Rmu_sc0000198.1_g000015

Phosphatidylinositol 4-kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000198.1
OG0014385
Physical Location & Seq
Reverse (-)
95021 .. 96652
1632 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1632 bp
atggctgtagtagttgatcaacatcacggaatcaagccattaacccgatcccagagatgcagattacaatcctacacccatcttgattacagcatatttccccactcctttataaatacatgcggagttgctaatattcacaaaagcttttccaccccatgtctctcccaaactactgcactggaggacgactttgactctaatccacggattgagattgttggtggttgcagagttcctagggtacatgctcttgtagttgaggttgccatagctatggcttccggtgctgatctattgccagtgccaagcggactagggggggcctacttcttatgtagtcgaaatggtgacaatattgctgtagctaagcccatagatgaagaacccttagccttcaataatcctaaaggcttcggaggtaggatgctgggccaacctggtttaaaacgctcagttcggattggtgaatctggaattcgagaattagcagcttatctccttgaccatggtggattcgctggtgttcctccaactgctttagtaaaaatttctcatgatgcattccgcgttaataataatgcagctaaaatttcagctactccgtacaagattgcttctcttcagcggtttgtagatcatgactttgatgcaggagagttgggtttctctggcttctcaatagcttcagttcatcacattggaatttttgatgtaagagtcctaaatcttgataggcacgcaggtaatatgcttgttaagaagtataagcagaacaactatgcagttggtgtggctgagcttgtgcctattgatcatgggctttgccttcctgagtggcttgatgatccatactttgaatggctgcactggcctcaagcttcaattccattttctgagtctgagattgagtacatatccaatctcaatccctctaaagatgcggagcttttacgaactcagattccctctttacgtgaggctgctatccgtgttcttgtgctctgcaccatcttcttgaagcgggctacagctgctgggctttgtcttgctgatataggtgaaatgatgactcgacaattctgcgctggcgaagaaagattgagtacattagaaaatctttgcttacaagttaaagccacaatgtctggtacagatgaccaaaacagagcaacaattggagaagctgaaatatttcaacttcagaatgatattaaagaaagtttcgatgagaattttgatcttcctcaagtcttacagatctatcctggaatgtcaaggttttcatctgtaggatcaatgactgagttgaccgatgcatatatctatccaccatttaaggaaagcaatcatggcaatgatgattctgacagtatgaatatgaaaggtaatagtggttatgttgatggtagtactagtggtagtcataaggtcggcggtctgatggagagagtgagtttctcagtaaaaaacttcaattgtgaaacaggggcaatttctttcggagacatgagtaaagatgaatgggatttgttcctggacaattttgagaagcttttgcccgacatcctcctcaagggcacaaattacttgagcttgaagaaaaggttgagaacttcctgcaagtattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PI3_PI4_kinase

Protein Analysis

543

Amino Acids

59.85

Weight (kDa)

5.61

Isoelectric Point (pI)

37.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PI3_PI4_kinase PF00454 120 - 352 2.1e-41 Phosphatidylinositol 3- and 4-kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014385)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40850 AT3G56600 AT3G56600 AT3G56600
