Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000363.1

Orthogroup ID

OG0019508

Physical Location & Seq

Genomic Coordinates Reverse (-)

23432 .. 24145

Gene Structure 714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ctggtccagctcggtttcggtggttggaaactctccactctagcggagcagcagccactggtgctcaagttcgataacagcgaccttctcaagggcaacatcaccgtcaatctattatggtatggtcactttaccccaatccagcactccataattgtagacttcatccagtccctcagttccccgcgtcgtgccccactccttccctcaacttcttcctggtggaaaaccaccgagaaatacaagatcagatcttccaccatcccctccaccagtccctacgacatcctttgcggcgtcccctacactgccctctacactgaacccagaagaccagaaaagccgtcgtggacgctgcaagaaaaagcccagaaatcgtcggagaatttcgacgtcgattctcgccccgtggtcaacggaagaccaaaacgattccagacggacgtcggcgacgtcgagatggctcgaacactaaaccatccccaaccccactggccgacgttcatcgtcttctccccagatctgatcatcttctctctaagtctcgatttcgagttcgaatcggagctccaaacagctgctccaccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002239 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0005911 GO:0008150 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0012505 GO:0016020 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phi_1

Protein Analysis

196

Amino Acids

22.3

Weight (kDa)

6.48

Isoelectric Point (pI)

