Rh6BG231000

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0019781
Physical Location & Seq
Forward (+)
43586926 .. 43589648
2723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG231000.1

Sequence Viewer

Length: 582 bp
ATGAAACAGCTGTGTTCCACCCTCAAAGTGAAAGCTGAAGAAGTAACAAACAGAGTAGACAATCTCTTAGAGGAGTTACGAATGACAAGGAATGAAGTTTCTAGTTTGCGTGAAAAGGCTGCTGTTTACAAAGCATCACAGTTGGCAGCCAAGGCTGTTTCTGTGGGAACTTCAAATATCAGGTATCCGTTGGATCCATATGATCGTATATGGGATGATCATCAAAGCTTTGCACCATTTCATGTGTCAACTGGTTTGAAGACTCAACTTATTACCTACAATTTTTTGGGATTAAAGGAGAATCTCCCAGCTGATATCCTTCAAACCGCAAGAGTTTGGGCACAGAGGGTTGTCTTGACATGTAACTTATATCTTGACACCATGGCAGATTACTACATTGTCCTCTACTTTGCTGGGATTCTACCTGTGTTTCCTTCAGTCGACATCCTGCTTAATGGTGATGTTGCAAAATCAAATTCTACTGTAAGAAGCTCAGAAGTTAGTGCACTATACTTCACGCAGAGAGGAATAAATGAGAAAGTAGTGATGTTAACATCAAGGCATGGAGCCCATCATCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_4 LRR_8 Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

193

Amino Acids

21.75

Weight (kDa)

8.49

Isoelectric Point (pI)

30.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 53 - 172 3.2e-10 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019781)