fragaria_vesca FvH4_1g29290
malus_domestica MD00G1140900.v1.1
prunus_persica Prupe.7G019100_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0494791
rosa_laevigata RLG00000022662
rosa_multiflora Rmu_sc0000198.1_g000015
rosa_roxburghii Rroxscaffold_6G00390900
rosa_rugosa Rorug03G0268200
rosa_samantha Rh3AG317000 Rh3BG352200 Rh3CG349200 Rh3DG351600
rosa_wichuraiana Rw3G027650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 113
Acc36I ACCTGC 1 cut(s) 734
AccII CGCG 1 cut(s) 570
AciI CCGC 7 cut(s) 123, 312, 568, 628, 944, 1024, 1437
AclWI GGATC 3 cut(s) 42, 842, 1303
AcsI RAATTY 5 cut(s) 477, 549, 591, 705, 1234
AcuI CTGAAG 3 cut(s) 608, 672, 1187
AfaI GTAC 6 cut(s) 246, 608, 914, 1108, 1153, 1414
AfiI CCNNNNNNNGG 1 cut(s) 1576
AgsI TTSAA 7 cut(s) 400, 860, 885, 1021, 1199, 1477, 1600
AhlI ACTAGT 1 cut(s) 1415
AjnI CCWGG 3 cut(s) 439, 1267, 1536
AloI GAACNNNNNNTCC 2 cut(s) 949, 981
Alw21I GWGCWC 1 cut(s) 1005
Alw26I GTCTC 2 cut(s) 167, 1500
AlwI GGATC 3 cut(s) 42, 842, 1303
AlwNI CAGNNNCTG 1 cut(s) 1037
AoxI GGCC 3 cut(s) 324, 433, 872
ApeKI GCWGC 5 cut(s) 491, 584, 865, 983, 1034
ApoI RAATTY 5 cut(s) 477, 549, 591, 705, 1234
Asp700I GAANNNNTTC 1 cut(s) 1194
AspA2I CCTAGG 1 cut(s) 239
AspLEI GCGC 1 cut(s) 1088
AspS9I GGNCC 2 cut(s) 324, 433
AsuHPI GGTGA 3 cut(s) 362, 479, 1073
AvrII CCTAGG 1 cut(s) 239
BaeGI GKGCMC 1 cut(s) 1583
Bbv12I GWGCWC 1 cut(s) 1005
BbvI GCAGC 5 cut(s) 503, 596, 852, 970, 1021
BccI CCATC 4 cut(s) 87, 1019, 1400, 1438
BcgI CGANNNNNNTGC 2 cut(s) 1065, 1099
BciT130I CCWGG 3 cut(s) 441, 1269, 1538
BclI TGATCA 2 cut(s) 16, 814
BcoDI GTCTC 2 cut(s) 167, 1500
BcuI ACTAGT 1 cut(s) 1415
BfaI CTAG 3 cut(s) 240, 317, 1416
BfmI CTRYAG 4 cut(s) 6, 363, 1029, 1290
BfuAI ACCTGC 1 cut(s) 734
BglII AGATCT 1 cut(s) 1260
BisI GCNGC 5 cut(s) 492, 585, 866, 984, 1035
BlnI CCTAGG 1 cut(s) 239
BlpI GCTNAGC 2 cut(s) 369, 798
BlsI GCNGC 5 cut(s) 493, 586, 867, 985, 1036
BmcAI AGTACT 1 cut(s) 1414
Bme1390I CCNGG 3 cut(s) 441, 1269, 1538
BmgT120I GGNCC 2 cut(s) 324, 433
BmiI GGNNCC 1 cut(s) 325
BmrFI CCNGG 3 cut(s) 441, 1269, 1538
