACGT 1 cut(s) 160
HspAI GCGC 2 cut(s) 711, 770
KroI GCCGGC 1 cut(s) 707
KroNI GCCGGC 1 cut(s) 709
Kzo9I GATC 4 cut(s) 850, 919, 946, 1156
LmnI GCTCC 4 cut(s) 533, 790, 1000, 1225
Lsp1109I GCAGC 4 cut(s) 218, 505, 559, 758
LweI GCATC 2 cut(s) 342, 808
MaeI CTAG 1 cut(s) 834
MaeII ACGT 1 cut(s) 160
MaeIII GTNAC 2 cut(s) 478, 1215
MalI GATC 4 cut(s) 852, 921, 948, 1158
MbiI CCGCTC 1 cut(s) 785
MboI GATC 4 cut(s) 850, 919, 946, 1156
MflI RGATCY 1 cut(s) 919
MhlI GDGCHC 2 cut(s) 62, 200
MluCI AATT 6 cut(s) 448, 933, 960, 973, 1119, 1188
MlyI GAGTC 4 cut(s) 475, 1015, 1143, 1240
MmeI TCCRAC 3 cut(s) 76, 214, 478
MroNI GCCGGC 1 cut(s) 707
MseI TTAA 3 cut(s) 701, 959, 1316
MspI CCGG 4 cut(s) 74, 203, 708, 1175
MspR9I CCNGG 1 cut(s) 731
MvaI CCWGG 1 cut(s) 731
MwoI GCNNNNNNNGC 4 cut(s) 74, 245, 418, 731
NaeI GCCGGC 1 cut(s) 709
NcoI CCATGG 1 cut(s) 397
NdeII GATC 4 cut(s) 850, 919, 946, 1156
NgoMIV GCCGGC 1 cut(s) 707
NlaIV GGNNCC 3 cut(s) 69, 78, 117
NmuCI GTSAC 2 cut(s) 478, 1215
NspI RCATGY 4 cut(s) 421, 491, 511, 1223
PaqCI CACCTGC 2 cut(s) 16, 154
PceI AGGCCT 1 cut(s) 889
PciI ACATGT 2 cut(s) 507, 1219
PdiI GCCGGC 1 cut(s) 709
PfeI GAWTC 1 cut(s) 460
PflMI CCANNNNNTGG 2 cut(s) 398, 623
PinAI ACCGGT 1 cut(s) 1174
PkrI GCNGC 4 cut(s) 208, 520, 574, 748
Ple19I CGATCG 1 cut(s) 949
PleI GAGTC 4 cut(s) 475, 1014, 1143, 1239
PpsI GAGTC 4 cut(s) 475, 1014, 1143, 1239
PpuMI RGGWCCY 1 cut(s) 116
PscI ACATGT 2 cut(s) 507, 1219
PsiI TTATAA 1 cut(s) 929
Psp5II RGGWCCY 1 cut(s) 116
Psp6I CCWGG 1 cut(s) 729
PspGI CCWGG 1 cut(s) 729
PspN4I GGNNCC 3 cut(s) 69, 78, 117
PspPI GGNCC 2 cut(s) 116, 581
PspPPI RGGWCCY 1 cut(s) 116
PstI CTGCAG 1 cut(s) 523
PsuI RGATCY 1 cut(s) 919
PvuI CGATCG 1 cut(s) 949
RsaI GTAC 5 cut(s) 216, 525, 1087, 1146, 1355
RsaNI GTAC 5 cut(s) 215, 524, 1086, 1145, 1354
SaqAI TTAA 3 cut(s) 701, 959, 1316
SatI GCNGC 4 cut(s) 207, 519, 573, 747
Sau3AI GATC 4 cut(s) 850, 919, 946, 1156
Sau96I GGNCC 2 cut(s) 116, 581
SchI GAGTC 4 cut(s) 475, 1015, 1143, 1240
ScrFI CCNGG 1 cut(s) 731
SduI GDGCHC 2 cut(s) 62, 200
SfaNI GCATC 2 cut(s) 342, 808
SfcI CTRYAG 3 cut(s) 102, 519, 1130
SinI GGWCC 2 cut(s) 116, 581
Sse9I AATT 6 cut(s) 448, 933, 960, 973, 1119, 1188
SseBI AGGCCT 1 cut(s) 889
SsiI CCGC 4 cut(s) 80, 654, 783, 1342
SspI AATATT 1 cut(s) 1314
SspMI CTAG 1 cut(s) 834
StuI AGGCCT 1 cut(s) 889
StyD4I CCNGG 1 cut(s) 729
StyI CCWWGG 1 cut(s) 397
TaaI ACNGT 1 cut(s) 296
TaiI ACGT 1 cut(s) 163
TasI AATT 6 cut(s) 448, 933, 960, 973, 1119, 1188
TatI WGTACW 2 cut(s) 1085, 1353
TfiI GAWTC 1 cut(s) 460
Tru1I TTAA 3 cut(s) 701, 959, 1316
Tru9I TTAA 3 cut(s) 701, 959, 1316
TscAI CASTG 3 cut(s) 352, 946, 1173
TseFI GTSAC 2 cut(s) 478, 1215
TseI GCWGC 4 cut(s) 206, 518, 572, 746
Tsp45I GTSAC 2 cut(s) 478, 1215
TspDTI ATGAA 6 cut(s) 29, 167, 321, 452, 669, 792
TspGWI ACGGA 2 cut(s) 330, 472
TspRI CASTG 3 cut(s) 352, 946, 1173
Van91I CCANNNNNTGG 2 cut(s) 398, 623
VpaK11BI GGWCC 2 cut(s) 116, 581
XagI CCTNNNNNAGG 1 cut(s) 261
XapI RAATTY 4 cut(s) 448, 933, 973, 1119
XceI RCATGY 4 cut(s) 421, 491, 511, 1223
XspI CTAG 1 cut(s) 834
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.