Rw0G004380

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00167
OG0017777
Physical Location & Seq
Reverse (-)
20606 .. 21541
936 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G004380.1

Sequence Viewer

Length: 936 bp
GCTCAGACACCCATGCCACCTGCAAACCAACAGCGTCCACCACCTCCCCTTCATTTCCATTTCCAACAGGGCTCTCTGGCACCACCGGCACCGCCAAATGTAGTTCAGCAGGCTATAGGTCAGCAGGGTCCTTATTTATATCAGACACCTATGCCACCTGCAAACCAACAACGTCCACCACCTCCCCTTCATTTCCATTTCCAACAGGGCTCTCCGGCAGCACCAGTACCACCAAATGTAGTTCAGCAGGCTATATATGCAGTCCCACCTCCGATAGGTCAGCAGGGTCGTTATTTATATCAGCACGATTTTGTTGCCCCACCTCTCCCTACTCACCAAAGTTCATCTGTTCCGTTCAGTGGGATGCCAAATACAGGGCAATCTTATGGACACCCCACTCCACTAGTCCATGGAAGCACATGGCATAACATGCAACATTCTTCAACATCAGGAAACTGGAATTTCCAACGGATTCATCCACCAGCACTTGTGACTCCGCATGCTCCTCCCTACCCATACATGTCAAAGGCTGCAGTACCACATGGAGCATTACCCCCTTCAAATAATACTACTTCTGGTTGTGCTGCACAAGGACCAACATGGTGTAGAGCTTTGTATCCAGCACAACCACAGGCTGGTCTTCAGCATAATCCACCACCCCCTCCCGCCTCTATTATTGTCAATCCCACTTCATTTGGAACTTCTGGACATTTAACAGCCGGCGCTTCTCAAATGGCTTACTTGGCTCTCCTACCAGCAGCAAATCCTCAATCACCCTTTGCGCCATTGCCCACCGCTCCTTCACCTTCAACTTCATTGCCAAAGCTTGATGCTTTCTGTTTTCCTAGTCATCCCCACATTGATCGTAGGTCTAATAAACTTCTGTTGACTGAAATGAGGCCTCTAAATGCTTCTGACATGGAGATTGAAGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Surp

Protein Analysis

311

Amino Acids

33.29

Weight (kDa)

9.08

Isoelectric Point (pI)

