Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0019781

Physical Location & Seq

Genomic Coordinates Reverse (-)

30038163 .. 30058425

Gene Structure 20263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00190040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGAAGGTAATCTCCAATGACCAAAAGAGATATATATCAACCATTGGACATATAATAACATCTCCTCAACCGCCCACAGCATATAATGATATAAAGATGAGAATCTGGAAGGTGATCGAGATGCGTAGAGTAGCCGCTCGTGTGATACTCGAATTTCGTTGTGAGGTGAAAGCTGAAGAAGTAACAAACAGAGTAGACAATCTCTTAGAGGAGTTACAAATGACAAGGAATGAAGTTTCTTGTTTGCGTGAAAAGGCTGCTGTTTACAACGCATCACAGTTGGCAGCCAAGGCAGTTTCTGTGGGAACTTCAAATATCAGGGTGCTAGTTGAATCTATGGATGATACTGATGCTGATTCACTAAAAAAAGCAGCTGAATATCTAATAGATACGCTACAAGATCCGGCAGCTGTAATTCTGGGCTCTTGTCCTGGTGATGAGAAGGTAAGTTTGGTTGCAGCATTCACTCCAGGGGTTGTGAAGTTGGGAATACAGGCAGGGAAGTTTATAGGGCCTATAGTTAAGCTGTGTGGCTGGGGAGGGGTGGAAGACCCAATTTTGCTCAGGCTGGTGGGAGGAAGCCTGAGAATTTGTCAGATGCACTTGAAAAAGCTCGATCTGAAATGTTCTTGCTTCTCTCTGAAAAGGCAAGCTGAAAGTCTTTCAAGTCAGCCTTGTATTTGTGTAGGGTTTCTCATGTTACTTTGCAAAGATCACAGAGTCTCCGAAGGAGTAGTGCAAACTGTTAGGGGTATGAAAACCCATTGTCCTGAGGATAATATTGTAGCTAGAAATATTACTGAGATTAGGGACCAGAGGGGTTATGAATATTTTTCTACTTTGGAGACCAAGAAATCTGACTTGAGTGCGAAGAAATCTTATTACATCGAGTTCAACCACCTGCTAACGGACATCATCAACTATTTTTTGCAAACTATTGCAGTAGCAATTGTAACCAAGTTAGCGTTAAACTATGACAACCTATTTTTGAACCCTGTACCCCAACATAGTGGTGATCTTACTAGGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000049 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004812 GO:0004813 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006412 GO:0006418 GO:0006419 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016020 GO:0016070 GO:0016597 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0031406 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0036094 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

DHHA1 tRNA-synt_2c tRNA_SAD

Protein Analysis

343

Amino Acids

38.24

Weight (kDa)

8.4

Isoelectric Point (pI)

42.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019781)

