Rmu_sc0000198.1_g000015

Phosphatidylinositol 4-kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000198.1
OG0014385
Physical Location & Seq
Reverse (-)
95021 .. 96652
1632 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000198.1_g000015.1.cds

Sequence Viewer

Length: 1632 bp
atggctgtagtagttgatcaacatcacggaatcaagccattaacccgatcccagagatgcagattacaatcctacacccatcttgattacagcatatttccccactcctttataaatacatgcggagttgctaatattcacaaaagcttttccaccccatgtctctcccaaactactgcactggaggacgactttgactctaatccacggattgagattgttggtggttgcagagttcctagggtacatgctcttgtagttgaggttgccatagctatggcttccggtgctgatctattgccagtgccaagcggactagggggggcctacttcttatgtagtcgaaatggtgacaatattgctgtagctaagcccatagatgaagaacccttagccttcaataatcctaaaggcttcggaggtaggatgctgggccaacctggtttaaaacgctcagttcggattggtgaatctggaattcgagaattagcagcttatctccttgaccatggtggattcgctggtgttcctccaactgctttagtaaaaatttctcatgatgcattccgcgttaataataatgcagctaaaatttcagctactccgtacaagattgcttctcttcagcggtttgtagatcatgactttgatgcaggagagttgggtttctctggcttctcaatagcttcagttcatcacattggaatttttgatgtaagagtcctaaatcttgataggcacgcaggtaatatgcttgttaagaagtataagcagaacaactatgcagttggtgtggctgagcttgtgcctattgatcatgggctttgccttcctgagtggcttgatgatccatactttgaatggctgcactggcctcaagcttcaattccattttctgagtctgagattgagtacatatccaatctcaatccctctaaagatgcggagcttttacgaactcagattccctctttacgtgaggctgctatccgtgttcttgtgctctgcaccatcttcttgaagcgggctacagctgctgggctttgtcttgctgatataggtgaaatgatgactcgacaattctgcgctggcgaagaaagattgagtacattagaaaatctttgcttacaagttaaagccacaatgtctggtacagatgaccaaaacagagcaacaattggagaagctgaaatatttcaacttcagaatgatattaaagaaagtttcgatgagaattttgatcttcctcaagtcttacagatctatcctggaatgtcaaggttttcatctgtaggatcaatgactgagttgaccgatgcatatatctatccaccatttaaggaaagcaatcatggcaatgatgattctgacagtatgaatatgaaaggtaatagtggttatgttgatggtagtactagtggtagtcataaggtcggcggtctgatggagagagtgagtttctcagtaaaaaacttcaattgtgaaacaggggcaatttctttcggagacatgagtaaagatgaatgggatttgttcctggacaattttgagaagcttttgcccgacatcctcctcaagggcacaaattacttgagcttgaagaaaaggttgagaacttcctgcaagtattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PI3_PI4_kinase

Protein Analysis

543

Amino Acids

59.85

Weight (kDa)

5.61

Isoelectric Point (pI)

