Rmu_sc0000362.1_g000011

protein catabolic process in the vacuole

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000362.1
OG0019282
Physical Location & Seq
Forward (+)
32916 .. 34693
1778 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1359 bp
atgcctaatggtagtttggataagtacctctacaaccaaccgaatgtgactcttaattggagtaagaggtttagagtcatcaaaggtgtggcttcagggttgttctatcttcatgaagaatgggaacaagtagtgattcacagagatgtgaaggccagtaatgtgctactagacaaggatttcaatggaagactaggagattttggacttgcaagattatgtgaccgtggaacagaccctcaaactactcatgtagctggcacacttgggtatatagccccagagcatgcaagaaccggccgtgccaccacgagcacagatgtgttttctttcggggcatttttgctcgaagttgtctgtggaagaaggccaatagagagacaaggaccagaggtcgatatctttttggttgatagggttttttcgtgttggaatagaggtaatattctagaggcaagagatcaaaaattgagtaatgactttgtagttggggaagtggaattggtgttgaaacttgcattattatgctcttgttcgcagcctgcaaccaggccaagcatgcgacaagtgatgcagtatttggagggtgatattgctatcccggagttgtcacttcttcagctctcttcgagtggtttagtatttgtgcctgatgaaggtcctgatgatgttgaaatggtgtatcagtgttcatatgttcccgagtcgactctcctctcaggtgggttgttctatcttcatgaagaatgggaacaagtagtgattcacagagatgtgaaggccagtaatgtgctactagacaaggatttcaatggaagactaggagattttggacttgcaagattatgtgaccgtggaacagaccctcaaactactcatgtagctggcacacttgggtatatagccccagagcatgcaagaaccggccgtgccacaacgagcacagatgtgttttctttcggggcatttttgctcgaagttgtctgtggaagaaggccaatagagagacaaggaccagaggtcgatatctttttggttgatagggttttttcgtgttggaatagaggtaatattctagaggcaagagatcaaaaattgagtaatgactttgtagttggggaagtggaattggtgttgaaacttgcattattatgctcttgttcgcagcctgcaaccaggccaagcatgcgacaagtgatgcagtatttggagggtgatattgctatcccggagttgtcacttcttcagctctcttcgagtggtttagtatttgtgcctgatgaaggtcctgatgatgttgaaatggcgtatcagtgttcatatgttcccgagtcgactctcctctcaggtggtcgctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0010033 GO:0014070 GO:0016020 GO:0042221 GO:0042493 GO:0044464 GO:0046677 GO:0050896 GO:0071944 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Vac_ImportDeg

Protein Analysis

452

Amino Acids

50.21

Weight (kDa)

4.91

Isoelectric Point (pI)

32.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 1 - 192 9.2e-27 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 1 - 193 7.1e-24 Protein tyrosine and serine/threonine kinase
PK_Tyr_Ser-Thr PF07714 240 - 402 6e-18 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 241 - 401 3.3e-24 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019282)

