Rw1G008920

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0017777
Physical Location & Seq
Reverse (-)
19582472 .. 19586247
3776 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G008920.1

Sequence Viewer

Length: 1356 bp
ATGCCACCTGCAAACCAACAGCGTCCACCACCTCCCCTTCATTTCCATTTCCAACAGGGCTCTCTGGCACCACCGGCACCGCCAAATGTAGTTCAGCAGGCTATAGGTCAGCAGGGTCCTTATTTATATCAGACACCTATGCCACCTGCAAACCAACAACGTCCACCACCTCCCCTTCATTTCCATTTCCAACAGGGCTCTCGGGCAGCACCAGTACCACCAAATGTAGTTCAGCAGGCTATATATGCAGTCCCACCTCCGATAGGTCAGCAGGGTCGTTATTTATATCAGCACGGTTTTGTTGCCCCACCTCTCCCTACTCACCAAAGTTCATCTGTCCCGTTCAGTGGGATGCCAAATACAGGGCAATCTTATGGACACCCCACTCCACCAGTCCATGGAAGCACATGGCATAACATGCAACATTCTTCAACAGCAGGAAACTGGAATTTCCAACGGATTCATCCACCAGCACTTGTGACTCCGCATGCTCCTCCCTACCCATACATGTCAAAGGCTGCAGTACCACATGGAGCATTACCCCCTTCAAATAATACTACTTCTGGTTGTGCTGCACAAGGACCAACATGGTGTAGAGCTTTGTATCCAGCACAACCACAGGCTGGTCTTCAGCATAATCCACCACCCCCTCCTGCCTCTATTATTGTCAATCCCACTTCATTTGGAACTTCTGGACATTTAACAGCCGGCGCTTCTGAAATGGCTTCCTTGGCTCTCCTACCAGCAGCAAATCCTCAATCACCCTTTGCGCCATTGCCCACCGCTCCTTCACCTTCAACTTCATTGCCAAAGCTTGATGCTTTCAGTTTTCCTAGTCATCCCCACATTGATCGTAGGTCTAATAAACTTCTGTTGACTGAAACGAGGCCTCTAAATGCTTGTGACATGGAGATTGAAGATCCTCTTATAAGAATTTTCAGTGCCGATCGTGGTCTCTTAATTGAAATAACAAATTCAAAGTGTCCTCAATCACATGAGGAGCTGAGTCTTTCACAAAATAAGAAGATGAAGAAGAAGAAGAAGAAGAAAGGGTGTACAACCTCTGTGACGAATGATACAAGTAGTGAAATTCCCTCCCTAGAGCCTCAACTTGTACGACTCTCAGATGAACAAGCACCGCAACCTCTTAGAGAGAAAATTACTACAACAACAGAAATATGTTGCCAGTCACATGTGGAGCTGAGTCTTTCACAAAGTAGTAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAGGTGTAAAACCCCCGAGACAAATATTAAAAGTTGTGAAAGTCCCTCTATACAGCCTCAACTTGTACAAGTGACAGATCAAGAGGACCACTTATGGAGGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Surp

Protein Analysis

451

Amino Acids

49.21

Weight (kDa)

9.43

Isoelectric Point (pI)