Species Orthologous Gene IDs
malus_domestica MD05G1130100.v1.1 MD05G1130200.v1.1
rosa_multiflora Rmu_sc0000258.1_g000017
rosa_roxburghii Rroxscaffold_7G00189760 Rroxscaffold_7G00190040
rosa_samantha Rh6BG231000 Rh7DG059100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 57, 441
AciI CCGC 1 cut(s) 327
AclWI GGATC 2 cut(s) 188, 201
AcsI RAATTY 1 cut(s) 475
AcuI CTGAAG 2 cut(s) 57, 420
AflIII ACRYGT 1 cut(s) 359
AgsI TTSAA 3 cut(s) 174, 259, 323
AluBI AGCT 5 cut(s) 10, 35, 228, 311, 492
AluI AGCT 5 cut(s) 10, 35, 228, 311, 492
Alw21I GWGCWC 1 cut(s) 508
Alw44I GTGCAC 1 cut(s) 504
AlwI GGATC 2 cut(s) 188, 201
ApaLI GTGCAC 1 cut(s) 504
ApeKI GCWGC 2 cut(s) 119, 146
ApoI RAATTY 1 cut(s) 475
AsuHPI GGTGA 1 cut(s) 470
BaeGI GKGCMC 2 cut(s) 343, 508
BamHI GGATCC 1 cut(s) 193
BanII GRGCYC 1 cut(s) 571
BbsI GAAGAC 1 cut(s) 266
Bbv12I GWGCWC 1 cut(s) 508
BbvI GCAGC 2 cut(s) 106, 158
BccI CCATC 1 cut(s) 579
BciVI GTATCC 1 cut(s) 195
BclI TGATCA 1 cut(s) 217
BfaI CTAG 1 cut(s) 102
BfuI GTATCC 1 cut(s) 195
BisI GCNGC 2 cut(s) 120, 147
BlsI GCNGC 2 cut(s) 121, 148
BmiI GGNNCC 2 cut(s) 195, 568
BmsI GCATC 1 cut(s) 143
BpiI GAAGAC 1 cut(s) 266
BsaBI GATNNNNATC 1 cut(s) 219
BsaJI CCNNGG 2 cut(s) 150, 381
Bse1I ACTGG 1 cut(s) 256
Bse8I GATNNNNATC 1 cut(s) 219
BseDI CCNNGG 2 cut(s) 150, 381
BseGI GGATG 2 cut(s) 220, 444
BseJI GATNNNNATC 1 cut(s) 219
BseMII CTCAG 1 cut(s) 507
BseNI ACTGG 1 cut(s) 256
BseRI GAGGAG 1 cut(s) 86
BseSI GKGCMC 2 cut(s) 343, 508
BseXI GCAGC 2 cut(s) 106, 158
BseYI CCCAGC 2 cut(s) 307, 413
BsiHKAI GWGCWC 1 cut(s) 508
Bsp1286I GDGCHC 3 cut(s) 343, 508, 571
Bsp143I GATC 3 cut(s) 193, 202, 217
Bsp19I CCATGG 1 cut(s) 381
BspACI CCGC 1 cut(s) 327
BspCNI CTCAG 1 cut(s) 506
BspLI GGNNCC 2 cut(s) 195, 568
BspPI GGATC 2 cut(s) 188, 201
BsrI ACTGG 1 cut(s) 256
BssECI CCNNGG 2 cut(s) 150, 381
BssMI GATC 3 cut(s) 193, 202, 217
BssT1I CCWWGG 2 cut(s) 150, 381
Bst4CI ACNGT 2 cut(s) 141, 484
BstDEI CTNAG 2 cut(s) 67, 493
BstDSI CCRYGG 1 cut(s) 381
BstF5I GGATG 2 cut(s) 220, 444
BstKTI GATC 3 cut(s) 196, 205, 220
BstMBI GATC 3 cut(s) 193, 202, 217
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstNSI RCATGY 1 cut(s) 363
BstSLI GKGCMC 2 cut(s) 343, 508
BstV1I GCAGC 2 cut(s) 106, 158
BstV2I GAAGAC 1 cut(s) 266
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
BsuI GTATCC 1 cut(s) 195
BtgI CCRYGG 1 cut(s) 381
BtsCI GGATG 2 cut(s) 220, 444
CviAII CATG 4 cut(s) 242, 360, 382, 563
CviJI RGCY 9 cut(s) 10, 35, 119, 149, 155, 228, 311, 492, 569
CviKI_1 RGCY 9 cut(s) 10, 35, 119, 149, 155, 228, 311, 492, 569
DdeI CTNAG 2 cut(s) 67, 493
DpnI GATC 3 cut(s) 195, 204, 219
DpnII GATC 3 cut(s) 193, 202, 217
Eco130I CCWWGG 2 cut(s) 150, 381
Eco24I GRGCYC 1 cut(s) 571
Eco32I GATATC 1 cut(s) 316
Eco57I CTGAAG 2 cut(s) 57, 420
EcoRV GATATC 1 cut(s) 316
EcoT14I CCWWGG 2 cut(s) 150, 381
EcoT38I GRGCYC 1 cut(s) 571
ErhI CCWWGG 2 cut(s) 150, 381