Species Orthologous Gene IDs
malus_domestica MD12G1146400.v1.1
rosa_chinensis RchiOBHm_Chr6g0253591 RchiOBHm_Chr7g0189641
rosa_multiflora Rmu_co7977474.1_g000001 Rmu_sc0000362.1_g000011 Rmu_sc0020980.1_g000001
rosa_samantha Rh3CG145200 Rh7DG107000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 707, 1334
AcoI YGGCCR 2 cut(s) 298, 925
AcuI CTGAAG 3 cut(s) 78, 602, 1229
AfaI GTAC 1 cut(s) 26
AfiI CCNNNNNNNGG 2 cut(s) 656, 1283
AgsI TTSAA 6 cut(s) 184, 511, 674, 811, 1138, 1301
AhdI GACNNNNNGTC 2 cut(s) 392, 1019
AjnI CCWGG 2 cut(s) 548, 1175
AleI CACNNNNGTG 2 cut(s) 320, 947
AluBI AGCT 4 cut(s) 257, 622, 884, 1249
AluI AGCT 4 cut(s) 257, 622, 884, 1249
Alw21I GWGCWC 2 cut(s) 317, 944
Alw26I GTCTC 2 cut(s) 373, 1000
Ama87I CYCGRG 2 cut(s) 701, 1328
AoxI GGCC 8 cut(s) 153, 298, 368, 551, 780, 925, 995, 1178
ApeKI GCWGC 2 cut(s) 538, 1165
AspS9I GGNCC 4 cut(s) 386, 659, 1013, 1286
AsuC2I CCSGG 2 cut(s) 602, 1229
AsuHPI GGTGA 2 cut(s) 599, 1226
AvaI CYCGRG 2 cut(s) 701, 1328
AvaII GGWCC 4 cut(s) 386, 659, 1013, 1286
BauI CACGAG 1 cut(s) 310
BbsI GAAGAC 2 cut(s) 196, 823
Bbv12I GWGCWC 2 cut(s) 317, 944
BbvI GCAGC 2 cut(s) 550, 1177
BceAI ACGGC 2 cut(s) 285, 912
BciT130I CCWGG 2 cut(s) 550, 1177
BcnI CCSGG 2 cut(s) 602, 1229
BcoDI GTCTC 2 cut(s) 373, 1000
BfaI CTAG 6 cut(s) 170, 194, 449, 797, 821, 1076
BisI GCNGC 2 cut(s) 539, 1166
BlsI GCNGC 2 cut(s) 540, 1167
Bme1390I CCNGG 4 cut(s) 550, 602, 1177, 1229
Bme18I GGWCC 4 cut(s) 386, 659, 1013, 1286
BmeRI GACNNNNNGTC 2 cut(s) 392, 1019
BmeT110I CYCGRG 2 cut(s) 701, 1328
BmgT120I GGNCC 4 cut(s) 386, 659, 1013, 1286
BmrFI CCNGG 4 cut(s) 550, 602, 1177, 1229
BmsI GCATC 2 cut(s) 561, 1188
BpiI GAAGAC 2 cut(s) 196, 823
BpuMI CCSGG 2 cut(s) 602, 1229
BsaJI CCNNGG 2 cut(s) 226, 853
Bsc4I CCNNNNNNNGG 2 cut(s) 656, 1283
Bse118I RCCGGY 2 cut(s) 296, 923
Bse1I ACTGG 2 cut(s) 156, 783
BseBI CCWGG 2 cut(s) 550, 1177
BseDI CCNNGG 2 cut(s) 226, 853
BseLI CCNNNNNNNGG 2 cut(s) 656, 1283
BseMII CTCAG 2 cut(s) 732, 1359
BseNI ACTGG 2 cut(s) 156, 783
BseRI GAGGAG 2 cut(s) 704, 1331
BseX3I CGGCCG 2 cut(s) 298, 925
BseXI GCAGC 2 cut(s) 550, 1177
Bsh1285I CGRYCG 2 cut(s) 301, 928
BshFI GGCC 8 cut(s) 155, 300, 370, 553, 782, 927, 997, 1180
BsiEI CGRYCG 2 cut(s) 301, 928
BsiHKAI GWGCWC 2 cut(s) 317, 944
BsiHKCI CYCGRG 2 cut(s) 701, 1328
BsiSI CCGG 4 cut(s) 297, 602, 924, 1229
BslI CCNNNNNNNGG 2 cut(s) 656, 1283
BsmAI GTCTC 2 cut(s) 373, 1000
BsnI GGCC 8 cut(s) 155, 300, 370, 553, 782, 927, 997, 1180
BsoBI CYCGRG 2 cut(s) 701, 1328
Bsp1286I GDGCHC 2 cut(s) 317, 944
Bsp143I GATC 2 cut(s) 460, 1087
BspANI GGCC 8 cut(s) 155, 300, 370, 553, 782, 927, 997, 1180
BspCNI CTCAG 2 cut(s) 731, 1358
BspHI TCATGA 2 cut(s) 112, 739
BsrFI RCCGGY 2 cut(s) 296, 923
BsrI ACTGG 2 cut(s) 156, 783
BssAI RCCGGY 2 cut(s) 296, 923
BssECI CCNNGG 2 cut(s) 226, 853