59.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Phi_1	PF04674	22 - 85	8.6e-18	Phosphate-induced protein 1 conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019508)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000363.1_g000005 Rmu_sc0004045.1_g000011 Rmu_sc0005400.1_g000006 Rmu_sc0006415.1_g000003
rosa_rugosa	Rorug01G0377500 Rorug05G0155000
rosa_samantha	Rh1AG059100 Rh6AG156700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	3 cut(s)	396, 447, 456
AccI	GTMKAC	1 cut(s)	159
AccII	CGCG	1 cut(s)	187
AciI	CCGC	3 cut(s)	44, 185, 294
AcoI	YGGCCR	1 cut(s)	494
AcsI	RAATTY	1 cut(s)	385
AcyI	GRCGYC	4 cut(s)	297, 393, 444, 453
AfiI	CCNNNNNNNGG	1 cut(s)	91
AjnI	CCWGG	1 cut(s)	218
AluBI	AGCT	3 cut(s)	10, 568, 578
AluI	AGCT	3 cut(s)	10, 568, 578
Alw21I	GWGCWC	2 cut(s)	66, 570
Alw26I	GTCTC	1 cut(s)	548
AlwNI	CAGNNNCTG	1 cut(s)	58
AoxI	GGCC	1 cut(s)	494
ApeKI	GCWGC	4 cut(s)	49, 52, 355, 578
ApoI	RAATTY	1 cut(s)	385
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	94
AsuII	TTCGAA	1 cut(s)	558
AvaII	GGWCC	1 cut(s)	4
BaeGI	GKGCMC	1 cut(s)	196
BanII	GRGCYC	1 cut(s)	570
BbsI	GAAGAC	3 cut(s)	337, 427, 502
Bbv12I	GWGCWC	2 cut(s)	66, 570
BbvI	GCAGC	4 cut(s)	61, 64, 342, 565
BccI	CCATC	3 cut(s)	269, 454, 486
BceAI	ACGGC	1 cut(s)	328
BciT130I	CCWGG	1 cut(s)	220
BclI	TGATCA	1 cut(s)	525
BcoDI	GTCTC	1 cut(s)	548
BfaI	CTAG	1 cut(s)	41
BglII	AGATCT	2 cut(s)	251, 520
BisI	GCNGC	5 cut(s)	50, 53, 295, 356, 579
BlsI	GCNGC	5 cut(s)	51, 54, 296, 357, 580
Bme1390I	CCNGG	1 cut(s)	220
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmrFI	CCNGG	1 cut(s)	220
BoxI	GACNNNNGTC	1 cut(s)	443
BpiI	GAAGAC	3 cut(s)	337, 427, 502
Bpu14I	TTCGAA	1 cut(s)	558
BpuEI	CTTGAG	2 cut(s)	50, 74
BsaHI	GRCGYC	4 cut(s)	297, 393, 444, 453
BsaJI	CCNNGG	1 cut(s)	408
BsaXI	ACNNNNNCTCC	1 cut(s)	565
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
Bse1I	ACTGG	4 cut(s)	63, 169, 273, 497
BseBI	CCWGG	1 cut(s)	220
BseDI	CCNNGG	1 cut(s)	408
BseGI	GGATG	4 cut(s)	165, 261, 285, 478
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseMII	CTCAG	1 cut(s)	190
BseNI	ACTGG	4 cut(s)	63, 169, 273, 497
BseSI	GKGCMC	1 cut(s)	196
BseXI	GCAGC	4 cut(s)	61, 64, 342, 565
Bsh1236I	CGCG	1 cut(s)	187
BshFI	GGCC	1 cut(s)	496
BsiHKAI	GWGCWC	2 cut(s)	66, 570
BslFI	GGGAC	3 cut(s)	157, 261, 284
BslI	CCNNNNNNNGG	1 cut(s)	91
BsmAI	GTCTC	1 cut(s)	548
BsmFI	GGGAC	3 cut(s)	157, 261, 284
BsnI	GGCC	1 cut(s)	496
Bsp119I	TTCGAA	1 cut(s)	558
Bsp1286I	GDGCHC	3 cut(s)	66, 196, 570
Bsp143I	GATC	4 cut(s)	246, 251, 520, 525
BspACI	CCGC	3 cut(s)	44, 185, 294
BspANI	GGCC	1 cut(s)	496
BspCNI	CTCAG	1 cut(s)	189
BspFNI	CGCG	1 cut(s)	187
BspT104I	TTCGAA	1 cut(s)	558
BsrI	ACTGG	4 cut(s)	63, 169, 273, 497
BssECI	CCNNGG	1 cut(s)	408
BssMI	GATC	4 cut(s)	246, 251, 520, 525
BssNI	GRCGYC	4 cut(s)	297, 393, 444, 453
Bst2UI	CCWGG	1 cut(s)	220
Bst4CI	ACNGT	1 cut(s)	106
BstACI	GRCGYC	4 cut(s)	297, 393, 444, 453
BstBI	TTCGAA	1 cut(s)	558
BstDEI	CTNAG	2 cut(s)	176, 539
BstDSI	CCRYGG	1 cut(s)	408
BstENI	CCTNNNNNAGG	1 cut(s)	89
BstF5I	GGATG	4 cut(s)	165, 261, 285, 478
BstFNI	CGCG	1 cut(s)	187
BstKTI	GATC	4 cut(s)	249, 254, 523, 528
BstMAI	GTCTC	1 cut(s)	548
BstMBI	GATC	4 cut(s)	246, 251, 520, 525
BstMWI	GCNNNNNNNGC	1 cut(s)	61
BstNI	CCWGG	1 cut(s)	220
BstPAI	GACNNNNGTC	1 cut(s)	443
BstSCI	CCNGG	1 cut(s)	218
BstSLI	GKGCMC	1 cut(s)	196
BstUI	CGCG	1 cut(s)	187
BstV1I	GCAGC	4 cut(s)	61, 64, 342, 565
BstV2I	GAAGAC	3 cut(s)	337, 427, 502
BstX2I	RGATCY	2 cut(s)	251, 520
BstYI	RGATCY	2 cut(s)	251, 520
BsuRI	GGCC	1 cut(s)	496
BtgI	CCRYGG	1 cut(s)	408
BtsCI	GGATG	4 cut(s)	165, 261, 285, 478
BtsI	GCAGTG	1 cut(s)	306
BtsIMutI	CAGTG	4 cut(s)	56, 306, 318, 490
CaiI	CAGNNNCTG	1 cut(s)	58
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	3 cut(s)	176, 286, 361
CviJI	RGCY	8 cut(s)	10, 55, 343, 368, 464, 496, 568, 578