74.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017777)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0330581
rosa_multiflora Rmu_sc0000167.1_g000006 Rmu_sc0000815.1_g000001
rosa_roxburghii Rroxscaffold_4G00319740
rosa_rugosa Rorug01G0089400 Rorug01G0089500 Rorug01G0089600
rosa_samantha Rh1AG107700 Rh1CG103500 Rh1DG113100
rosa_wichuraiana Rw0G004380 Rw1G008920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 929
AarI CACCTGC 2 cut(s) 16, 154
Acc36I ACCTGC 2 cut(s) 16, 154
AccB1I GGYRCC 2 cut(s) 67, 76
AccB7I CCANNNNNTGG 2 cut(s) 398, 623
AccBSI CCGCTC 1 cut(s) 785
AciI CCGC 4 cut(s) 80, 485, 783, 1139
AclWI GGATC 1 cut(s) 914
AcsI RAATTY 4 cut(s) 448, 933, 973, 1089
AcuI CTGAAG 1 cut(s) 614
AfaI GTAC 5 cut(s) 216, 525, 1057, 1116, 1317
AfiI CCNNNNNNNGG 5 cut(s) 263, 347, 362, 398, 623
AflIII ACRYGT 2 cut(s) 507, 1192
AgsI TTSAA 6 cut(s) 432, 549, 798, 917, 965, 978
AluBI AGCT 4 cut(s) 599, 814, 1003, 1201
AluI AGCT 4 cut(s) 599, 814, 1003, 1201
Alw26I GTCTC 2 cut(s) 959, 1262
AlwI GGATC 1 cut(s) 914
Ama87I CYCGRG 2 cut(s) 201, 1265
AoxI GGCC 1 cut(s) 887
ApeKI GCWGC 4 cut(s) 206, 518, 572, 746
ApoI RAATTY 4 cut(s) 448, 933, 973, 1089
AspLEI GCGC 2 cut(s) 713, 772
AspS9I GGNCC 3 cut(s) 116, 581, 1336
AsuHPI GGTGA 3 cut(s) 314, 753, 783
AvaI CYCGRG 2 cut(s) 201, 1265
AvaII GGWCC 3 cut(s) 116, 581, 1336
BanI GGYRCC 2 cut(s) 67, 76
BanII GRGCYC 2 cut(s) 62, 200
BbsI GAAGAC 1 cut(s) 620
BbvI GCAGC 4 cut(s) 218, 505, 559, 758
BciVI GTATCC 1 cut(s) 615
BcoDI GTCTC 2 cut(s) 959, 1262
BfaI CTAG 2 cut(s) 834, 1100
BfmI CTRYAG 2 cut(s) 102, 519
BfoI RGCGCY 1 cut(s) 714
BfuAI ACCTGC 2 cut(s) 16, 154
BfuI GTATCC 1 cut(s) 615
BisI GCNGC 4 cut(s) 207, 519, 573, 747
BlsI GCNGC 4 cut(s) 208, 520, 574, 748
Bme18I GGWCC 3 cut(s) 116, 581, 1336
BmeT110I CYCGRG 2 cut(s) 201, 1265
BmgT120I GGNCC 3 cut(s) 116, 581, 1336
BmiI GGNNCC 3 cut(s) 69, 78, 117
BmsI GCATC 2 cut(s) 342, 808
BpiI GAAGAC 1 cut(s) 620
BsaI GGTCTC 1 cut(s) 959
BsaJI CCNNGG 2 cut(s) 397, 729
Bsc4I CCNNNNNNNGG 5 cut(s) 263, 347, 362, 398, 623
Bse118I RCCGGY 2 cut(s) 73, 707
Bse1I ACTGG 4 cut(s) 212, 392, 449, 1186
Bse3DI GCAATG 2 cut(s) 773, 803
BseDI CCNNGG 2 cut(s) 397, 729
BseGI GGATG 3 cut(s) 357, 463, 838
BseLI CCNNNNNNNGG 5 cut(s) 263, 347, 362, 398, 623
BseMI GCAATG 2 cut(s) 773, 803
BseMII CTCAG 3 cut(s) 995, 1137, 1193
BseNI ACTGG 4 cut(s) 212, 392, 449, 1186
