Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000258.1

Orthogroup ID

OG0019781

Physical Location & Seq

Genomic Coordinates Forward (+)

80377 .. 80697

Gene Structure 321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

atggatgatactgatgctgattcactaaaaaaagcagctgaatatctaatagatacgctacaggatctggcagctgtaattctgggctcttgtcctggtgatgagaaggtaagtttggttgcagcattcactccaggggttgtgaatttgggaatacaggcagggaagtttatagggcctatagctaagctgtgtggcgggggtgggggtggaagacccaattttgctcaggctggtgggaggaagcctgagaatttgtcagatgcacttgaaaaagctcgatctgaaatcttcttgcttctctctgaaaaggcaagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000049 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004812 GO:0004813 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006412 GO:0006418 GO:0006419 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016020 GO:0016070 GO:0016597 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0031406 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0036094 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

DHHA1 tRNA-synt_2c tRNA_SAD

Protein Analysis

106

Amino Acids

10.86

Weight (kDa)

4.82

Isoelectric Point (pI)

33.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHHA1	PF02272	2 - 96	1.2e-14	DHHA1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019781)

Species	Orthologous Gene IDs
malus_domestica	MD05G1130100.v1.1 MD05G1130200.v1.1
rosa_multiflora	Rmu_sc0000258.1_g000017
rosa_roxburghii	Rroxscaffold_7G00189760 Rroxscaffold_7G00190040
rosa_samantha	Rh6BG231000 Rh7DG059100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	198
AclWI	GGATC	1 cut(s)	72
AcsI	RAATTY	2 cut(s)	145, 253
AgsI	TTSAA	1 cut(s)	272
AjnI	CCWGG	2 cut(s)	94, 133
AjuI	GAANNNNNNNTTGG	2 cut(s)	98, 130
AluBI	AGCT	6 cut(s)	38, 74, 185, 190, 278, 318
AluI	AGCT	6 cut(s)	38, 74, 185, 190, 278, 318
AlwI	GGATC	1 cut(s)	72
AlwNI	CAGNNNCTG	1 cut(s)	67
AoxI	GGCC	1 cut(s)	176
ApeKI	GCWGC	3 cut(s)	35, 71, 122
ApoI	RAATTY	2 cut(s)	145, 253
AspS9I	GGNCC	1 cut(s)	176
AsuHPI	GGTGA	1 cut(s)	110
BanII	GRGCYC	1 cut(s)	89
BbsI	GAAGAC	1 cut(s)	220
BbvI	GCAGC	3 cut(s)	47, 83, 134
BciT130I	CCWGG	2 cut(s)	96, 135
BfmI	CTRYAG	2 cut(s)	59, 180
BisI	GCNGC	3 cut(s)	36, 72, 123
BlpI	GCTNAGC	1 cut(s)	186
BlsI	GCNGC	3 cut(s)	37, 73, 124
Bme1390I	CCNGG	2 cut(s)	96, 135
BmgT120I	GGNCC	1 cut(s)	176
BmrFI	CCNGG	2 cut(s)	96, 135
BmsI	GCATC	2 cut(s)	4, 253
BpiI	GAAGAC	1 cut(s)	220
BpmI	CTGGAG	1 cut(s)	117
Bpu10I	CCTNAGC	1 cut(s)	228
Bpu1102I	GCTNAGC	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	134
BseBI	CCWGG	2 cut(s)	96, 135
BseDI	CCNNGG	1 cut(s)	134
BseGI	GGATG	1 cut(s)	10
BseMII	CTCAG	2 cut(s)	240, 242
BseXI	GCAGC	3 cut(s)	47, 83, 134
BshFI	GGCC	1 cut(s)	178