73.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017777)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0330581
rosa_multiflora Rmu_sc0000167.1_g000006 Rmu_sc0000815.1_g000001
rosa_roxburghii Rroxscaffold_4G00319740
rosa_rugosa Rorug01G0089400 Rorug01G0089500 Rorug01G0089600
rosa_samantha Rh1AG107700 Rh1CG103500 Rh1DG113100
rosa_wichuraiana Rw0G004380 Rw1G008920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 28, 166
Acc36I ACCTGC 2 cut(s) 28, 166
AccB1I GGYRCC 2 cut(s) 79, 88
AccB7I CCANNNNNTGG 1 cut(s) 635
AccBSI CCGCTC 1 cut(s) 797
AciI CCGC 4 cut(s) 92, 497, 666, 795
AcsI RAATTY 1 cut(s) 460
AcuI CTGAAG 1 cut(s) 626
AfaI GTAC 2 cut(s) 228, 537
AfiI CCNNNNNNNGG 4 cut(s) 275, 359, 374, 635
AflIII ACRYGT 1 cut(s) 519
AgsI TTSAA 4 cut(s) 444, 561, 810, 929
AhlI ACTAGT 1 cut(s) 403
AluBI AGCT 2 cut(s) 611, 826
AluI AGCT 2 cut(s) 611, 826
AoxI GGCC 1 cut(s) 899
ApeKI GCWGC 4 cut(s) 218, 530, 584, 758
ApoI RAATTY 1 cut(s) 460
AspLEI GCGC 2 cut(s) 725, 784
AspS9I GGNCC 2 cut(s) 128, 593
AsuHPI GGTGA 3 cut(s) 326, 765, 795
AvaII GGWCC 2 cut(s) 128, 593
BanI GGYRCC 2 cut(s) 79, 88
BanII GRGCYC 2 cut(s) 74, 212
BbsI GAAGAC 1 cut(s) 632
BbvI GCAGC 4 cut(s) 230, 517, 571, 770
BcgI CGANNNNNNTGC 2 cut(s) 296, 330
BciVI GTATCC 1 cut(s) 627
BcuI ACTAGT 1 cut(s) 403
BfaI CTAG 2 cut(s) 404, 846
BfmI CTRYAG 2 cut(s) 114, 531
BfoI RGCGCY 1 cut(s) 726
BfuAI ACCTGC 2 cut(s) 28, 166
BfuI GTATCC 1 cut(s) 627
BisI GCNGC 4 cut(s) 219, 531, 585, 759
BlsI GCNGC 4 cut(s) 220, 532, 586, 760
Bme18I GGWCC 2 cut(s) 128, 593
BmgT120I GGNCC 2 cut(s) 128, 593
BmiI GGNNCC 3 cut(s) 81, 90, 129
BmsI GCATC 2 cut(s) 354, 820
BpiI GAAGAC 1 cut(s) 632
BsaJI CCNNGG 1 cut(s) 409
Bsc4I CCNNNNNNNGG 4 cut(s) 275, 359, 374, 635
Bse118I RCCGGY 2 cut(s) 85, 719
Bse1I ACTGG 2 cut(s) 224, 461
Bse3DI GCAATG 2 cut(s) 785, 815
BseDI CCNNGG 1 cut(s) 409
BseGI GGATG 3 cut(s) 369, 475, 850
BseLI CCNNNNNNNGG 4 cut(s) 275, 359, 374, 635
BseMI GCAATG 2 cut(s) 785, 815
BseMII CTCAG 1 cut(s) 17
BseNI ACTGG 2 cut(s) 224, 461
BseRI GAGGAG 1 cut(s) 495
BseXI GCAGC 4 cut(s) 230, 517, 571, 770
BsgI GTGCAG 1 cut(s) 570
BshFI GGCC 1 cut(s) 901
BshNI GGYRCC 2 cut(s) 79, 88
BsiSI CCGG 3 cut(s) 86, 215, 720
BslFI GGGAC 1 cut(s) 248
BslI CCNNNNNNNGG 4 cut(s) 275, 359, 374, 635
BsmFI GGGAC 1 cut(s) 248
BsnI GGCC 1 cut(s) 901
Bsp1286I GDGCHC 2 cut(s) 74, 212
Bsp143I GATC 1 cut(s) 862
Bsp19I CCATGG 1 cut(s) 409
BspACI CCGC 4 cut(s) 92, 497, 666, 795
BspANI GGCC 1 cut(s) 901
BspCNI CTCAG 1 cut(s) 16
BspLI GGNNCC 3 cut(s) 81, 90, 129
BspMAI CTGCAG 1 cut(s) 535
BspMI ACCTGC 2 cut(s) 28, 166
BspT107I GGYRCC 2 cut(s) 79, 88
BsrBI CCGCTC 1 cut(s) 797