BseRI GAGGAG 2 cut(s) 483, 1013
BseXI GCAGC 4 cut(s) 218, 505, 559, 758
BsgI GTGCAG 1 cut(s) 558
Bsh1285I CGRYCG 1 cut(s) 949
BshFI GGCC 1 cut(s) 889
BshNI GGYRCC 2 cut(s) 67, 76
BsiEI CGRYCG 1 cut(s) 949
BsiHKCI CYCGRG 2 cut(s) 201, 1265
BsiSI CCGG 2 cut(s) 74, 708
BslFI GGGAC 3 cut(s) 236, 323, 1278
BslI CCNNNNNNNGG 5 cut(s) 263, 347, 362, 398, 623
BsmAI GTCTC 2 cut(s) 959, 1262
BsmFI GGGAC 3 cut(s) 236, 323, 1278
BsnI GGCC 1 cut(s) 889
Bso31I GGTCTC 1 cut(s) 959
BsoBI CYCGRG 2 cut(s) 201, 1265
Bsp1286I GDGCHC 2 cut(s) 62, 200
Bsp1407I TGTACA 2 cut(s) 1055, 1315
Bsp143I GATC 4 cut(s) 850, 919, 946, 1327
Bsp19I CCATGG 1 cut(s) 397
BspACI CCGC 4 cut(s) 80, 485, 783, 1139
BspANI GGCC 1 cut(s) 889
BspCNI CTCAG 3 cut(s) 996, 1136, 1194
BspLI GGNNCC 3 cut(s) 69, 78, 117
BspMAI CTGCAG 1 cut(s) 523
BspMI ACCTGC 2 cut(s) 16, 154
BspPI GGATC 1 cut(s) 914
BspT107I GGYRCC 2 cut(s) 67, 76
BspTNI GGTCTC 1 cut(s) 959
BsrBI CCGCTC 1 cut(s) 785
BsrDI GCAATG 2 cut(s) 773, 803
BsrFI RCCGGY 2 cut(s) 73, 707
BsrGI TGTACA 2 cut(s) 1055, 1315
BsrI ACTGG 4 cut(s) 212, 392, 449, 1186
BssAI RCCGGY 2 cut(s) 73, 707
BssECI CCNNGG 2 cut(s) 397, 729
BssMI GATC 4 cut(s) 850, 919, 946, 1327
BssT1I CCWWGG 2 cut(s) 397, 729
Bst4CI ACNGT 1 cut(s) 296
BstAPI GCANNNNNTGC 1 cut(s) 418
BstAUI TGTACA 2 cut(s) 1055, 1315
BstC8I GCNNGC 4 cut(s) 99, 237, 489, 709
BstDEI CTNAG 4 cut(s) 1004, 1123, 1148, 1202
BstDSI CCRYGG 1 cut(s) 397
BstENI CCTNNNNNAGG 1 cut(s) 261
BstF5I GGATG 3 cut(s) 357, 463, 838
BstH2I RGCGCY 1 cut(s) 714
BstHHI GCGC 2 cut(s) 713, 772
BstKTI GATC 4 cut(s) 853, 922, 949, 1330
BstMAI GTCTC 2 cut(s) 959, 1262
BstMBI GATC 4 cut(s) 850, 919, 946, 1327
BstMCI CGRYCG 1 cut(s) 949
BstMWI GCNNNNNNNGC 4 cut(s) 74, 245, 418, 731
BstNSI RCATGY 4 cut(s) 421, 491, 511, 1196
BstSFI CTRYAG 2 cut(s) 102, 519
BstV1I GCAGC 4 cut(s) 218, 505, 559, 758
BstV2I GAAGAC 1 cut(s) 620
BstX2I RGATCY 1 cut(s) 919
BstYI RGATCY 1 cut(s) 919
BsuI GTATCC 1 cut(s) 615
BsuRI GGCC 1 cut(s) 889
BtgI CCRYGG 1 cut(s) 397
BtsCI GGATG 3 cut(s) 357, 463, 838
BtsIMutI CAGTG 2 cut(s) 352, 946
BveI ACCTGC 2 cut(s) 16, 154
Cac8I GCNNGC 4 cut(s) 99, 237, 489, 709
CfoI GCGC 2 cut(s) 713, 772
Cfr10I RCCGGY 2 cut(s) 73, 707
Cfr13I GGNCC 3 cut(s) 116, 581, 1336
CseI GACGC 1 cut(s) 11
Csp6I GTAC 5 cut(s) 215, 524, 1056, 1115, 1316
CspCI CAANNNNNGTGG 2 cut(s) 664, 699
