Rh7DG059100

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0019781
Physical Location & Seq
Reverse (-)
4513320 .. 4514913
1594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG059100.1

Sequence Viewer

Length: 414 bp
ATGGAGGTACAACTAATGGGACTACTAATTGAAGAGGCCGGCTTCATCATAGATGTGGCAAGTAGCAAATGCCTAAACGCCAACACAACAAATAGAGGGGCTCCTGTAATTACTTCAATTGAAGTTAGGACACTTCCCCAAGGAGATTACACAAGTGGCATAGAAGATTTCCCACATAATTCACTGAGGAAAAGTTATCGAATAGATTGTGGCAACACAAATGGATCCTTGAGGTATCCGTTGGATCCATATGATTGTATATGGGATGCTCATCAAAGCTTTGCACCATTTCATGTGTCAACTAGTTTGAAGACTCAACTTATTACCTACAATTTTTTGGGATTAAAGGAGAGTCTCCCAACTGATATCCTTAACCGCAAGAGTTTTGGCACAGAGGGATGTCTTGACATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_4 LRR_8 Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

137

Amino Acids

15.22

Weight (kDa)

5.04

Isoelectric Point (pI)

39.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 29 - 106 6.9e-11 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019781)

Species Orthologous Gene IDs
malus_domestica MD05G1130100.v1.1 MD05G1130200.v1.1
rosa_multiflora Rmu_sc0000258.1_g000017
rosa_roxburghii Rroxscaffold_7G00189760 Rroxscaffold_7G00190040
rosa_samantha Rh6BG231000 Rh7DG059100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 376
AclWI GGATC 4 cut(s) 219, 232, 239, 252
AfaI GTAC 1 cut(s) 9
AflIII ACRYGT 1 cut(s) 408
AgsI TTSAA 4 cut(s) 32, 117, 122, 310
AhlI ACTAGT 1 cut(s) 302
AluBI AGCT 1 cut(s) 279
AluI AGCT 1 cut(s) 279
Alw26I GTCTC 1 cut(s) 359
AlwI GGATC 4 cut(s) 219, 232, 239, 252
AoxI GGCC 1 cut(s) 36
BamHI GGATCC 2 cut(s) 224, 244
BanII GRGCYC 1 cut(s) 103
BbsI GAAGAC 1 cut(s) 317
BciVI GTATCC 1 cut(s) 246
BcoDI GTCTC 1 cut(s) 359
BcuI ACTAGT 1 cut(s) 302
BfaI CTAG 1 cut(s) 303
BfuI GTATCC 1 cut(s) 246
BmiI GGNNCC 3 cut(s) 102, 226, 246
BmsI GCATC 1 cut(s) 256
BpiI GAAGAC 1 cut(s) 317
BpuEI CTTGAG 1 cut(s) 250
BsaBI GATNNNNATC 1 cut(s) 270
BsaJI CCNNGG 1 cut(s) 139
Bse118I RCCGGY 1 cut(s) 38
Bse8I GATNNNNATC 1 cut(s) 270
BseDI CCNNGG 1 cut(s) 139
BseGI GGATG 2 cut(s) 271, 404
BseJI GATNNNNATC 1 cut(s) 270
BseMII CTCAG 1 cut(s) 176
BshFI GGCC 1 cut(s) 38
BsiSI CCGG 1 cut(s) 39
BslFI GGGAC 1 cut(s) 33
BsmAI GTCTC 1 cut(s) 359
BsmFI GGGAC 1 cut(s) 33
BsnI GGCC 1 cut(s) 38
Bsp1286I GDGCHC 1 cut(s) 103
Bsp143I GATC 2 cut(s) 224, 244
BspACI CCGC 1 cut(s) 376
BspANI GGCC 1 cut(s) 38
BspCNI CTCAG 1 cut(s) 177
BspLI GGNNCC 3 cut(s) 102, 226, 246
BspPI GGATC 4 cut(s) 219, 232, 239, 252
BsrFI RCCGGY 1 cut(s) 38
BssAI RCCGGY 1 cut(s) 38
BssECI CCNNGG 1 cut(s) 139
BssMI GATC 2 cut(s) 224, 244
BssT1I CCWWGG 1 cut(s) 139
Bst6I CTCTTC 1 cut(s) 27
BstC8I GCNNGC 1 cut(s) 40
BstDEI CTNAG 1 cut(s) 185
BstF5I GGATG 2 cut(s) 271, 404
BstKTI GATC 2 cut(s) 227, 247
BstMAI GTCTC 1 cut(s) 359
BstMBI GATC 2 cut(s) 224, 244
BstNSI RCATGY 1 cut(s) 412
BstV2I GAAGAC 1 cut(s) 317
BstX2I RGATCY 2 cut(s) 224, 244
BstYI RGATCY 2 cut(s) 224, 244
BsuI GTATCC 1 cut(s) 246
BsuRI GGCC 1 cut(s) 38
BtsCI GGATG 2 cut(s) 271, 404
BtsIMutI CAGTG 1 cut(s) 182
Cac8I GCNNGC 1 cut(s) 40