FaeI CATG 4 cut(s) 245, 363, 385, 566
FatI CATG 4 cut(s) 241, 359, 381, 562
FauNDI CATATG 1 cut(s) 199
FbaI TGATCA 1 cut(s) 217
FblI GTMKAC 2 cut(s) 57, 441
Fnu4HI GCNGC 2 cut(s) 120, 147
FokI GGATG 2 cut(s) 227, 431
FriOI GRGCYC 1 cut(s) 571
Fsp4HI GCNGC 2 cut(s) 120, 147
FspBI CTAG 1 cut(s) 102
GluI GCNGC 2 cut(s) 120, 147
GsaI CCCAGC 2 cut(s) 311, 417
Hin1II CATG 4 cut(s) 245, 363, 385, 566
HincII GTYRAC 3 cut(s) 249, 442, 552
HindII GTYRAC 3 cut(s) 249, 442, 552
HindIII AAGCTT 1 cut(s) 226
HinfI GANTC 3 cut(s) 262, 301, 418
HpaI GTTAAC 1 cut(s) 552
HphI GGTGA 1 cut(s) 470
Hpy166II GTNNAC 6 cut(s) 58, 127, 249, 442, 506, 552
Hpy188I TCNGA 2 cut(s) 496, 581
Hpy188III TCNNGA 2 cut(s) 355, 374
Hpy8I GTNNAC 6 cut(s) 58, 127, 249, 442, 506, 552
HpyAV CCTTC 2 cut(s) 329, 444
HpyCH4III ACNGT 2 cut(s) 141, 484
HpyCH4V TGCA 3 cut(s) 233, 467, 506
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpyF3I CTNAG 2 cut(s) 67, 493
Hsp92II CATG 4 cut(s) 245, 363, 385, 566
Ksp22I TGATCA 1 cut(s) 217
KspAI GTTAAC 1 cut(s) 552
Kzo9I GATC 3 cut(s) 193, 202, 217
LmnI GCTCC 1 cut(s) 566
LpnPI CCDG 6 cut(s) 166, 237, 321, 399, 438, 461
Lsp1109I GCAGC 2 cut(s) 106, 158
LweI GCATC 1 cut(s) 143
MaeI CTAG 1 cut(s) 102
MaeIII GTNAC 3 cut(s) 43, 75, 362
MalI GATC 3 cut(s) 195, 204, 219
MboI GATC 3 cut(s) 193, 202, 217
MboII GAAGA 2 cut(s) 50, 271
MflI RGATCY 1 cut(s) 193
MhlI GDGCHC 3 cut(s) 343, 508, 571
MluCI AATT 2 cut(s) 280, 475
MlyI GAGTC 1 cut(s) 256
MmeI TCCRAC 1 cut(s) 171
MnlI CCTC 5 cut(s) 32, 64, 339, 413, 518
MseI TTAA 3 cut(s) 293, 453, 551
MspA1I CMGCKG 2 cut(s) 10, 311
MwoI GCNNNNNNNGC 1 cut(s) 152
NcoI CCATGG 1 cut(s) 381
NdeI CATATG 1 cut(s) 199
NdeII GATC 3 cut(s) 193, 202, 217
NlaIII CATG 4 cut(s) 245, 363, 385, 566
NlaIV GGNNCC 2 cut(s) 195, 568
NspI RCATGY 1 cut(s) 363
PciI ACATGT 1 cut(s) 359
PfeI GAWTC 2 cut(s) 301, 418
PkrI GCNGC 2 cut(s) 121, 148
PleI GAGTC 1 cut(s) 256
PpsI GAGTC 1 cut(s) 256
PscI ACATGT 1 cut(s) 359
PspFI CCCAGC 2 cut(s) 307, 413
PspN4I GGNNCC 2 cut(s) 195, 568
PsuI RGATCY 1 cut(s) 193
PvuII CAGCTG 2 cut(s) 10, 311
SalI GTCGAC 1 cut(s) 440
SaqAI TTAA 3 cut(s) 293, 453, 551
SatI GCNGC 2 cut(s) 120, 147
Sau3AI GATC 3 cut(s) 193, 202, 217
SchI GAGTC 1 cut(s) 256
SduI GDGCHC 3 cut(s) 343, 508, 571
SetI ASST 8 cut(s) 12, 37, 185, 230, 278, 313, 427, 494
SfaNI GCATC 1 cut(s) 143
Sse9I AATT 2 cut(s) 280, 475
SsiI CCGC 1 cut(s) 327
SspMI CTAG 1 cut(s) 102
StyI CCWWGG 2 cut(s) 150, 381
TaaI ACNGT 2 cut(s) 141, 484
TaqI TCGA 1 cut(s) 441
TasI AATT 2 cut(s) 280, 475
TfiI GAWTC 2 cut(s) 301, 418
Tru1I TTAA 3 cut(s) 293, 453, 551
Tru9I TTAA 3 cut(s) 293, 453, 551
TseI GCWGC 2 cut(s) 119, 146
TspDTI ATGAA 3 cut(s) 17, 108, 230
TspGWI ACGGA 1 cut(s) 177
VneI GTGCAC 1 cut(s) 504
XapI RAATTY 1 cut(s) 475
XceI RCATGY 1 cut(s) 363
XmiI GTMKAC 2 cut(s) 57, 441
XspI CTAG 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.