CviQI GTAC 5 cut(s) 215, 524, 1056, 1115, 1316
DdeI CTNAG 4 cut(s) 1004, 1123, 1148, 1202
DpnI GATC 4 cut(s) 852, 921, 948, 1329
DpnII GATC 4 cut(s) 850, 919, 946, 1327
Eco130I CCWWGG 2 cut(s) 397, 729
Eco147I AGGCCT 1 cut(s) 889
Eco24I GRGCYC 2 cut(s) 62, 200
Eco31I GGTCTC 1 cut(s) 959
Eco47I GGWCC 3 cut(s) 116, 581, 1336
Eco57I CTGAAG 1 cut(s) 614
Eco88I CYCGRG 2 cut(s) 201, 1265
EcoNI CCTNNNNNAGG 1 cut(s) 261
EcoO109I RGGNCCY 1 cut(s) 116
EcoT14I CCWWGG 2 cut(s) 397, 729
EcoT38I GRGCYC 2 cut(s) 62, 200
ErhI CCWWGG 2 cut(s) 397, 729
FalI AAGNNNNNCTT 2 cut(s) 909, 941
FaqI GGGAC 3 cut(s) 236, 323, 1278
Fnu4HI GCNGC 4 cut(s) 207, 519, 573, 747
FokI GGATG 3 cut(s) 364, 450, 825
FriOI GRGCYC 2 cut(s) 62, 200
Fsp4HI GCNGC 4 cut(s) 207, 519, 573, 747
FspBI CTAG 2 cut(s) 834, 1100
GlaI GCGC 2 cut(s) 712, 771
GluI GCNGC 4 cut(s) 207, 519, 573, 747
HaeII RGCGCY 1 cut(s) 714
HaeIII GGCC 1 cut(s) 889
HapII CCGG 2 cut(s) 74, 708
HgaI GACGC 1 cut(s) 11
HhaI GCGC 2 cut(s) 713, 772
Hin6I GCGC 2 cut(s) 711, 770
HinP1I GCGC 2 cut(s) 711, 770
HincII GTYRAC 1 cut(s) 876
HindII GTYRAC 1 cut(s) 876
HindIII AAGCTT 1 cut(s) 812
HinfI GANTC 5 cut(s) 460, 481, 1006, 1119, 1204
HpaII CCGG 2 cut(s) 74, 708
HphI GGTGA 3 cut(s) 314, 753, 783
Hpy166II GTNNAC 4 cut(s) 26, 164, 876, 1056
Hpy188I TCNGA 4 cut(s) 132, 261, 718, 1126
Hpy188III TCNNGA 2 cut(s) 693, 1331
Hpy8I GTNNAC 4 cut(s) 26, 164, 876, 1056
HpyAV CCTTC 5 cut(s) 47, 185, 555, 798, 804
HpyCH4III ACNGT 1 cut(s) 296
HpyCH4IV ACGT 1 cut(s) 160
HpyCH4V TGCA 6 cut(s) 11, 149, 248, 421, 521, 575
HpyF10VI GCNNNNNNNGC 4 cut(s) 74, 245, 418, 731
HpyF3I CTNAG 4 cut(s) 1004, 1123, 1148, 1202
HpySE526I ACGT 1 cut(s) 160
HspAI GCGC 2 cut(s) 711, 770
KroI GCCGGC 1 cut(s) 707
KroNI GCCGGC 1 cut(s) 709
Kzo9I GATC 4 cut(s) 850, 919, 946, 1327
LmnI GCTCC 5 cut(s) 496, 533, 790, 1000, 1198
Lsp1109I GCAGC 4 cut(s) 218, 505, 559, 758
LweI GCATC 2 cut(s) 342, 808
MaeI CTAG 2 cut(s) 834, 1100
MaeII ACGT 1 cut(s) 160
MaeIII GTNAC 5 cut(s) 478, 902, 1066, 1188, 1321
MalI GATC 4 cut(s) 852, 921, 948, 1329
MbiI CCGCTC 1 cut(s) 785
MboI GATC 4 cut(s) 850, 919, 946, 1327
MflI RGATCY 1 cut(s) 919
MhlI GDGCHC 2 cut(s) 62, 200
MluCI AATT 6 cut(s) 448, 933, 960, 973, 1089, 1158
MlyI GAGTC 4 cut(s) 475, 1015, 1113, 1213
MmeI TCCRAC 3 cut(s) 76, 214, 478
MroNI GCCGGC 1 cut(s) 707
MseI TTAA 3 cut(s) 701, 959, 1278
MspI CCGG 2 cut(s) 74, 708