BssMI GATC 2 cut(s) 460, 1087
BssSI CACGAG 1 cut(s) 310
Bst2BI CACGAG 1 cut(s) 310
Bst2UI CCWGG 2 cut(s) 550, 1177
Bst4CI ACNGT 2 cut(s) 227, 854
Bst6I CTCTTC 2 cut(s) 631, 1258
BstC8I GCNNGC 8 cut(s) 259, 288, 543, 560, 886, 915, 1170, 1187
BstDEI CTNAG 2 cut(s) 718, 1345
BstDSI CCRYGG 2 cut(s) 226, 853
BstENI CCTNNNNNAGG 2 cut(s) 654, 1281
BstKTI GATC 2 cut(s) 463, 1090
BstMAI GTCTC 2 cut(s) 373, 1000
BstMBI GATC 2 cut(s) 460, 1087
BstMCI CGRYCG 2 cut(s) 301, 928
BstMWI GCNNNNNNNGC 2 cut(s) 559, 1186
BstNI CCWGG 2 cut(s) 550, 1177
BstNSI RCATGY 4 cut(s) 290, 562, 917, 1189
BstSCI CCNGG 4 cut(s) 548, 600, 1175, 1227
BstV1I GCAGC 2 cut(s) 550, 1177
BstV2I GAAGAC 2 cut(s) 196, 823
BstZI CGGCCG 2 cut(s) 298, 925
BsuRI GGCC 8 cut(s) 155, 300, 370, 553, 782, 927, 997, 1180
BtgI CCRYGG 2 cut(s) 226, 853
BtsIMutI CAGTG 2 cut(s) 692, 1319
Cac8I GCNNGC 8 cut(s) 259, 288, 543, 560, 886, 915, 1170, 1187
CciI TCATGA 2 cut(s) 112, 739
Cfr10I RCCGGY 2 cut(s) 296, 923
Cfr13I GGNCC 4 cut(s) 386, 659, 1013, 1286
Csp6I GTAC 1 cut(s) 25
CviAII CATG 8 cut(s) 113, 251, 287, 559, 740, 878, 914, 1186
CviQI GTAC 1 cut(s) 25
DdeI CTNAG 2 cut(s) 718, 1345
DpnI GATC 2 cut(s) 462, 1089
DpnII GATC 2 cut(s) 460, 1087
DriI GACNNNNNGTC 2 cut(s) 392, 1019
EaeI YGGCCR 2 cut(s) 298, 925
EagI CGGCCG 2 cut(s) 298, 925
Eam1104I CTCTTC 2 cut(s) 631, 1258
Eam1105I GACNNNNNGTC 2 cut(s) 392, 1019
EarI CTCTTC 2 cut(s) 631, 1258
EclXI CGGCCG 2 cut(s) 298, 925
Eco32I GATATC 2 cut(s) 400, 1027
Eco47I GGWCC 4 cut(s) 386, 659, 1013, 1286
Eco52I CGGCCG 2 cut(s) 298, 925
Eco57I CTGAAG 3 cut(s) 78, 602, 1229
Eco88I CYCGRG 2 cut(s) 701, 1328
EcoNI CCTNNNNNAGG 2 cut(s) 654, 1281
EcoO109I RGGNCCY 2 cut(s) 659, 1286
EcoRII CCWGG 2 cut(s) 548, 1175
EcoRV GATATC 2 cut(s) 400, 1027
FaeI CATG 8 cut(s) 116, 254, 290, 562, 743, 881, 917, 1189
FatI CATG 8 cut(s) 112, 250, 286, 558, 739, 877, 913, 1185
FauNDI CATATG 2 cut(s) 694, 1321
FblI GTMKAC 2 cut(s) 707, 1334
Fnu4HI GCNGC 2 cut(s) 539, 1166
Fsp4HI GCNGC 2 cut(s) 539, 1166
FspBI CTAG 6 cut(s) 170, 194, 449, 797, 821, 1076
GluI GCNGC 2 cut(s) 539, 1166
HaeIII GGCC 8 cut(s) 155, 300, 370, 553, 782, 927, 997, 1180
HapII CCGG 4 cut(s) 297, 602, 924, 1229
Hin1II CATG 8 cut(s) 116, 254, 290, 562, 743, 881, 917, 1189
HincII GTYRAC 2 cut(s) 708, 1335
HindII GTYRAC 2 cut(s) 708, 1335
HinfI GANTC 8 cut(s) 49, 75, 136, 704, 709, 763, 1331, 1336
HpaII CCGG 4 cut(s) 297, 602, 924, 1229
HphI GGTGA 2 cut(s) 599, 1226
Hpy166II GTNNAC 2 cut(s) 708, 1335
Hpy188III TCNNGA 8 cut(s) 113, 449, 662, 701, 740, 1076, 1289, 1328
Hpy8I GTNNAC 2 cut(s) 708, 1335
HpyAV CCTTC 6 cut(s) 145, 360, 650, 772, 987, 1277
HpyCH4III ACNGT 2 cut(s) 227, 854
HpyF10VI GCNNNNNNNGC 2 cut(s) 559, 1186
HpyF3I CTNAG 2 cut(s) 718, 1345
Hsp92II CATG 8 cut(s) 116, 254, 290, 562, 743, 881, 917, 1189
Kzo9I GATC 2 cut(s) 460, 1087