Species	Orthologous Gene IDs
malus_domestica	MD05G1130100.v1.1 MD05G1130200.v1.1
rosa_multiflora	Rmu_sc0000258.1_g000017
rosa_roxburghii	Rroxscaffold_7G00189760 Rroxscaffold_7G00190040
rosa_samantha	Rh6BG231000 Rh7DG059100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	909
Acc36I	ACCTGC	1 cut(s)	909
AccBSI	CCGCTC	1 cut(s)	137
AccI	GTMKAC	1 cut(s)	195
AciI	CCGC	2 cut(s)	71, 135
AclWI	GGATC	1 cut(s)	395
AcsI	RAATTY	2 cut(s)	152, 588
AcuI	CTGAAG	1 cut(s)	195
AfaI	GTAC	1 cut(s)	999
AfiI	CCNNNNNNNGG	1 cut(s)	907
AgsI	TTSAA	6 cut(s)	312, 332, 607, 666, 895, 991
AjnI	CCWGG	2 cut(s)	430, 469
AjuI	GAANNNNNNNTTGG	2 cut(s)	434, 466
AluBI	AGCT	7 cut(s)	173, 374, 410, 526, 613, 653, 788
AluI	AGCT	7 cut(s)	173, 374, 410, 526, 613, 653, 788
Alw26I	GTCTC	2 cut(s)	727, 839
AlwI	GGATC	1 cut(s)	395
AlwNI	CAGNNNCTG	1 cut(s)	299
AoxI	GGCC	1 cut(s)	512
ApeKI	GCWGC	5 cut(s)	257, 284, 371, 407, 458
ApoI	RAATTY	2 cut(s)	152, 588
AspS9I	GGNCC	2 cut(s)	512, 811
AsuHPI	GGTGA	4 cut(s)	124, 178, 446, 1025
AvaII	GGWCC	1 cut(s)	811
AxyI	CCTNAGG	1 cut(s)	771
BanII	GRGCYC	1 cut(s)	425
BauI	CACGAG	1 cut(s)	138
BbsI	GAAGAC	1 cut(s)	555
BbvI	GCAGC	5 cut(s)	244, 296, 383, 419, 470
BciT130I	CCWGG	2 cut(s)	432, 471
BcoDI	GTCTC	2 cut(s)	727, 839
BfaI	CTAG	3 cut(s)	326, 789, 1023
BfmI	CTRYAG	1 cut(s)	516
BfuAI	ACCTGC	1 cut(s)	909
BisI	GCNGC	6 cut(s)	135, 258, 285, 372, 408, 459
BlsI	GCNGC	6 cut(s)	136, 259, 286, 373, 409, 460
Bme1390I	CCNGG	2 cut(s)	432, 471
Bme18I	GGWCC	1 cut(s)	811
BmgT120I	GGNCC	2 cut(s)	512, 811
BmiI	GGNNCC	1 cut(s)	812
BmrFI	CCNGG	2 cut(s)	432, 471
BmsI	GCATC	4 cut(s)	111, 281, 340, 588
BpiI	GAAGAC	1 cut(s)	555
BpmI	CTGGAG	1 cut(s)	453
Bpu10I	CCTNAGC	1 cut(s)	563
BpuEI	CTTGAG	1 cut(s)	883
BsaBI	GATNNNNATC	2 cut(s)	34, 101
BsaI	GGTCTC	1 cut(s)	839
BsaJI	CCNNGG	2 cut(s)	288, 470
BsaXI	ACNNNNNCTCC	2 cut(s)	707, 737
Bsc4I	CCNNNNNNNGG	1 cut(s)	907
Bse21I	CCTNAGG	1 cut(s)	771
Bse8I	GATNNNNATC	2 cut(s)	34, 101
BseBI	CCWGG	2 cut(s)	432, 471
BseDI	CCNNGG	2 cut(s)	288, 470
BseGI	GGATG	1 cut(s)	346
BseJI	GATNNNNATC	2 cut(s)	34, 101
BseLI	CCNNNNNNNGG	1 cut(s)	907
BseMII	CTCAG	4 cut(s)	575, 577, 762, 792
BseRI	GAGGAG	2 cut(s)	54, 224
BseXI	GCAGC	5 cut(s)	244, 296, 383, 419, 470
BseYI	CCCAGC	1 cut(s)	534
BshFI	GGCC	1 cut(s)	514
BsiSI	CCGG	1 cut(s)	404
BslFI	GGGAC	1 cut(s)	824
BslI	CCNNNNNNNGG	1 cut(s)	907
BsmAI	GTCTC	2 cut(s)	727, 839
BsmFI	GGGAC	1 cut(s)	824
BsmI	GAATGC	1 cut(s)	461
BsnI	GGCC	1 cut(s)	514
Bso31I	GGTCTC	1 cut(s)	839
Bsp1286I	GDGCHC	1 cut(s)	425
Bsp143I	GATC	5 cut(s)	114, 400, 616, 712, 1015
BspACI	CCGC	2 cut(s)	71, 135