37.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014385)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40850 AT3G56600 AT3G56600 AT3G56600
fragaria_vesca FvH4_1g29290
malus_domestica MD00G1140900.v1.1
prunus_persica Prupe.7G019100_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0494791
rosa_laevigata RLG00000022662
rosa_multiflora Rmu_sc0000198.1_g000015
rosa_roxburghii Rroxscaffold_6G00390900
rosa_rugosa Rorug03G0268200
rosa_samantha Rh3AG317000 Rh3BG352200 Rh3CG349200 Rh3DG351600
rosa_wichuraiana Rw3G027650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 113
Acc36I ACCTGC 1 cut(s) 734
AccII CGCG 1 cut(s) 570
AciI CCGC 7 cut(s) 123, 312, 568, 628, 944, 1024, 1437
AclWI GGATC 3 cut(s) 42, 842, 1303
AcsI RAATTY 5 cut(s) 477, 549, 591, 705, 1234
AcuI CTGAAG 3 cut(s) 608, 672, 1187
AfaI GTAC 6 cut(s) 246, 608, 914, 1108, 1153, 1414
AfiI CCNNNNNNNGG 1 cut(s) 1576
AgsI TTSAA 7 cut(s) 400, 860, 885, 1021, 1199, 1477, 1600
AhlI ACTAGT 1 cut(s) 1415
AjnI CCWGG 3 cut(s) 439, 1267, 1536
AloI GAACNNNNNNTCC 2 cut(s) 949, 981
Alw21I GWGCWC 1 cut(s) 1005
Alw26I GTCTC 2 cut(s) 167, 1500
AlwI GGATC 3 cut(s) 42, 842, 1303
AlwNI CAGNNNCTG 1 cut(s) 1037
AoxI GGCC 3 cut(s) 324, 433, 872
ApeKI GCWGC 5 cut(s) 491, 584, 865, 983, 1034
ApoI RAATTY 5 cut(s) 477, 549, 591, 705, 1234
Asp700I GAANNNNTTC 1 cut(s) 1194
AspA2I CCTAGG 1 cut(s) 239
AspLEI GCGC 1 cut(s) 1088
AspS9I GGNCC 2 cut(s) 324, 433
AsuHPI GGTGA 3 cut(s) 362, 479, 1073
AvrII CCTAGG 1 cut(s) 239
BaeGI GKGCMC 1 cut(s) 1583
Bbv12I GWGCWC 1 cut(s) 1005
BbvI GCAGC 5 cut(s) 503, 596, 852, 970, 1021
BccI CCATC 4 cut(s) 87, 1019, 1400, 1438
BcgI CGANNNNNNTGC 2 cut(s) 1065, 1099
BciT130I CCWGG 3 cut(s) 441, 1269, 1538
BclI TGATCA 2 cut(s) 16, 814
BcoDI GTCTC 2 cut(s) 167, 1500
BcuI ACTAGT 1 cut(s) 1415
BfaI CTAG 3 cut(s) 240, 317, 1416
BfmI CTRYAG 4 cut(s) 6, 363, 1029, 1290
BfuAI ACCTGC 1 cut(s) 734
BglII AGATCT 1 cut(s) 1260
BisI GCNGC 5 cut(s) 492, 585, 866, 984, 1035
BlnI CCTAGG 1 cut(s) 239
BlpI GCTNAGC 2 cut(s) 369, 798
BlsI GCNGC 5 cut(s) 493, 586, 867, 985, 1036
BmcAI AGTACT 1 cut(s) 1414
Bme1390I CCNGG 3 cut(s) 441, 1269, 1538
BmgT120I GGNCC 2 cut(s) 324, 433
BmiI GGNNCC 1 cut(s) 325