Cfr10I RCCGGY 1 cut(s) 38
Csp6I GTAC 1 cut(s) 8
CviAII CATG 2 cut(s) 293, 409
CviJI RGCY 4 cut(s) 38, 42, 101, 279
CviKI_1 RGCY 4 cut(s) 38, 42, 101, 279
CviQI GTAC 1 cut(s) 8
DdeI CTNAG 1 cut(s) 185
DpnI GATC 2 cut(s) 226, 246
DpnII GATC 2 cut(s) 224, 244
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
Eco130I CCWWGG 1 cut(s) 139
Eco24I GRGCYC 1 cut(s) 103
Eco32I GATATC 1 cut(s) 367
EcoRV GATATC 1 cut(s) 367
EcoT14I CCWWGG 1 cut(s) 139
EcoT38I GRGCYC 1 cut(s) 103
ErhI CCWWGG 1 cut(s) 139
FaeI CATG 2 cut(s) 296, 412
FaiI YATR 9 cut(s) 50, 161, 177, 250, 252, 260, 262, 294, 410
FaqI GGGAC 1 cut(s) 33
FatI CATG 2 cut(s) 292, 408
FauNDI CATATG 1 cut(s) 250
FokI GGATG 1 cut(s) 278
FriOI GRGCYC 1 cut(s) 103
FspBI CTAG 1 cut(s) 303
HaeIII GGCC 1 cut(s) 38
HapII CCGG 1 cut(s) 39
Hin1II CATG 2 cut(s) 296, 412
HincII GTYRAC 1 cut(s) 300
HindII GTYRAC 1 cut(s) 300
HindIII AAGCTT 1 cut(s) 277
HinfI GANTC 2 cut(s) 313, 352
HpaII CCGG 1 cut(s) 39
Hpy166II GTNNAC 1 cut(s) 300
Hpy188III TCNNGA 1 cut(s) 404
Hpy8I GTNNAC 1 cut(s) 300
HpyCH4V TGCA 1 cut(s) 284
HpyF3I CTNAG 1 cut(s) 185
Hsp92II CATG 2 cut(s) 296, 412
KroI GCCGGC 1 cut(s) 38
KroNI GCCGGC 1 cut(s) 40
Kzo9I GATC 2 cut(s) 224, 244
LmnI GCTCC 1 cut(s) 106
LpnPI CCDG 2 cut(s) 52, 117
LweI GCATC 1 cut(s) 256
MaeI CTAG 1 cut(s) 303
MalI GATC 2 cut(s) 226, 246
MboI GATC 2 cut(s) 224, 244
MboII GAAGA 3 cut(s) 44, 176, 322
MfeI CAATTG 1 cut(s) 117
MflI RGATCY 2 cut(s) 224, 244
MhlI GDGCHC 1 cut(s) 103
MluCI AATT 5 cut(s) 27, 108, 117, 178, 331
MlyI GAGTC 2 cut(s) 307, 361
MmeI TCCRAC 1 cut(s) 222
MnlI CCTC 5 cut(s) 28, 89, 180, 225, 388
MroNI GCCGGC 1 cut(s) 38
MseI TTAA 2 cut(s) 344, 372
MslI CAYNNNNRTG 1 cut(s) 53
MspI CCGG 1 cut(s) 39
MunI CAATTG 1 cut(s) 117
NaeI GCCGGC 1 cut(s) 40
NdeI CATATG 1 cut(s) 250
NdeII GATC 2 cut(s) 224, 244
NgoMIV GCCGGC 1 cut(s) 38
NlaIII CATG 2 cut(s) 296, 412
NlaIV GGNNCC 3 cut(s) 102, 226, 246
NspI RCATGY 1 cut(s) 412
PciI ACATGT 1 cut(s) 408
PdiI GCCGGC 1 cut(s) 40
PleI GAGTC 2 cut(s) 307, 360
PpsI GAGTC 2 cut(s) 307, 360
PscI ACATGT 1 cut(s) 408
PspN4I GGNNCC 3 cut(s) 102, 226, 246
PsuI RGATCY 2 cut(s) 224, 244
RsaI GTAC 1 cut(s) 9
RsaNI GTAC 1 cut(s) 8
RseI CAYNNNNRTG 1 cut(s) 53
SaqAI TTAA 2 cut(s) 344, 372
Sau3AI GATC 2 cut(s) 224, 244
SchI GAGTC 2 cut(s) 307, 361
SduI GDGCHC 1 cut(s) 103
SetI ASST 4 cut(s) 9, 236, 281, 329
SfaNI GCATC 1 cut(s) 256
SgeI CNNG 9 cut(s) 51, 72, 116, 152, 165, 241, 305, 315, 391
SmiMI CAYNNNNRTG 1 cut(s) 53
SmlI CTYRAG 1 cut(s) 229
SmoI CTYRAG 1 cut(s) 229
SpeI ACTAGT 1 cut(s) 302
Sse9I AATT 5 cut(s) 27, 108, 117, 178, 331
SsiI CCGC 1 cut(s) 376
SspMI CTAG 1 cut(s) 303
StyI CCWWGG 1 cut(s) 139
TaqI TCGA 1 cut(s) 199
TasI AATT 5 cut(s) 27, 108, 117, 178, 331
Tru1I TTAA 2 cut(s) 344, 372
Tru9I TTAA 2 cut(s) 344, 372
TscAI CASTG 1 cut(s) 189
TspDTI ATGAA 2 cut(s) 34, 281
TspGWI ACGGA 1 cut(s) 228
TspRI CASTG 1 cut(s) 189
XceI RCATGY 1 cut(s) 412
XspI CTAG 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.