BmsI GCATC 6 cut(s) 47, 417, 550, 640, 931, 1306
BpmI CTGGAG 1 cut(s) 203
Bpu10I CCTNAGC 1 cut(s) 391
Bpu1102I GCTNAGC 2 cut(s) 369, 798
BpuEI CTTGAG 4 cut(s) 861, 1233, 1559, 1612
BsaAI YACGTR 1 cut(s) 977
BsaBI GATNNNNATC 2 cut(s) 21, 67
BsaJI CCNNGG 3 cut(s) 206, 239, 508
BsaWI WCCGGW 1 cut(s) 284
Bsc4I CCNNNNNNNGG 1 cut(s) 1576
Bse1I ACTGG 3 cut(s) 186, 302, 875
Bse3DI GCAATG 1 cut(s) 1363
Bse8I GATNNNNATC 2 cut(s) 21, 67
BseBI CCWGG 3 cut(s) 441, 1269, 1538
BseDI CCNNGG 3 cut(s) 206, 239, 508
BseGI GGATG 2 cut(s) 432, 1566
BseJI GATNNNNATC 2 cut(s) 21, 67
BseLI CCNNNNNNNGG 1 cut(s) 1576
BseMI GCAATG 1 cut(s) 1363
BseMII CTCAG 8 cut(s) 468, 789, 825, 888, 894, 974, 1296, 1476
BseNI ACTGG 3 cut(s) 186, 302, 875
BseRI GAGGAG 1 cut(s) 1562
BseSI GKGCMC 1 cut(s) 1583
BseXI GCAGC 5 cut(s) 503, 596, 852, 970, 1021
BseYI CCCAGC 2 cut(s) 430, 1037
BsgI GTGCAG 3 cut(s) 162, 851, 991
Bsh1236I CGCG 1 cut(s) 570
BshFI GGCC 3 cut(s) 326, 435, 874
BsiHKAI GWGCWC 1 cut(s) 1005
BsiSI CCGG 1 cut(s) 285
BslI CCNNNNNNNGG 1 cut(s) 1576
BsmAI GTCTC 2 cut(s) 167, 1500
BsmI GAATGC 1 cut(s) 563
BsnI GGCC 3 cut(s) 326, 435, 874
Bsp1286I GDGCHC 2 cut(s) 1005, 1583
Bsp143I GATC 9 cut(s) 16, 47, 292, 637, 814, 847, 1240, 1260, 1295
Bsp1720I GCTNAGC 2 cut(s) 369, 798
Bsp19I CCATGG 1 cut(s) 508
BspACI CCGC 7 cut(s) 123, 312, 568, 628, 944, 1024, 1437
BspANI GGCC 3 cut(s) 326, 435, 874
BspCNI CTCAG 8 cut(s) 467, 790, 826, 889, 895, 973, 1297, 1475
BspFNI CGCG 1 cut(s) 570
BspHI TCATGA 2 cut(s) 556, 640
BspLI GGNNCC 1 cut(s) 325
BspMI ACCTGC 1 cut(s) 734
BspPI GGATC 3 cut(s) 42, 842, 1303
BsrDI GCAATG 1 cut(s) 1363
BsrI ACTGG 3 cut(s) 186, 302, 875
BssECI CCNNGG 3 cut(s) 206, 239, 508
BssMI GATC 9 cut(s) 16, 47, 292, 637, 814, 847, 1240, 1260, 1295
BssT1I CCWWGG 2 cut(s) 239, 508
Bst2UI CCWGG 3 cut(s) 441, 1269, 1538
Bst4CI ACNGT 1 cut(s) 1373
Bst6I CTCTTC 1 cut(s) 627
BstBAI YACGTR 1 cut(s) 977
BstC8I GCNNGC 3 cut(s) 741, 1026, 1090
BstDSI CCRYGG 2 cut(s) 206, 508
BstENI CCTNNNNNAGG 1 cut(s) 1574
BstF5I GGATG 2 cut(s) 432, 1566
BstFNI CGCG 1 cut(s) 570
BstHHI GCGC 1 cut(s) 1088
BstKTI GATC 9 cut(s) 19, 50, 295, 640, 817, 850, 1243, 1263, 1298
BstMAI GTCTC 2 cut(s) 167, 1500