BmrFI CCNGG 3 cut(s) 441, 1269, 1538
BmsI GCATC 6 cut(s) 47, 417, 550, 640, 931, 1306
BpmI CTGGAG 1 cut(s) 203
Bpu10I CCTNAGC 1 cut(s) 391
Bpu1102I GCTNAGC 2 cut(s) 369, 798
BpuEI CTTGAG 4 cut(s) 861, 1233, 1559, 1612
BsaAI YACGTR 1 cut(s) 977
BsaBI GATNNNNATC 2 cut(s) 21, 67
BsaJI CCNNGG 3 cut(s) 206, 239, 508
BsaWI WCCGGW 1 cut(s) 284
Bsc4I CCNNNNNNNGG 1 cut(s) 1576
Bse1I ACTGG 3 cut(s) 186, 302, 875
Bse3DI GCAATG 1 cut(s) 1363
Bse8I GATNNNNATC 2 cut(s) 21, 67
BseBI CCWGG 3 cut(s) 441, 1269, 1538
BseDI CCNNGG 3 cut(s) 206, 239, 508
BseGI GGATG 2 cut(s) 432, 1566
BseJI GATNNNNATC 2 cut(s) 21, 67
BseLI CCNNNNNNNGG 1 cut(s) 1576
BseMI GCAATG 1 cut(s) 1363
BseMII CTCAG 8 cut(s) 468, 789, 825, 888, 894, 974, 1296, 1476
BseNI ACTGG 3 cut(s) 186, 302, 875
BseRI GAGGAG 1 cut(s) 1562
BseSI GKGCMC 1 cut(s) 1583
BseXI GCAGC 5 cut(s) 503, 596, 852, 970, 1021
BseYI CCCAGC 2 cut(s) 430, 1037
BsgI GTGCAG 3 cut(s) 162, 851, 991
Bsh1236I CGCG 1 cut(s) 570
BshFI GGCC 3 cut(s) 326, 435, 874
BsiHKAI GWGCWC 1 cut(s) 1005
BsiSI CCGG 1 cut(s) 285
BslI CCNNNNNNNGG 1 cut(s) 1576
BsmAI GTCTC 2 cut(s) 167, 1500
BsmI GAATGC 1 cut(s) 563
BsnI GGCC 3 cut(s) 326, 435, 874
Bsp1286I GDGCHC 2 cut(s) 1005, 1583
Bsp143I GATC 9 cut(s) 16, 47, 292, 637, 814, 847, 1240, 1260, 1295
Bsp1720I GCTNAGC 2 cut(s) 369, 798
Bsp19I CCATGG 1 cut(s) 508
BspACI CCGC 7 cut(s) 123, 312, 568, 628, 944, 1024, 1437
BspANI GGCC 3 cut(s) 326, 435, 874
BspCNI CTCAG 8 cut(s) 467, 790, 826, 889, 895, 973, 1297, 1475
BspFNI CGCG 1 cut(s) 570
BspHI TCATGA 2 cut(s) 556, 640
BspLI GGNNCC 1 cut(s) 325
BspMI ACCTGC 1 cut(s) 734
BspPI GGATC 3 cut(s) 42, 842, 1303
BsrDI GCAATG 1 cut(s) 1363
BsrI ACTGG 3 cut(s) 186, 302, 875
BssECI CCNNGG 3 cut(s) 206, 239, 508
BssMI GATC 9 cut(s) 16, 47, 292, 637, 814, 847, 1240, 1260, 1295
BssT1I CCWWGG 2 cut(s) 239, 508
Bst2UI CCWGG 3 cut(s) 441, 1269, 1538
Bst4CI ACNGT 1 cut(s) 1373
Bst6I CTCTTC 1 cut(s) 627
BstBAI YACGTR 1 cut(s) 977
BstC8I GCNNGC 3 cut(s) 741, 1026, 1090
BstDSI CCRYGG 2 cut(s) 206, 508
BstENI CCTNNNNNAGG 1 cut(s) 1574
BstF5I GGATG 2 cut(s) 432, 1566
BstFNI CGCG 1 cut(s) 570
BstHHI GCGC 1 cut(s) 1088
BstKTI GATC 9 cut(s) 19, 50, 295, 640, 817, 850, 1243, 1263, 1298
BstMAI GTCTC 2 cut(s) 167, 1500
