Rh1AG059100

Phosphate-induced protein 1 conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0019508
Physical Location & Seq
Reverse (-)
9620475 .. 9658597
38123 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG059100.1

Sequence Viewer

Length: 606 bp
ATGAAATCCGGAACTCTAAAAAGTAGAAATTGGTCAATTTACCCCTTAATTCCTGCTGTTCGTCGCCGGAGCAACAGTTTTGCCGGTGTTCGCTGGAGATGGATCTCCCGTGAAGCCGATGGGGTGGCTTCCCTTGCCAATCTGAGGTTTAGGGTTGTCAATGTATTGTATGGTATATGTAGCCCATACAATAATGTTTTTTTTATCCGTATTGGAAAACTCGGTTTCGGTGGTCGGAAACTCTCCACTCTAGAGGAGCAGCAGCCACTGGTGCTCAAGTTCGATAACAGCGCCCTTCTTAAGGGCAACATCACCGTCAATCTATTATGGTATGGTCACTTTACCCCAATCCAGCGCTCCATAATTGTAGACTTCATCCAGTCCCTCAGTTCCCAGCGTCGTGCCCCACTCCTTCCCTCAACTTCTTCCTGGTGGAAACCCACCGAGAAATACAAGATCGGATCTTCCACTATCCCCTCCACCAGTCCCTACGACATCCTCTGCGGCGTCCCTTACACTGCCCTCTACACCGAACCCAGAAGACCAGAAAAGCTGTCGTGGACGGTGAACACCCAAAGCATCAATTCCATCAAAATTCAACTATAA

Protein Analysis

201

Amino Acids

22.88

Weight (kDa)

10.41

Isoelectric Point (pI)