BstMBI GATC 9 cut(s) 16, 47, 292, 637, 814, 847, 1240, 1260, 1295
BstMWI GCNNNNNNNGC 4 cut(s) 287, 871, 1034, 1353
BstNI CCWGG 3 cut(s) 441, 1269, 1538
BstNSI RCATGY 2 cut(s) 123, 251
BstSCI CCNGG 3 cut(s) 439, 1267, 1536
BstSFI CTRYAG 4 cut(s) 6, 363, 1029, 1290
BstSLI GKGCMC 1 cut(s) 1583
BstUI CGCG 1 cut(s) 570
BstV1I GCAGC 5 cut(s) 503, 596, 852, 970, 1021
BstX2I RGATCY 1 cut(s) 1260
BstXI CCANNNNNNTGG 1 cut(s) 277
BstYI RGATCY 1 cut(s) 1260
BsuRI GGCC 3 cut(s) 326, 435, 874
BtgI CCRYGG 2 cut(s) 206, 508
BtsCI GGATG 2 cut(s) 432, 1566
BtsIMutI CAGTG 3 cut(s) 179, 309, 868
BveI ACCTGC 1 cut(s) 734
Cac8I GCNNGC 3 cut(s) 741, 1026, 1090
CaiI CAGNNNCTG 1 cut(s) 1037
CciI TCATGA 2 cut(s) 556, 640
CfoI GCGC 1 cut(s) 1088
Cfr13I GGNCC 2 cut(s) 324, 433
CsiI ACCWGGT 1 cut(s) 439
Csp6I GTAC 6 cut(s) 245, 607, 913, 1107, 1152, 1413
CviAII CATG 9 cut(s) 120, 159, 248, 509, 557, 641, 818, 1352, 1510
CviQI GTAC 6 cut(s) 245, 607, 913, 1107, 1152, 1413
DpnI GATC 9 cut(s) 18, 49, 294, 639, 816, 849, 1242, 1262, 1297
DpnII GATC 9 cut(s) 16, 47, 292, 637, 814, 847, 1240, 1260, 1295
DraI TTTAAA 1 cut(s) 447
Eam1104I CTCTTC 1 cut(s) 627
EarI CTCTTC 1 cut(s) 627
Eco130I CCWWGG 2 cut(s) 239, 508
Eco57I CTGAAG 3 cut(s) 608, 672, 1187
EcoNI CCTNNNNNAGG 1 cut(s) 1574
EcoO109I RGGNCCY 1 cut(s) 324
EcoRI GAATTC 1 cut(s) 477
EcoRII CCWGG 3 cut(s) 439, 1267, 1536
EcoT14I CCWWGG 2 cut(s) 239, 508
EcoT22I ATGCAT 2 cut(s) 565, 1321
ErhI CCWWGG 2 cut(s) 239, 508
FaeI CATG 9 cut(s) 123, 162, 251, 512, 560, 644, 821, 1355, 1513
FatI CATG 9 cut(s) 119, 158, 247, 508, 556, 640, 817, 1351, 1509
FauI CCCGC 1 cut(s) 1017
FbaI TGATCA 2 cut(s) 16, 814
Fnu4HI GCNGC 5 cut(s) 492, 585, 866, 984, 1035
FokI GGATG 2 cut(s) 439, 1553
Fsp4HI GCNGC 5 cut(s) 492, 585, 866, 984, 1035
FspBI CTAG 3 cut(s) 240, 317, 1416
GlaI GCGC 1 cut(s) 1087
GluI GCNGC 5 cut(s) 492, 585, 866, 984, 1035
GsaI CCCAGC 2 cut(s) 434, 1041
GsuI CTGGAG 1 cut(s) 203
HaeIII GGCC 3 cut(s) 326, 435, 874
HapII CCGG 1 cut(s) 285
HhaI GCGC 1 cut(s) 1088
Hin1II CATG 9 cut(s) 123, 162, 251, 512, 560, 644, 821, 1355, 1513
Hin6I GCGC 1 cut(s) 1086
HinP1I GCGC 1 cut(s) 1086
HincII GTYRAC 1 cut(s) 1311
HindII GTYRAC 1 cut(s) 1311
HindIII AAGCTT 3 cut(s) 145, 879, 1553