BspANI	GGCC	1 cut(s)	514
BspCNI	CTCAG	4 cut(s)	576, 576, 763, 793
BspLI	GGNNCC	1 cut(s)	812
BspMI	ACCTGC	1 cut(s)	909
BspPI	GGATC	1 cut(s)	395
BspTNI	GGTCTC	1 cut(s)	839
BsrBI	CCGCTC	1 cut(s)	137
BssECI	CCNNGG	2 cut(s)	288, 470
BssMI	GATC	5 cut(s)	114, 400, 616, 712, 1015
BssSI	CACGAG	1 cut(s)	138
BssT1I	CCWWGG	1 cut(s)	288
Bst2BI	CACGAG	1 cut(s)	138
Bst2UI	CCWGG	2 cut(s)	432, 471
Bst4CI	ACNGT	2 cut(s)	279, 745
BstC8I	GCNNGC	1 cut(s)	651
BstDEI	CTNAG	5 cut(s)	205, 563, 584, 771, 801
BstF5I	GGATG	1 cut(s)	346
BstKTI	GATC	5 cut(s)	117, 403, 619, 715, 1018
BstMAI	GTCTC	2 cut(s)	727, 839
BstMBI	GATC	5 cut(s)	114, 400, 616, 712, 1015
BstMWI	GCNNNNNNNGC	1 cut(s)	290
BstNI	CCWGG	2 cut(s)	432, 471
BstSCI	CCNGG	2 cut(s)	430, 469
BstSFI	CTRYAG	1 cut(s)	516
BstV1I	GCAGC	5 cut(s)	244, 296, 383, 419, 470
BstV2I	GAAGAC	1 cut(s)	555
BstX2I	RGATCY	1 cut(s)	400
BstXI	CCANNNNNNTGG	1 cut(s)	1010
BstYI	RGATCY	1 cut(s)	400
Bsu36I	CCTNAGG	1 cut(s)	771
BsuRI	GGCC	1 cut(s)	514
BtsCI	GGATG	1 cut(s)	346
BveI	ACCTGC	1 cut(s)	909
Cac8I	GCNNGC	1 cut(s)	651
CaiI	CAGNNNCTG	1 cut(s)	299
Cfr13I	GGNCC	2 cut(s)	512, 811
Csp6I	GTAC	1 cut(s)	998
CviAII	CATG	2 cut(s)	697, 1029
CviQI	GTAC	1 cut(s)	998
DdeI	CTNAG	5 cut(s)	205, 563, 584, 771, 801
DpnI	GATC	5 cut(s)	116, 402, 618, 714, 1017
DpnII	GATC	5 cut(s)	114, 400, 616, 712, 1015
Eco130I	CCWWGG	1 cut(s)	288
Eco24I	GRGCYC	1 cut(s)	425
Eco31I	GGTCTC	1 cut(s)	839
Eco47I	GGWCC	1 cut(s)	811
Eco57I	CTGAAG	1 cut(s)	195
Eco81I	CCTNAGG	1 cut(s)	771
EcoO109I	RGGNCCY	1 cut(s)	512
EcoRII	CCWGG	2 cut(s)	430, 469
EcoT14I	CCWWGG	1 cut(s)	288
EcoT38I	GRGCYC	1 cut(s)	425
ErhI	CCWWGG	1 cut(s)	288
FaeI	CATG	2 cut(s)	700, 1032
FalI	AAGNNNNNCTT	2 cut(s)	658, 690
FaqI	GGGAC	1 cut(s)	824
FatI	CATG	2 cut(s)	696, 1028
FblI	GTMKAC	1 cut(s)	195
Fnu4HI	GCNGC	6 cut(s)	135, 258, 285, 372, 408, 459
FokI	GGATG	1 cut(s)	353
FriOI	GRGCYC	1 cut(s)	425
Fsp4HI	GCNGC	6 cut(s)	135, 258, 285, 372, 408, 459
FspBI	CTAG	3 cut(s)	326, 789, 1023
GluI	GCNGC	6 cut(s)	135, 258, 285, 372, 408, 459
GsaI	CCCAGC	1 cut(s)	538
GsuI	CTGGAG	1 cut(s)	453
HaeIII	GGCC	1 cut(s)	514
HapII	CCGG	1 cut(s)	404
Hin1II	CATG	2 cut(s)	700, 1032
HinfI	GANTC	4 cut(s)	102, 332, 356, 720
HpaII	CCGG	1 cut(s)	404
HphI	GGTGA	4 cut(s)	124, 178, 446, 1025
Hpy166II	GTNNAC	2 cut(s)	196, 265
Hpy188I	TCNGA	5 cut(s)	597, 621, 642, 727, 859
Hpy188III	TCNNGA	3 cut(s)	106, 118, 770
Hpy8I	GTNNAC	2 cut(s)	196, 265
HpyAV	CCTTC	3 cut(s)	103, 436, 722
HpyCH4III	ACNGT	2 cut(s)	279, 745
HpyCH4V	TGCA	6 cut(s)	458, 601, 708, 739, 931, 941
HpyF10VI	GCNNNNNNNGC	1 cut(s)	290
HpyF3I	CTNAG	5 cut(s)	205, 563, 584, 771, 801