BsmI	GAATGC	1 cut(s)	125
BsnI	GGCC	1 cut(s)	178
Bsp1286I	GDGCHC	1 cut(s)	89
Bsp143I	GATC	2 cut(s)	64, 281
Bsp1720I	GCTNAGC	1 cut(s)	186
BspACI	CCGC	1 cut(s)	198
BspANI	GGCC	1 cut(s)	178
BspCNI	CTCAG	2 cut(s)	241, 241
BspPI	GGATC	1 cut(s)	72
BssECI	CCNNGG	1 cut(s)	134
BssMI	GATC	2 cut(s)	64, 281
Bst2UI	CCWGG	2 cut(s)	96, 135
BstC8I	GCNNGC	1 cut(s)	316
BstDEI	CTNAG	3 cut(s)	186, 228, 249
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	2 cut(s)	67, 284
BstMBI	GATC	2 cut(s)	64, 281
BstNI	CCWGG	2 cut(s)	96, 135
BstSCI	CCNGG	2 cut(s)	94, 133
BstSFI	CTRYAG	2 cut(s)	59, 180
BstV1I	GCAGC	3 cut(s)	47, 83, 134
BstV2I	GAAGAC	1 cut(s)	220
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
BsuRI	GGCC	1 cut(s)	178
BtsCI	GGATG	1 cut(s)	10
Cac8I	GCNNGC	1 cut(s)	316
CaiI	CAGNNNCTG	1 cut(s)	67
Cfr13I	GGNCC	1 cut(s)	176
DdeI	CTNAG	3 cut(s)	186, 228, 249
DpnI	GATC	2 cut(s)	66, 283
DpnII	GATC	2 cut(s)	64, 281
Eco24I	GRGCYC	1 cut(s)	89
EcoO109I	RGGNCCY	1 cut(s)	176
EcoRII	CCWGG	2 cut(s)	94, 133
EcoT38I	GRGCYC	1 cut(s)	89
FaiI	YATR	2 cut(s)	173, 182
FauI	CCCGC	1 cut(s)	191
Fnu4HI	GCNGC	3 cut(s)	36, 72, 123
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	89
Fsp4HI	GCNGC	3 cut(s)	36, 72, 123
GluI	GCNGC	3 cut(s)	36, 72, 123
GsuI	CTGGAG	1 cut(s)	117
HaeIII	GGCC	1 cut(s)	178
HinfI	GANTC	1 cut(s)	20
HphI	GGTGA	1 cut(s)	110
Hpy188I	TCNGA	3 cut(s)	262, 286, 307
HpyAV	CCTTC	1 cut(s)	100
HpyCH4V	TGCA	2 cut(s)	122, 266
HpyF3I	CTNAG	3 cut(s)	186, 228, 249
Kzo9I	GATC	2 cut(s)	64, 281
Lsp1109I	GCAGC	3 cut(s)	47, 83, 134
LweI	GCATC	2 cut(s)	4, 253
MalI	GATC	2 cut(s)	66, 283
MboI	GATC	2 cut(s)	64, 281
MboII	GAAGA	2 cut(s)	225, 283
MflI	RGATCY	1 cut(s)	64
MhlI	GDGCHC	1 cut(s)	89
MluCI	AATT	4 cut(s)	78, 145, 220, 253
MnlI	CCTC	1 cut(s)	234
MspA1I	CMGCKG	2 cut(s)	38, 74
MspR9I	CCNGG	2 cut(s)	96, 135
Mva1269I	GAATGC	1 cut(s)	125
MvaI	CCWGG	2 cut(s)	96, 135
NdeII	GATC	2 cut(s)	64, 281
PctI	GAATGC	1 cut(s)	125
PfeI	GAWTC	1 cut(s)	20
PkrI	GCNGC	3 cut(s)	37, 73, 124
Psp6I	CCWGG	2 cut(s)	94, 133
PspGI	CCWGG	2 cut(s)	94, 133
PspPI	GGNCC	1 cut(s)	176
PstNI	CAGNNNCTG	1 cut(s)	67
PsuI	RGATCY	1 cut(s)	64
PvuII	CAGCTG	2 cut(s)	38, 74
SatI	GCNGC	3 cut(s)	36, 72, 123
Sau3AI	GATC	2 cut(s)	64, 281
Sau96I	GGNCC	1 cut(s)	176
ScrFI	CCNGG	2 cut(s)	96, 135
SduI	GDGCHC	1 cut(s)	89
SetI	ASST	7 cut(s)	40, 76, 111, 187, 192, 280, 320
SfaNI	GCATC	2 cut(s)	4, 253
SfcI	CTRYAG	2 cut(s)	59, 180
Sse9I	AATT	4 cut(s)	78, 145, 220, 253
SsiI	CCGC	1 cut(s)	198
StyD4I	CCNGG	2 cut(s)	94, 133
TaqI	TCGA	1 cut(s)	280
TasI	AATT	4 cut(s)	78, 145, 220, 253
TfiI	GAWTC	1 cut(s)	20
TseI	GCWGC	3 cut(s)	35, 71, 122
XapI	RAATTY	2 cut(s)	145, 253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.