MwoI GCNNNNNNNGC 4 cut(s) 74, 245, 418, 731
NaeI GCCGGC 1 cut(s) 709
NcoI CCATGG 1 cut(s) 397
NdeII GATC 4 cut(s) 850, 919, 946, 1327
NgoMIV GCCGGC 1 cut(s) 707
NlaIV GGNNCC 3 cut(s) 69, 78, 117
NmuCI GTSAC 5 cut(s) 478, 902, 1066, 1188, 1321
NspI RCATGY 4 cut(s) 421, 491, 511, 1196
PaeI GCATGC 1 cut(s) 491
PaqCI CACCTGC 2 cut(s) 16, 154
PceI AGGCCT 1 cut(s) 889
PciI ACATGT 2 cut(s) 507, 1192
PdiI GCCGGC 1 cut(s) 709
PfeI GAWTC 1 cut(s) 460
PflMI CCANNNNNTGG 2 cut(s) 398, 623
PkrI GCNGC 4 cut(s) 208, 520, 574, 748
Ple19I CGATCG 1 cut(s) 949
PleI GAGTC 4 cut(s) 475, 1014, 1113, 1212
PpsI GAGTC 4 cut(s) 475, 1014, 1113, 1212
PpuMI RGGWCCY 1 cut(s) 116
PscI ACATGT 2 cut(s) 507, 1192
PsiI TTATAA 1 cut(s) 929
Psp5II RGGWCCY 1 cut(s) 116
PspN4I GGNNCC 3 cut(s) 69, 78, 117
PspPI GGNCC 3 cut(s) 116, 581, 1336
PspPPI RGGWCCY 1 cut(s) 116
PstI CTGCAG 1 cut(s) 523
PsuI RGATCY 1 cut(s) 919
PvuI CGATCG 1 cut(s) 949
RsaI GTAC 5 cut(s) 216, 525, 1057, 1116, 1317
RsaNI GTAC 5 cut(s) 215, 524, 1056, 1115, 1316
SaqAI TTAA 3 cut(s) 701, 959, 1278
SatI GCNGC 4 cut(s) 207, 519, 573, 747
Sau3AI GATC 4 cut(s) 850, 919, 946, 1327
Sau96I GGNCC 3 cut(s) 116, 581, 1336
SchI GAGTC 4 cut(s) 475, 1015, 1113, 1213
SduI GDGCHC 2 cut(s) 62, 200
SfaNI GCATC 2 cut(s) 342, 808
SfcI CTRYAG 2 cut(s) 102, 519
SinI GGWCC 3 cut(s) 116, 581, 1336
SphI GCATGC 1 cut(s) 491
Sse9I AATT 6 cut(s) 448, 933, 960, 973, 1089, 1158
SseBI AGGCCT 1 cut(s) 889
SsiI CCGC 4 cut(s) 80, 485, 783, 1139
SspI AATATT 1 cut(s) 1276
SspMI CTAG 2 cut(s) 834, 1100
StuI AGGCCT 1 cut(s) 889
StyI CCWWGG 2 cut(s) 397, 729
TaaI ACNGT 1 cut(s) 296
TaiI ACGT 1 cut(s) 163
TasI AATT 6 cut(s) 448, 933, 960, 973, 1089, 1158
TatI WGTACW 2 cut(s) 1055, 1315
TfiI GAWTC 1 cut(s) 460
Tru1I TTAA 3 cut(s) 701, 959, 1278
Tru9I TTAA 3 cut(s) 701, 959, 1278
TscAI CASTG 2 cut(s) 352, 946
TseFI GTSAC 5 cut(s) 478, 902, 1066, 1188, 1321
TseI GCWGC 4 cut(s) 206, 518, 572, 746
Tsp45I GTSAC 5 cut(s) 478, 902, 1066, 1188, 1321
TspDTI ATGAA 8 cut(s) 29, 167, 321, 452, 669, 792, 1043, 1143
TspGWI ACGGA 1 cut(s) 472
TspRI CASTG 2 cut(s) 352, 946
Van91I CCANNNNNTGG 2 cut(s) 398, 623
VpaK11BI GGWCC 3 cut(s) 116, 581, 1336
XagI CCTNNNNNAGG 1 cut(s) 261
XapI RAATTY 4 cut(s) 448, 933, 973, 1089
XceI RCATGY 4 cut(s) 421, 491, 511, 1196
XspI CTAG 2 cut(s) 834, 1100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.