BstMBI GATC 9 cut(s) 16, 47, 292, 637, 814, 847, 1240, 1260, 1295
BstMWI GCNNNNNNNGC 4 cut(s) 287, 871, 1034, 1353
BstNI CCWGG 3 cut(s) 441, 1269, 1538
BstNSI RCATGY 2 cut(s) 123, 251
BstSCI CCNGG 3 cut(s) 439, 1267, 1536
BstSFI CTRYAG 4 cut(s) 6, 363, 1029, 1290
BstSLI GKGCMC 1 cut(s) 1583
BstUI CGCG 1 cut(s) 570
BstV1I GCAGC 5 cut(s) 503, 596, 852, 970, 1021
BstX2I RGATCY 1 cut(s) 1260
BstXI CCANNNNNNTGG 1 cut(s) 277
BstYI RGATCY 1 cut(s) 1260
BsuRI GGCC 3 cut(s) 326, 435, 874
BtgI CCRYGG 2 cut(s) 206, 508
BtsCI GGATG 2 cut(s) 432, 1566
BtsIMutI CAGTG 3 cut(s) 179, 309, 868
BveI ACCTGC 1 cut(s) 734
Cac8I GCNNGC 3 cut(s) 741, 1026, 1090
CaiI CAGNNNCTG 1 cut(s) 1037
CciI TCATGA 2 cut(s) 556, 640
CfoI GCGC 1 cut(s) 1088
Cfr13I GGNCC 2 cut(s) 324, 433
CsiI ACCWGGT 1 cut(s) 439
Csp6I GTAC 6 cut(s) 245, 607, 913, 1107, 1152, 1413
CviAII CATG 9 cut(s) 120, 159, 248, 509, 557, 641, 818, 1352, 1510
CviQI GTAC 6 cut(s) 245, 607, 913, 1107, 1152, 1413
DpnI GATC 9 cut(s) 18, 49, 294, 639, 816, 849, 1242, 1262, 1297
DpnII GATC 9 cut(s) 16, 47, 292, 637, 814, 847, 1240, 1260, 1295
DraI TTTAAA 1 cut(s) 447
Eam1104I CTCTTC 1 cut(s) 627
EarI CTCTTC 1 cut(s) 627
Eco130I CCWWGG 2 cut(s) 239, 508
Eco57I CTGAAG 3 cut(s) 608, 672, 1187
EcoNI CCTNNNNNAGG 1 cut(s) 1574
EcoO109I RGGNCCY 1 cut(s) 324
EcoRI GAATTC 1 cut(s) 477
EcoRII CCWGG 3 cut(s) 439, 1267, 1536
EcoT14I CCWWGG 2 cut(s) 239, 508
EcoT22I ATGCAT 2 cut(s) 565, 1321
ErhI CCWWGG 2 cut(s) 239, 508
FaeI CATG 9 cut(s) 123, 162, 251, 512, 560, 644, 821, 1355, 1513
FatI CATG 9 cut(s) 119, 158, 247, 508, 556, 640, 817, 1351, 1509
FauI CCCGC 1 cut(s) 1017
FbaI TGATCA 2 cut(s) 16, 814
Fnu4HI GCNGC 5 cut(s) 492, 585, 866, 984, 1035
FokI GGATG 2 cut(s) 439, 1553
Fsp4HI GCNGC 5 cut(s) 492, 585, 866, 984, 1035
FspBI CTAG 3 cut(s) 240, 317, 1416
GlaI GCGC 1 cut(s) 1087
GluI GCNGC 5 cut(s) 492, 585, 866, 984, 1035
GsaI CCCAGC 2 cut(s) 434, 1041
GsuI CTGGAG 1 cut(s) 203
HaeIII GGCC 3 cut(s) 326, 435, 874
HapII CCGG 1 cut(s) 285
HhaI GCGC 1 cut(s) 1088
Hin1II CATG 9 cut(s) 123, 162, 251, 512, 560, 644, 821, 1355, 1513
Hin6I GCGC 1 cut(s) 1086
HinP1I GCGC 1 cut(s) 1086
HincII GTYRAC 1 cut(s) 1311
HindII GTYRAC 1 cut(s) 1311