Hsp92II	CATG	2 cut(s)	700, 1032
Kzo9I	GATC	5 cut(s)	114, 400, 616, 712, 1015
Lsp1109I	GCAGC	5 cut(s)	244, 296, 383, 419, 470
LweI	GCATC	4 cut(s)	111, 281, 340, 588
MaeI	CTAG	3 cut(s)	326, 789, 1023
MaeIII	GTNAC	4 cut(s)	181, 213, 699, 952
MalI	GATC	5 cut(s)	116, 402, 618, 714, 1017
MbiI	CCGCTC	1 cut(s)	137
MboI	GATC	5 cut(s)	114, 400, 616, 712, 1015
MboII	GAAGA	3 cut(s)	188, 560, 883
MfeI	CAATTG	1 cut(s)	948
MflI	RGATCY	1 cut(s)	400
MhlI	GDGCHC	1 cut(s)	425
MluCI	AATT	5 cut(s)	152, 414, 555, 588, 948
MlyI	GAGTC	1 cut(s)	729
MnlI	CCTC	7 cut(s)	75, 157, 202, 533, 569, 766, 810
MseI	TTAA	2 cut(s)	522, 968
MslI	CAYNNNNRTG	1 cut(s)	1011
MspA1I	CMGCKG	2 cut(s)	374, 410
MspI	CCGG	1 cut(s)	404
MspR9I	CCNGG	2 cut(s)	432, 471
MunI	CAATTG	1 cut(s)	948
Mva1269I	GAATGC	1 cut(s)	461
MvaI	CCWGG	2 cut(s)	432, 471
MwoI	GCNNNNNNNGC	1 cut(s)	290
NdeII	GATC	5 cut(s)	114, 400, 616, 712, 1015
NlaIII	CATG	2 cut(s)	700, 1032
NlaIV	GGNNCC	1 cut(s)	812
PaqCI	CACCTGC	1 cut(s)	909
PctI	GAATGC	1 cut(s)	461
PfeI	GAWTC	3 cut(s)	102, 332, 356
PkrI	GCNGC	6 cut(s)	136, 259, 286, 373, 409, 460
PleI	GAGTC	1 cut(s)	728
PpsI	GAGTC	1 cut(s)	728
Psp6I	CCWGG	2 cut(s)	430, 469
PspFI	CCCAGC	1 cut(s)	534
PspGI	CCWGG	2 cut(s)	430, 469
PspN4I	GGNNCC	1 cut(s)	812
PspPI	GGNCC	2 cut(s)	512, 811
PstNI	CAGNNNCTG	1 cut(s)	299
PsuI	RGATCY	1 cut(s)	400
PvuII	CAGCTG	2 cut(s)	374, 410
RsaI	GTAC	1 cut(s)	999
RsaNI	GTAC	1 cut(s)	998
RseI	CAYNNNNRTG	1 cut(s)	1011
SaqAI	TTAA	2 cut(s)	522, 968
SatI	GCNGC	6 cut(s)	135, 258, 285, 372, 408, 459
Sau3AI	GATC	5 cut(s)	114, 400, 616, 712, 1015
Sau96I	GGNCC	2 cut(s)	512, 811
SchI	GAGTC	1 cut(s)	729
ScrFI	CCNGG	2 cut(s)	432, 471
SduI	GDGCHC	1 cut(s)	425
SfaNI	GCATC	4 cut(s)	111, 281, 340, 588
SfcI	CTRYAG	1 cut(s)	516
SinI	GGWCC	1 cut(s)	811
SmiMI	CAYNNNNRTG	1 cut(s)	1011
SmlI	CTYRAG	1 cut(s)	862
SmoI	CTYRAG	1 cut(s)	862
Sse9I	AATT	5 cut(s)	152, 414, 555, 588, 948
SsiI	CCGC	2 cut(s)	71, 135
SspI	AATATT	3 cut(s)	781, 796, 830
SspMI	CTAG	3 cut(s)	326, 789, 1023
StyD4I	CCNGG	2 cut(s)	430, 469
StyI	CCWWGG	1 cut(s)	288
TaaI	ACNGT	2 cut(s)	279, 745
TaqI	TCGA	4 cut(s)	117, 150, 615, 888
TasI	AATT	5 cut(s)	152, 414, 555, 588, 948
TauI	GCSGC	1 cut(s)	137
TfiI	GAWTC	3 cut(s)	102, 332, 356
Tru1I	TTAA	2 cut(s)	522, 968
Tru9I	TTAA	2 cut(s)	522, 968
TseI	GCWGC	5 cut(s)	257, 284, 371, 407, 458
TspDTI	ATGAA	4 cut(s)	17, 246, 770, 840
TspGWI	ACGGA	1 cut(s)	923
VpaK11BI	GGWCC	1 cut(s)	811
XapI	RAATTY	2 cut(s)	152, 588
XmiI	GTMKAC	1 cut(s)	195
XspI	CTAG	3 cut(s)	326, 789, 1023

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.