56.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phi_1 PF04674 92 - 153 2e-17 Phosphate-induced protein 1 conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 369
AccIII TCCGGA 1 cut(s) 8
AciI CCGC 1 cut(s) 504
AclWI GGATC 2 cut(s) 110, 469
AcsI RAATTY 1 cut(s) 594
AcyI GRCGYC 1 cut(s) 507
AfeI AGCGCT 1 cut(s) 356
AfiI CCNNNNNNNGG 2 cut(s) 144, 301
AflII CTTAAG 1 cut(s) 299
AgsI TTSAA 1 cut(s) 599
AjnI CCWGG 1 cut(s) 428
AluBI AGCT 1 cut(s) 553
AluI AGCT 1 cut(s) 553
Alw21I GWGCWC 1 cut(s) 276
AlwI GGATC 2 cut(s) 110, 469
AlwNI CAGNNNCTG 1 cut(s) 268
Aor13HI TCCGGA 1 cut(s) 8
Aor51HI AGCGCT 1 cut(s) 356
ApeKI GCWGC 2 cut(s) 259, 262
ApoI RAATTY 1 cut(s) 594
AspLEI GCGC 2 cut(s) 293, 357
AsuHPI GGTGA 2 cut(s) 304, 577
BaeGI GKGCMC 1 cut(s) 406
BbsI GAAGAC 1 cut(s) 547
Bbv12I GWGCWC 1 cut(s) 276
BbvI GCAGC 2 cut(s) 271, 274
BccI CCATC 3 cut(s) 93, 113, 596
BciT130I CCWGG 1 cut(s) 430
BfaI CTAG 1 cut(s) 251
BfoI RGCGCY 2 cut(s) 294, 358
BfrI CTTAAG 1 cut(s) 299
BisI GCNGC 3 cut(s) 260, 263, 505
BlsI GCNGC 3 cut(s) 261, 264, 506
Bme1390I CCNGG 1 cut(s) 430
BmrFI CCNGG 1 cut(s) 430
BmsI GCATC 1 cut(s) 588
BpiI GAAGAC 1 cut(s) 547
BpmI CTGGAG 1 cut(s) 115
BpuEI CTTGAG 1 cut(s) 260
BsaHI GRCGYC 1 cut(s) 507
BsaWI WCCGGW 1 cut(s) 8
BsaXI ACNNNNNCTCC 2 cut(s) 61, 91
Bsc4I CCNNNNNNNGG 2 cut(s) 144, 301
Bse118I RCCGGY 1 cut(s) 83
Bse1I ACTGG 3 cut(s) 273, 379, 483
BseAI TCCGGA 1 cut(s) 8
BseBI CCWGG 1 cut(s) 430
BseGI GGATG 2 cut(s) 375, 495
BseLI CCNNNNNNNGG 2 cut(s) 144, 301
BseMII CTCAG 2 cut(s) 134, 400
BseNI ACTGG 3 cut(s) 273, 379, 483
BseRI GAGGAG 1 cut(s) 269
BseSI GKGCMC 1 cut(s) 406
BseXI GCAGC 2 cut(s) 271, 274
BseYI CCCAGC 1 cut(s) 393
BsiHKAI GWGCWC 1 cut(s) 276
BsiSI CCGG 3 cut(s) 9, 67, 84
BslFI GGGAC 3 cut(s) 367, 471, 494
BslI CCNNNNNNNGG 2 cut(s) 144, 301
BsmFI GGGAC 3 cut(s) 367, 471, 494
Bsp1286I GDGCHC 2 cut(s) 276, 406
Bsp13I TCCGGA 1 cut(s) 8
Bsp143I GATC 3 cut(s) 102, 456, 461
BspACI CCGC 1 cut(s) 504
BspCNI CTCAG 2 cut(s) 135, 399
BspEI TCCGGA 1 cut(s) 8
BspPI GGATC 2 cut(s) 110, 469
BspTI CTTAAG 1 cut(s) 299
BsrFI RCCGGY 1 cut(s) 83
BsrI ACTGG 3 cut(s) 273, 379, 483
BssAI RCCGGY 1 cut(s) 83
BssMI GATC 3 cut(s) 102, 456, 461
BssNI GRCGYC 1 cut(s) 507
Bst2UI CCWGG 1 cut(s) 430
Bst4CI ACNGT 3 cut(s) 77, 316, 565
BstACI GRCGYC 1 cut(s) 507
BstAFI CTTAAG 1 cut(s) 299
BstDEI CTNAG 2 cut(s) 143, 386
BstENI CCTNNNNNAGG 1 cut(s) 299
BstF5I GGATG 2 cut(s) 375, 495
BstH2I RGCGCY 2 cut(s) 294, 358
BstHHI GCGC 2 cut(s) 293, 357
BstKTI GATC 3 cut(s) 105, 459, 464
BstMBI GATC 3 cut(s) 102, 456, 461
BstMWI GCNNNNNNNGC 2 cut(s) 134, 271
BstNI CCWGG 1 cut(s) 430
BstSCI CCNGG 1 cut(s) 428
BstSLI GKGCMC 1 cut(s) 406
BstV1I GCAGC 2 cut(s) 271, 274
BstV2I GAAGAC 1 cut(s) 547
BstX2I RGATCY 2 cut(s) 102, 461
BstYI RGATCY 2 cut(s) 102, 461
BtsCI GGATG 2 cut(s) 375, 495
BtsI GCAGTG 1 cut(s) 516
BtsIMutI CAGTG 2 cut(s) 266, 516
CaiI CAGNNNCTG 1 cut(s) 268
CfoI GCGC 2 cut(s) 293, 357
Cfr10I RCCGGY 1 cut(s) 83
CseI GACGC 2 cut(s) 386, 496
CviJI RGCY 5 cut(s) 116, 128, 183, 265, 553
CviKI_1 RGCY 5 cut(s) 116, 128, 183, 265, 553