HinfI GANTC 9 cut(s) 30, 197, 470, 516, 720, 899, 964, 1072, 1364
HpaII CCGG 1 cut(s) 285
HphI GGTGA 3 cut(s) 362, 479, 1073
Hpy166II GTNNAC 1 cut(s) 1311
Hpy188I TCNGA 9 cut(s) 419, 462, 898, 904, 963, 1206, 1369, 1443, 1505
Hpy188III TCNNGA 8 cut(s) 83, 474, 482, 557, 641, 731, 833, 1018
Hpy8I GTNNAC 1 cut(s) 1311
HpyAV CCTTC 2 cut(s) 406, 839
HpyCH4III ACNGT 1 cut(s) 1373
HpyCH4IV ACGT 1 cut(s) 976
HpyF10VI GCNNNNNNNGC 4 cut(s) 287, 871, 1034, 1353
HpySE526I ACGT 1 cut(s) 976
Hsp92II CATG 9 cut(s) 123, 162, 251, 512, 560, 644, 821, 1355, 1513
HspAI GCGC 1 cut(s) 1086
Ksp22I TGATCA 2 cut(s) 16, 814
Kzo9I GATC 9 cut(s) 16, 47, 292, 637, 814, 847, 1240, 1260, 1295
LmnI GCTCC 1 cut(s) 946
Lsp1109I GCAGC 5 cut(s) 503, 596, 852, 970, 1021
LweI GCATC 6 cut(s) 47, 417, 550, 640, 931, 1306
MabI ACCWGGT 1 cut(s) 439
MaeI CTAG 3 cut(s) 240, 317, 1416
MaeII ACGT 1 cut(s) 976
MaeIII GTNAC 1 cut(s) 350
MalI GATC 9 cut(s) 18, 49, 294, 639, 816, 849, 1242, 1262, 1297
MboI GATC 9 cut(s) 16, 47, 292, 637, 814, 847, 1240, 1260, 1295
MboII GAAGA 6 cut(s) 395, 614, 1006, 1106, 1235, 1612
MfeI CAATTG 2 cut(s) 1176, 1477
MflI RGATCY 1 cut(s) 1260
MhlI GDGCHC 2 cut(s) 1005, 1583
MlyI GAGTC 4 cut(s) 191, 729, 908, 1066
MmeI TCCRAC 1 cut(s) 557
Mph1103I ATGCAT 2 cut(s) 565, 1321
MroXI GAANNNNTTC 1 cut(s) 1194
MseI TTAA 8 cut(s) 41, 446, 573, 759, 1134, 1215, 1338, 1630
MslI CAYNNNNRTG 2 cut(s) 275, 1356
MspA1I CMGCKG 2 cut(s) 628, 1034
MspI CCGG 1 cut(s) 285
MspR9I CCNGG 3 cut(s) 441, 1269, 1538
MunI CAATTG 2 cut(s) 1176, 1477
Mva1269I GAATGC 1 cut(s) 563
MvaI CCWGG 3 cut(s) 441, 1269, 1538
MvnI CGCG 1 cut(s) 570
MwoI GCNNNNNNNGC 4 cut(s) 287, 871, 1034, 1353
NcoI CCATGG 1 cut(s) 508
NdeII GATC 9 cut(s) 16, 47, 292, 637, 814, 847, 1240, 1260, 1295
NlaIII CATG 9 cut(s) 123, 162, 251, 512, 560, 644, 821, 1355, 1513
NlaIV GGNNCC 1 cut(s) 325
NmuCI GTSAC 1 cut(s) 350
NsiI ATGCAT 2 cut(s) 565, 1321
NspI RCATGY 2 cut(s) 123, 251
PagI TCATGA 2 cut(s) 556, 640
PctI GAATGC 1 cut(s) 563
PdmI GAANNNNTTC 1 cut(s) 1194
PfeI GAWTC 5 cut(s) 30, 470, 516, 964, 1364
PfoI TCCNGGA 2 cut(s) 1267, 1536
PkrI GCNGC 5 cut(s) 493, 586, 867, 985, 1036
PleI GAGTC 4 cut(s) 191, 728, 907, 1066