CviKI_1	RGCY	8 cut(s)	10, 55, 343, 368, 464, 496, 568, 578
DdeI	CTNAG	2 cut(s)	176, 539
DpnI	GATC	4 cut(s)	248, 253, 522, 527
DpnII	GATC	4 cut(s)	246, 251, 520, 525
EaeI	YGGCCR	1 cut(s)	494
Ecl136II	GAGCTC	1 cut(s)	568
Eco24I	GRGCYC	1 cut(s)	570
Eco47I	GGWCC	1 cut(s)	4
Eco53kI	GAGCTC	1 cut(s)	568
EcoICRI	GAGCTC	1 cut(s)	568
EcoNI	CCTNNNNNAGG	1 cut(s)	89
EcoRII	CCWGG	1 cut(s)	218
EcoT38I	GRGCYC	1 cut(s)	570
FaiI	YATR	4 cut(s)	118, 123, 152, 589
FaqI	GGGAC	3 cut(s)	157, 261, 284
FauI	CCCGC	1 cut(s)	192
FbaI	TGATCA	1 cut(s)	525
FblI	GTMKAC	1 cut(s)	159
Fnu4HI	GCNGC	5 cut(s)	50, 53, 295, 356, 579
FokI	GGATG	4 cut(s)	152, 248, 272, 465
FriOI	GRGCYC	1 cut(s)	570
Fsp4HI	GCNGC	5 cut(s)	50, 53, 295, 356, 579
FspBI	CTAG	1 cut(s)	41
GluI	GCNGC	5 cut(s)	50, 53, 295, 356, 579
HaeIII	GGCC	1 cut(s)	496
HgaI	GACGC	3 cut(s)	176, 286, 361
Hin1I	GRCGYC	4 cut(s)	297, 393, 444, 453
HincII	GTYRAC	1 cut(s)	415
HindII	GTYRAC	1 cut(s)	415
HinfI	GANTC	3 cut(s)	398, 432, 560
HphI	GGTGA	1 cut(s)	94
Hpy166II	GTNNAC	3 cut(s)	160, 351, 415
Hpy188I	TCNGA	4 cut(s)	251, 382, 525, 565
Hpy188III	TCNNGA	3 cut(s)	436, 457, 545
Hpy8I	GTNNAC	3 cut(s)	160, 351, 415
Hpy99I	CGWCG	9 cut(s)	192, 349, 382, 395, 398, 449, 455, 458, 502
HpyAV	CCTTC	2 cut(s)	95, 212
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4IV	ACGT	4 cut(s)	393, 444, 453, 500
HpyCH4V	TGCA	1 cut(s)	358
HpyF10VI	GCNNNNNNNGC	1 cut(s)	61
HpyF3I	CTNAG	2 cut(s)	176, 539
HpySE526I	ACGT	4 cut(s)	393, 444, 453, 500
Hsp92I	GRCGYC	4 cut(s)	297, 393, 444, 453
Ksp22I	TGATCA	1 cut(s)	525
Kzo9I	GATC	4 cut(s)	246, 251, 520, 525
LmnI	GCTCC	4 cut(s)	46, 565, 573, 586
Lsp1109I	GCAGC	4 cut(s)	61, 64, 342, 565
MaeI	CTAG	1 cut(s)	41
MaeII	ACGT	4 cut(s)	393, 444, 453, 500
MaeIII	GTNAC	1 cut(s)	125
MalI	GATC	4 cut(s)	248, 253, 522, 527
MboI	GATC	4 cut(s)	246, 251, 520, 525
MboII	GAAGA	6 cut(s)	207, 246, 342, 432, 502, 523
MflI	RGATCY	2 cut(s)	251, 520
MhlI	GDGCHC	3 cut(s)	66, 196, 570
MluCI	AATT	2 cut(s)	153, 385
MmeI	TCCRAC	2 cut(s)	5, 360
MnlI	CCTC	4 cut(s)	185, 217, 277, 323
MspA1I	CMGCKG	1 cut(s)	578
MspR9I	CCNGG	1 cut(s)	220
MvaI	CCWGG	1 cut(s)	220
MvnI	CGCG	1 cut(s)	187
MwoI	GCNNNNNNNGC	1 cut(s)	61
NdeII	GATC	4 cut(s)	246, 251, 520, 525
NmuCI	GTSAC	1 cut(s)	125
NspV	TTCGAA	1 cut(s)	558
PcsI	WCGNNNNNNNCGW	3 cut(s)	78, 450, 453
PfeI	GAWTC	3 cut(s)	398, 432, 560
PkrI	GCNGC	5 cut(s)	51, 54, 296, 357, 580
PshAI	GACNNNNGTC	1 cut(s)	443
Psp124BI	GAGCTC	1 cut(s)	570
Psp6I	CCWGG	1 cut(s)	218
PspGI	CCWGG	1 cut(s)	218
PspPI	GGNCC	1 cut(s)	4
PstNI	CAGNNNCTG	1 cut(s)	58
PsuI	RGATCY	2 cut(s)	251, 520
PvuII	CAGCTG	1 cut(s)	578
SacI	GAGCTC	1 cut(s)	570
SatI	GCNGC	5 cut(s)	50, 53, 295, 356, 579
Sau3AI	GATC	4 cut(s)	246, 251, 520, 525
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	220
SduI	GDGCHC	3 cut(s)	66, 196, 570
SetI	ASST	8 cut(s)	12, 87, 396, 447, 456, 503, 570, 580
SfuI	TTCGAA	1 cut(s)	558
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	2 cut(s)	65, 89
SmoI	CTYRAG	2 cut(s)	65, 89
Sse9I	AATT	2 cut(s)	153, 385
SsiI	CCGC	3 cut(s)	44, 185, 294
SspMI	CTAG	1 cut(s)	41
SstI	GAGCTC	1 cut(s)	570
StyD4I	CCNGG	1 cut(s)	218
TaaI	ACNGT	1 cut(s)	106
TaiI	ACGT	4 cut(s)	396, 447, 456, 503
TaqI	TCGA	8 cut(s)	72, 390, 396, 456, 466, 546, 552, 558
TasI	AATT	2 cut(s)	153, 385
TauI	GCSGC	1 cut(s)	297
TfiI	GAWTC	3 cut(s)	398, 432, 560
TscAI	CASTG	4 cut(s)	63, 313, 325, 497
TseFI	GTSAC	1 cut(s)	125
TseI	GCWGC	4 cut(s)	49, 52, 355, 578
Tsp45I	GTSAC	1 cut(s)	125
TspDTI	ATGAA	2 cut(s)	154, 493
TspGWI	ACGGA	2 cut(s)	432, 455
TspRI	CASTG	4 cut(s)	63, 313, 325, 497
VpaK11BI	GGWCC	1 cut(s)	4
XagI	CCTNNNNNAGG	1 cut(s)	89
XapI	RAATTY	1 cut(s)	385
XmiI	GTMKAC	1 cut(s)	159
XspI	CTAG	1 cut(s)	41
ZraI	GACGTC	3 cut(s)	394, 445, 454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.