DdeI CTNAG 2 cut(s) 143, 386
DpnI GATC 3 cut(s) 104, 458, 463
DpnII GATC 3 cut(s) 102, 456, 461
Eco47III AGCGCT 1 cut(s) 356
EcoNI CCTNNNNNAGG 1 cut(s) 299
EcoRII CCWGG 1 cut(s) 428
FaiI YATR 8 cut(s) 171, 176, 178, 187, 328, 333, 362, 604
FaqI GGGAC 3 cut(s) 367, 471, 494
FblI GTMKAC 1 cut(s) 369
Fnu4HI GCNGC 3 cut(s) 260, 263, 505
FokI GGATG 2 cut(s) 362, 482
Fsp4HI GCNGC 3 cut(s) 260, 263, 505
FspBI CTAG 1 cut(s) 251
GlaI GCGC 2 cut(s) 292, 356
GluI GCNGC 3 cut(s) 260, 263, 505
GsaI CCCAGC 1 cut(s) 397
GsuI CTGGAG 1 cut(s) 115
HaeII RGCGCY 2 cut(s) 294, 358
HapII CCGG 3 cut(s) 9, 67, 84
HgaI GACGC 2 cut(s) 386, 496
HhaI GCGC 2 cut(s) 293, 357
Hin1I GRCGYC 1 cut(s) 507
Hin6I GCGC 2 cut(s) 291, 355
HinP1I GCGC 2 cut(s) 291, 355
HpaII CCGG 3 cut(s) 9, 67, 84
HphI GGTGA 2 cut(s) 304, 577
Hpy166II GTNNAC 3 cut(s) 370, 561, 568
Hpy188I TCNGA 3 cut(s) 144, 237, 461
Hpy188III TCNNGA 2 cut(s) 9, 251
Hpy8I GTNNAC 3 cut(s) 370, 561, 568
Hpy99I CGWCG 2 cut(s) 66, 402
HpyAV CCTTC 2 cut(s) 305, 422
HpyCH4III ACNGT 3 cut(s) 77, 316, 565
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 271
HpyF3I CTNAG 2 cut(s) 143, 386
Hsp92I GRCGYC 1 cut(s) 507
HspAI GCGC 2 cut(s) 291, 355
Kpn2I TCCGGA 1 cut(s) 8
Kzo9I GATC 3 cut(s) 102, 456, 461
LmnI GCTCC 3 cut(s) 69, 256, 362
Lsp1109I GCAGC 2 cut(s) 271, 274
LweI GCATC 1 cut(s) 588
MaeI CTAG 1 cut(s) 251
MaeIII GTNAC 1 cut(s) 335
MalI GATC 3 cut(s) 104, 458, 463
MboI GATC 3 cut(s) 102, 456, 461
MboII GAAGA 3 cut(s) 417, 456, 552
MflI RGATCY 2 cut(s) 102, 461
MhlI GDGCHC 2 cut(s) 276, 406
MluCI AATT 6 cut(s) 28, 36, 48, 363, 583, 594
MmeI TCCRAC 1 cut(s) 215
MnlI CCTC 7 cut(s) 138, 247, 395, 427, 487, 509, 533
MroI TCCGGA 1 cut(s) 8
MseI TTAA 2 cut(s) 47, 300
MspCI CTTAAG 1 cut(s) 299
MspI CCGG 3 cut(s) 9, 67, 84
MspR9I CCNGG 1 cut(s) 430
MvaI CCWGG 1 cut(s) 430
MwoI GCNNNNNNNGC 2 cut(s) 134, 271
NdeII GATC 3 cut(s) 102, 456, 461
NmuCI GTSAC 1 cut(s) 335
PkrI GCNGC 3 cut(s) 261, 264, 506
Psp6I CCWGG 1 cut(s) 428
PspFI CCCAGC 1 cut(s) 393
PspGI CCWGG 1 cut(s) 428
PstNI CAGNNNCTG 1 cut(s) 268
PsuI RGATCY 2 cut(s) 102, 461
SaqAI TTAA 2 cut(s) 47, 300
SatI GCNGC 3 cut(s) 260, 263, 505
Sau3AI GATC 3 cut(s) 102, 456, 461
ScrFI CCNGG 1 cut(s) 430
SduI GDGCHC 2 cut(s) 276, 406
SetI ASST 2 cut(s) 149, 555
SfaNI GCATC 1 cut(s) 588
SmlI CTYRAG 2 cut(s) 275, 299
SmoI CTYRAG 2 cut(s) 275, 299
Sse9I AATT 6 cut(s) 28, 36, 48, 363, 583, 594
SsiI CCGC 1 cut(s) 504
SspMI CTAG 1 cut(s) 251
StyD4I CCNGG 1 cut(s) 428
TaaI ACNGT 3 cut(s) 77, 316, 565
TaqI TCGA 1 cut(s) 282
TasI AATT 6 cut(s) 28, 36, 48, 363, 583, 594
TauI GCSGC 1 cut(s) 507
Tru1I TTAA 2 cut(s) 47, 300
Tru9I TTAA 2 cut(s) 47, 300
TscAI CASTG 2 cut(s) 273, 523
TseFI GTSAC 1 cut(s) 335
TseI GCWGC 2 cut(s) 259, 262
Tsp45I GTSAC 1 cut(s) 335
TspDTI ATGAA 2 cut(s) 17, 364
TspGWI ACGGA 1 cut(s) 197
TspRI CASTG 2 cut(s) 273, 523
Vha464I CTTAAG 1 cut(s) 299
XagI CCTNNNNNAGG 1 cut(s) 299
XapI RAATTY 1 cut(s) 594
XbaI TCTAGA 1 cut(s) 250
XmiI GTMKAC 1 cut(s) 369
XspI CTAG 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.