PpsI GAGTC 4 cut(s) 191, 728, 907, 1066
Ppu21I YACGTR 1 cut(s) 977
PsiI TTATAA 1 cut(s) 113
Psp6I CCWGG 3 cut(s) 439, 1267, 1536
PspFI CCCAGC 2 cut(s) 430, 1037
PspGI CCWGG 3 cut(s) 439, 1267, 1536
PspN4I GGNNCC 1 cut(s) 325
PspPI GGNCC 2 cut(s) 324, 433
PstNI CAGNNNCTG 1 cut(s) 1037
PsuI RGATCY 1 cut(s) 1260
PvuII CAGCTG 1 cut(s) 1034
RsaI GTAC 6 cut(s) 246, 608, 914, 1108, 1153, 1414
RsaNI GTAC 6 cut(s) 245, 607, 913, 1107, 1152, 1413
RseI CAYNNNNRTG 2 cut(s) 275, 1356
SaqAI TTAA 8 cut(s) 41, 446, 573, 759, 1134, 1215, 1338, 1630
SatI GCNGC 5 cut(s) 492, 585, 866, 984, 1035
Sau3AI GATC 9 cut(s) 16, 47, 292, 637, 814, 847, 1240, 1260, 1295
Sau96I GGNCC 2 cut(s) 324, 433
ScaI AGTACT 1 cut(s) 1414
SchI GAGTC 4 cut(s) 191, 729, 908, 1066
ScrFI CCNGG 3 cut(s) 441, 1269, 1538
SduI GDGCHC 2 cut(s) 1005, 1583
SexAI ACCWGGT 1 cut(s) 439
SfaNI GCATC 6 cut(s) 47, 417, 550, 640, 931, 1306
SfcI CTRYAG 4 cut(s) 6, 363, 1029, 1290
SmiMI CAYNNNNRTG 2 cut(s) 275, 1356
SmlI CTYRAG 4 cut(s) 876, 1248, 1574, 1591
SmoI CTYRAG 4 cut(s) 876, 1248, 1574, 1591
SpeI ACTAGT 1 cut(s) 1415
SsiI CCGC 7 cut(s) 123, 312, 568, 628, 944, 1024, 1437
SspI AATATT 3 cut(s) 136, 358, 1194
SspMI CTAG 3 cut(s) 240, 317, 1416
StyD4I CCNGG 3 cut(s) 439, 1267, 1536
StyI CCWWGG 2 cut(s) 239, 508
TaaI ACNGT 1 cut(s) 1373
TaiI ACGT 1 cut(s) 979
TaqI TCGA 4 cut(s) 343, 481, 1075, 1227
TaqII GACCGA 1 cut(s) 1328
TatI WGTACW 3 cut(s) 912, 1106, 1412
TfiI GAWTC 5 cut(s) 30, 470, 516, 964, 1364
Tru1I TTAA 8 cut(s) 41, 446, 573, 759, 1134, 1215, 1338, 1630
Tru9I TTAA 8 cut(s) 41, 446, 573, 759, 1134, 1215, 1338, 1630
TscAI CASTG 3 cut(s) 186, 309, 875
TseFI GTSAC 1 cut(s) 350
TseI GCWGC 5 cut(s) 491, 584, 865, 983, 1034
Tsp45I GTSAC 1 cut(s) 350
TspDTI ATGAA 6 cut(s) 396, 683, 1275, 1391, 1397, 1536
TspGWI ACGGA 4 cut(s) 42, 223, 594, 980
TspRI CASTG 3 cut(s) 186, 309, 875
XagI CCTNNNNNAGG 1 cut(s) 1574
XapI RAATTY 5 cut(s) 477, 549, 591, 705, 1234
XceI RCATGY 2 cut(s) 123, 251
XcmI CCANNNNNNNNNTGG 1 cut(s) 858
XmaJI CCTAGG 1 cut(s) 239
XmnI GAANNNNTTC 1 cut(s) 1194
XspI CTAG 3 cut(s) 240, 317, 1416
ZrmI AGTACT 1 cut(s) 1414
Zsp2I ATGCAT 2 cut(s) 565, 1321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.