HindIII AAGCTT 3 cut(s) 145, 879, 1553
HinfI GANTC 9 cut(s) 30, 197, 470, 516, 720, 899, 964, 1072, 1364
HpaII CCGG 1 cut(s) 285
HphI GGTGA 3 cut(s) 362, 479, 1073
Hpy166II GTNNAC 1 cut(s) 1311
Hpy188I TCNGA 9 cut(s) 419, 462, 898, 904, 963, 1206, 1369, 1443, 1505
Hpy188III TCNNGA 8 cut(s) 83, 474, 482, 557, 641, 731, 833, 1018
Hpy8I GTNNAC 1 cut(s) 1311
HpyAV CCTTC 2 cut(s) 406, 839
HpyCH4III ACNGT 1 cut(s) 1373
HpyCH4IV ACGT 1 cut(s) 976
HpyF10VI GCNNNNNNNGC 4 cut(s) 287, 871, 1034, 1353
HpySE526I ACGT 1 cut(s) 976
Hsp92II CATG 9 cut(s) 123, 162, 251, 512, 560, 644, 821, 1355, 1513
HspAI GCGC 1 cut(s) 1086
Ksp22I TGATCA 2 cut(s) 16, 814
Kzo9I GATC 9 cut(s) 16, 47, 292, 637, 814, 847, 1240, 1260, 1295
LmnI GCTCC 1 cut(s) 946
Lsp1109I GCAGC 5 cut(s) 503, 596, 852, 970, 1021
LweI GCATC 6 cut(s) 47, 417, 550, 640, 931, 1306
MabI ACCWGGT 1 cut(s) 439
MaeI CTAG 3 cut(s) 240, 317, 1416
MaeII ACGT 1 cut(s) 976
MaeIII GTNAC 1 cut(s) 350
MalI GATC 9 cut(s) 18, 49, 294, 639, 816, 849, 1242, 1262, 1297
MboI GATC 9 cut(s) 16, 47, 292, 637, 814, 847, 1240, 1260, 1295
MboII GAAGA 6 cut(s) 395, 614, 1006, 1106, 1235, 1612
MfeI CAATTG 2 cut(s) 1176, 1477
MflI RGATCY 1 cut(s) 1260
MhlI GDGCHC 2 cut(s) 1005, 1583
MlyI GAGTC 4 cut(s) 191, 729, 908, 1066
MmeI TCCRAC 1 cut(s) 557
Mph1103I ATGCAT 2 cut(s) 565, 1321
MroXI GAANNNNTTC 1 cut(s) 1194
MseI TTAA 8 cut(s) 41, 446, 573, 759, 1134, 1215, 1338, 1630
MslI CAYNNNNRTG 2 cut(s) 275, 1356
MspA1I CMGCKG 2 cut(s) 628, 1034
MspI CCGG 1 cut(s) 285
MspR9I CCNGG 3 cut(s) 441, 1269, 1538
MunI CAATTG 2 cut(s) 1176, 1477
Mva1269I GAATGC 1 cut(s) 563
MvaI CCWGG 3 cut(s) 441, 1269, 1538
MvnI CGCG 1 cut(s) 570
MwoI GCNNNNNNNGC 4 cut(s) 287, 871, 1034, 1353
NcoI CCATGG 1 cut(s) 508
NdeII GATC 9 cut(s) 16, 47, 292, 637, 814, 847, 1240, 1260, 1295
NlaIII CATG 9 cut(s) 123, 162, 251, 512, 560, 644, 821, 1355, 1513
NlaIV GGNNCC 1 cut(s) 325
NmuCI GTSAC 1 cut(s) 350
NsiI ATGCAT 2 cut(s) 565, 1321
NspI RCATGY 2 cut(s) 123, 251
PagI TCATGA 2 cut(s) 556, 640
PctI GAATGC 1 cut(s) 563
PdmI GAANNNNTTC 1 cut(s) 1194
PfeI GAWTC 5 cut(s) 30, 470, 516, 964, 1364
PfoI TCCNGGA 2 cut(s) 1267, 1536
PkrI GCNGC 5 cut(s) 493, 586, 867, 985, 1036
PleI GAGTC 4 cut(s) 191, 728, 907, 1066