BsrDI GCAATG 2 cut(s) 785, 815
BsrFI RCCGGY 2 cut(s) 85, 719
BsrI ACTGG 2 cut(s) 224, 461
BssAI RCCGGY 2 cut(s) 85, 719
BssECI CCNNGG 1 cut(s) 409
BssMI GATC 1 cut(s) 862
BssT1I CCWWGG 1 cut(s) 409
BstAPI GCANNNNNTGC 1 cut(s) 430
BstC8I GCNNGC 4 cut(s) 111, 249, 501, 721
BstDEI CTNAG 1 cut(s) 3
BstDSI CCRYGG 1 cut(s) 409
BstENI CCTNNNNNAGG 1 cut(s) 273
BstF5I GGATG 3 cut(s) 369, 475, 850
BstH2I RGCGCY 1 cut(s) 726
BstHHI GCGC 2 cut(s) 725, 784
BstKTI GATC 1 cut(s) 865
BstMBI GATC 1 cut(s) 862
BstMWI GCNNNNNNNGC 4 cut(s) 86, 257, 430, 743
BstNSI RCATGY 3 cut(s) 433, 503, 523
BstSFI CTRYAG 2 cut(s) 114, 531
BstV1I GCAGC 4 cut(s) 230, 517, 571, 770
BstV2I GAAGAC 1 cut(s) 632
BsuI GTATCC 1 cut(s) 627
BsuRI GGCC 1 cut(s) 901
BtgI CCRYGG 1 cut(s) 409
BtsCI GGATG 3 cut(s) 369, 475, 850
BtsIMutI CAGTG 1 cut(s) 364
BveI ACCTGC 2 cut(s) 28, 166
Cac8I GCNNGC 4 cut(s) 111, 249, 501, 721
CfoI GCGC 2 cut(s) 725, 784
Cfr10I RCCGGY 2 cut(s) 85, 719
Cfr13I GGNCC 2 cut(s) 128, 593
CseI GACGC 1 cut(s) 23
Csp6I GTAC 2 cut(s) 227, 536
CspCI CAANNNNNGTGG 2 cut(s) 676, 711
CviAII CATG 9 cut(s) 13, 410, 420, 430, 500, 520, 542, 600, 919
CviQI GTAC 2 cut(s) 227, 536
DdeI CTNAG 1 cut(s) 3
DpnI GATC 1 cut(s) 864
DpnII GATC 1 cut(s) 862
Eco130I CCWWGG 1 cut(s) 409
Eco147I AGGCCT 1 cut(s) 901
Eco24I GRGCYC 2 cut(s) 74, 212
Eco47I GGWCC 2 cut(s) 128, 593
Eco57I CTGAAG 1 cut(s) 626
EcoNI CCTNNNNNAGG 1 cut(s) 273
EcoO109I RGGNCCY 1 cut(s) 128
EcoT14I CCWWGG 1 cut(s) 409
EcoT38I GRGCYC 2 cut(s) 74, 212
ErhI CCWWGG 1 cut(s) 409
FaeI CATG 9 cut(s) 16, 413, 423, 433, 503, 523, 545, 603, 922
FaqI GGGAC 1 cut(s) 248
FatI CATG 9 cut(s) 12, 409, 419, 429, 499, 519, 541, 599, 918
FauI CCCGC 1 cut(s) 673
Fnu4HI GCNGC 4 cut(s) 219, 531, 585, 759
FokI GGATG 3 cut(s) 376, 462, 837
FriOI GRGCYC 2 cut(s) 74, 212
Fsp4HI GCNGC 4 cut(s) 219, 531, 585, 759
FspBI CTAG 2 cut(s) 404, 846
GlaI GCGC 2 cut(s) 724, 783
GluI GCNGC 4 cut(s) 219, 531, 585, 759
HaeII RGCGCY 1 cut(s) 726
HaeIII GGCC 1 cut(s) 901
HapII CCGG 3 cut(s) 86, 215, 720
HgaI GACGC 1 cut(s) 23
HhaI GCGC 2 cut(s) 725, 784
Hin1II CATG 9 cut(s) 16, 413, 423, 433, 503, 523, 545, 603, 922
Hin6I GCGC 2 cut(s) 723, 782
HinP1I GCGC 2 cut(s) 723, 782
HincII GTYRAC 1 cut(s) 888
HindII GTYRAC 1 cut(s) 888
HindIII AAGCTT 1 cut(s) 824
HinfI GANTC 2 cut(s) 472, 493
HpaII CCGG 3 cut(s) 86, 215, 720
HphI GGTGA 3 cut(s) 326, 765, 795
Hpy166II GTNNAC 3 cut(s) 38, 176, 888
Hpy188I TCNGA 4 cut(s) 6, 144, 273, 916
Hpy188III TCNNGA 2 cut(s) 450, 705
Hpy8I GTNNAC 3 cut(s) 38, 176, 888
HpyAV CCTTC 6 cut(s) 59, 197, 567, 810, 816, 923
HpyCH4IV ACGT 1 cut(s) 172
HpyCH4V TGCA 6 cut(s) 23, 161, 260, 433, 533, 587