Lsp1109I GCAGC 2 cut(s) 550, 1177
LweI GCATC 2 cut(s) 561, 1188
MaeI CTAG 6 cut(s) 170, 194, 449, 797, 821, 1076
MaeIII GTNAC 5 cut(s) 46, 221, 609, 848, 1236
MalI GATC 2 cut(s) 462, 1089
MboI GATC 2 cut(s) 460, 1087
MhlI GDGCHC 2 cut(s) 317, 944
MluCI AATT 5 cut(s) 55, 467, 500, 1094, 1127
MlyI GAGTC 6 cut(s) 43, 84, 703, 713, 1330, 1340
MmeI TCCRAC 2 cut(s) 410, 1037
MseI TTAA 1 cut(s) 54
MslI CAYNNNNRTG 6 cut(s) 144, 320, 523, 771, 947, 1150
MspI CCGG 4 cut(s) 297, 602, 924, 1229
MspR9I CCNGG 4 cut(s) 550, 602, 1177, 1229
MvaI CCWGG 2 cut(s) 550, 1177
MwoI GCNNNNNNNGC 2 cut(s) 559, 1186
NciI CCSGG 2 cut(s) 602, 1229
NdeI CATATG 2 cut(s) 694, 1321
NdeII GATC 2 cut(s) 460, 1087
NlaIII CATG 8 cut(s) 116, 254, 290, 562, 743, 881, 917, 1189
NmuCI GTSAC 5 cut(s) 46, 221, 609, 848, 1236
NspI RCATGY 4 cut(s) 290, 562, 917, 1189
OliI CACNNNNGTG 2 cut(s) 320, 947
PaeI GCATGC 4 cut(s) 290, 562, 917, 1189
PagI TCATGA 2 cut(s) 112, 739
PfeI GAWTC 2 cut(s) 136, 763
PfoI TCCNGGA 2 cut(s) 600, 1227
PkrI GCNGC 2 cut(s) 540, 1167
PleI GAGTC 6 cut(s) 43, 83, 703, 712, 1330, 1339
PpsI GAGTC 6 cut(s) 43, 83, 703, 712, 1330, 1339
PpuMI RGGWCCY 2 cut(s) 659, 1286
Psp5II RGGWCCY 2 cut(s) 659, 1286
Psp6I CCWGG 2 cut(s) 548, 1175
PspGI CCWGG 2 cut(s) 548, 1175
PspPI GGNCC 4 cut(s) 386, 659, 1013, 1286
PspPPI RGGWCCY 2 cut(s) 659, 1286
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
RseI CAYNNNNRTG 6 cut(s) 144, 320, 523, 771, 947, 1150
SalI GTCGAC 2 cut(s) 706, 1333
SaqAI TTAA 1 cut(s) 54
SatI GCNGC 2 cut(s) 539, 1166
Sau3AI GATC 2 cut(s) 460, 1087
Sau96I GGNCC 4 cut(s) 386, 659, 1013, 1286
SchI GAGTC 6 cut(s) 43, 84, 703, 713, 1330, 1340
ScrFI CCNGG 4 cut(s) 550, 602, 1177, 1229
SduI GDGCHC 2 cut(s) 317, 944
SfaNI GCATC 2 cut(s) 561, 1188
SinI GGWCC 4 cut(s) 386, 659, 1013, 1286
SmiMI CAYNNNNRTG 6 cut(s) 144, 320, 523, 771, 947, 1150
SphI GCATGC 4 cut(s) 290, 562, 917, 1189
Sse9I AATT 5 cut(s) 55, 467, 500, 1094, 1127
SspI AATATT 2 cut(s) 445, 1072
SspMI CTAG 6 cut(s) 170, 194, 449, 797, 821, 1076
StyD4I CCNGG 4 cut(s) 548, 600, 1175, 1227
TaaI ACNGT 2 cut(s) 227, 854
TaqI TCGA 8 cut(s) 348, 396, 629, 707, 975, 1023, 1256, 1334
TasI AATT 5 cut(s) 55, 467, 500, 1094, 1127
TfiI GAWTC 2 cut(s) 136, 763
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
TscAI CASTG 2 cut(s) 692, 1319
TseFI GTSAC 5 cut(s) 46, 221, 609, 848, 1236
TseI GCWGC 2 cut(s) 538, 1165
Tsp45I GTSAC 5 cut(s) 46, 221, 609, 848, 1236
TspDTI ATGAA 8 cut(s) 101, 129, 669, 681, 728, 756, 1296, 1308
TspRI CASTG 2 cut(s) 692, 1319
VpaK11BI GGWCC 4 cut(s) 386, 659, 1013, 1286
XagI CCTNNNNNAGG 2 cut(s) 654, 1281
XbaI TCTAGA 2 cut(s) 448, 1075
XceI RCATGY 4 cut(s) 290, 562, 917, 1189
XmiI GTMKAC 2 cut(s) 707, 1334
XspI CTAG 6 cut(s) 170, 194, 449, 797, 821, 1076
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.