PpsI GAGTC 4 cut(s) 191, 728, 907, 1066
Ppu21I YACGTR 1 cut(s) 977
PsiI TTATAA 1 cut(s) 113
Psp6I CCWGG 3 cut(s) 439, 1267, 1536
PspFI CCCAGC 2 cut(s) 430, 1037
PspGI CCWGG 3 cut(s) 439, 1267, 1536
PspN4I GGNNCC 1 cut(s) 325
PspPI GGNCC 2 cut(s) 324, 433
PstNI CAGNNNCTG 1 cut(s) 1037
PsuI RGATCY 1 cut(s) 1260
PvuII CAGCTG 1 cut(s) 1034
RsaI GTAC 6 cut(s) 246, 608, 914, 1108, 1153, 1414
RsaNI GTAC 6 cut(s) 245, 607, 913, 1107, 1152, 1413
RseI CAYNNNNRTG 2 cut(s) 275, 1356
SaqAI TTAA 8 cut(s) 41, 446, 573, 759, 1134, 1215, 1338, 1630
SatI GCNGC 5 cut(s) 492, 585, 866, 984, 1035
Sau3AI GATC 9 cut(s) 16, 47, 292, 637, 814, 847, 1240, 1260, 1295
Sau96I GGNCC 2 cut(s) 324, 433
ScaI AGTACT 1 cut(s) 1414
SchI GAGTC 4 cut(s) 191, 729, 908, 1066
ScrFI CCNGG 3 cut(s) 441, 1269, 1538
SduI GDGCHC 2 cut(s) 1005, 1583
SexAI ACCWGGT 1 cut(s) 439
SfaNI GCATC 6 cut(s) 47, 417, 550, 640, 931, 1306
SfcI CTRYAG 4 cut(s) 6, 363, 1029, 1290
SmiMI CAYNNNNRTG 2 cut(s) 275, 1356
SmlI CTYRAG 4 cut(s) 876, 1248, 1574, 1591
SmoI CTYRAG 4 cut(s) 876, 1248, 1574, 1591
SpeI ACTAGT 1 cut(s) 1415
SsiI CCGC 7 cut(s) 123, 312, 568, 628, 944, 1024, 1437
SspI AATATT 3 cut(s) 136, 358, 1194
SspMI CTAG 3 cut(s) 240, 317, 1416
StyD4I CCNGG 3 cut(s) 439, 1267, 1536
StyI CCWWGG 2 cut(s) 239, 508
TaaI ACNGT 1 cut(s) 1373
TaiI ACGT 1 cut(s) 979
TaqI TCGA 4 cut(s) 343, 481, 1075, 1227
TaqII GACCGA 1 cut(s) 1328
TatI WGTACW 3 cut(s) 912, 1106, 1412
TfiI GAWTC 5 cut(s) 30, 470, 516, 964, 1364
Tru1I TTAA 8 cut(s) 41, 446, 573, 759, 1134, 1215, 1338, 1630
Tru9I TTAA 8 cut(s) 41, 446, 573, 759, 1134, 1215, 1338, 1630
TscAI CASTG 3 cut(s) 186, 309, 875
TseFI GTSAC 1 cut(s) 350
TseI GCWGC 5 cut(s) 491, 584, 865, 983, 1034
Tsp45I GTSAC 1 cut(s) 350
TspDTI ATGAA 6 cut(s) 396, 683, 1275, 1391, 1397, 1536
TspGWI ACGGA 4 cut(s) 42, 223, 594, 980
TspRI CASTG 3 cut(s) 186, 309, 875
XagI CCTNNNNNAGG 1 cut(s) 1574
XapI RAATTY 5 cut(s) 477, 549, 591, 705, 1234
XceI RCATGY 2 cut(s) 123, 251
XcmI CCANNNNNNNNNTGG 1 cut(s) 858
XmaJI CCTAGG 1 cut(s) 239
XmnI GAANNNNTTC 1 cut(s) 1194
XspI CTAG 3 cut(s) 240, 317, 1416
ZrmI AGTACT 1 cut(s) 1414
Zsp2I ATGCAT 2 cut(s) 565, 1321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.