HpyF10VI GCNNNNNNNGC 4 cut(s) 86, 257, 430, 743
HpyF3I CTNAG 1 cut(s) 3
HpySE526I ACGT 1 cut(s) 172
Hsp92II CATG 9 cut(s) 16, 413, 423, 433, 503, 523, 545, 603, 922
HspAI GCGC 2 cut(s) 723, 782
KroI GCCGGC 1 cut(s) 719
KroNI GCCGGC 1 cut(s) 721
Kzo9I GATC 1 cut(s) 862
LmnI GCTCC 3 cut(s) 508, 545, 802
Lsp1109I GCAGC 4 cut(s) 230, 517, 571, 770
LweI GCATC 2 cut(s) 354, 820
MaeI CTAG 2 cut(s) 404, 846
MaeII ACGT 1 cut(s) 172
MaeIII GTNAC 1 cut(s) 490
MalI GATC 1 cut(s) 864
MbiI CCGCTC 1 cut(s) 797
MboI GATC 1 cut(s) 862
MboII GAAGA 2 cut(s) 432, 632
MhlI GDGCHC 2 cut(s) 74, 212
MluCI AATT 1 cut(s) 460
MlyI GAGTC 1 cut(s) 487
MmeI TCCRAC 3 cut(s) 88, 226, 490
MroNI GCCGGC 1 cut(s) 719
MseI TTAA 1 cut(s) 713
MspI CCGG 3 cut(s) 86, 215, 720
MwoI GCNNNNNNNGC 4 cut(s) 86, 257, 430, 743
NaeI GCCGGC 1 cut(s) 721
NcoI CCATGG 1 cut(s) 409
NdeII GATC 1 cut(s) 862
NgoMIV GCCGGC 1 cut(s) 719
NlaIII CATG 9 cut(s) 16, 413, 423, 433, 503, 523, 545, 603, 922
NlaIV GGNNCC 3 cut(s) 81, 90, 129
NmuCI GTSAC 1 cut(s) 490
NspI RCATGY 3 cut(s) 433, 503, 523
PaeI GCATGC 1 cut(s) 503
PaqCI CACCTGC 2 cut(s) 28, 166
PceI AGGCCT 1 cut(s) 901
PciI ACATGT 1 cut(s) 519
PdiI GCCGGC 1 cut(s) 721
PfeI GAWTC 1 cut(s) 472
PflMI CCANNNNNTGG 1 cut(s) 635
PkrI GCNGC 4 cut(s) 220, 532, 586, 760
PleI GAGTC 1 cut(s) 487
PpsI GAGTC 1 cut(s) 487
PpuMI RGGWCCY 1 cut(s) 128
PscI ACATGT 1 cut(s) 519
Psp5II RGGWCCY 1 cut(s) 128
PspN4I GGNNCC 3 cut(s) 81, 90, 129
PspPI GGNCC 2 cut(s) 128, 593
PspPPI RGGWCCY 1 cut(s) 128
PstI CTGCAG 1 cut(s) 535
RsaI GTAC 2 cut(s) 228, 537
RsaNI GTAC 2 cut(s) 227, 536
SaqAI TTAA 1 cut(s) 713
SatI GCNGC 4 cut(s) 219, 531, 585, 759
Sau3AI GATC 1 cut(s) 862
Sau96I GGNCC 2 cut(s) 128, 593
SchI GAGTC 1 cut(s) 487
SduI GDGCHC 2 cut(s) 74, 212
SfaNI GCATC 2 cut(s) 354, 820
SfcI CTRYAG 2 cut(s) 114, 531
SinI GGWCC 2 cut(s) 128, 593
SpeI ACTAGT 1 cut(s) 403
SphI GCATGC 1 cut(s) 503
Sse9I AATT 1 cut(s) 460
SseBI AGGCCT 1 cut(s) 901
SsiI CCGC 4 cut(s) 92, 497, 666, 795
SspMI CTAG 2 cut(s) 404, 846
StuI AGGCCT 1 cut(s) 901
StyI CCWWGG 1 cut(s) 409
TaiI ACGT 1 cut(s) 175
TasI AATT 1 cut(s) 460
TfiI GAWTC 1 cut(s) 472
Tru1I TTAA 1 cut(s) 713
Tru9I TTAA 1 cut(s) 713
TscAI CASTG 1 cut(s) 364
TseFI GTSAC 1 cut(s) 490
TseI GCWGC 4 cut(s) 218, 530, 584, 758
Tsp45I GTSAC 1 cut(s) 490
TspDTI ATGAA 6 cut(s) 41, 179, 333, 464, 681, 804
TspGWI ACGGA 2 cut(s) 342, 484
TspRI CASTG 1 cut(s) 364
Van91I CCANNNNNTGG 1 cut(s) 635
VpaK11BI GGWCC 2 cut(s) 128, 593
XagI CCTNNNNNAGG 1 cut(s) 273
XapI RAATTY 1 cut(s) 460
XceI RCATGY 3 cut(s) 433, 503, 523
XspI CTAG 2 cut(s) 404, 846
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.