Rmu_sc0004045.1_g000011

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004045.1
OG0019508
Physical Location & Seq
Reverse (-)
45408 .. 46577
1170 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004045.1_g000011.1.cds

Sequence Viewer

Length: 459 bp
atggtatggtcactttaccctaatccagcgctccctaattgtagacttcatccagtcctcagttcccagcgtcgtgccgcactccttccctcaacttcttcctggtggaaaaccaccgagaaatacaagatcggatcttccaccgtcccctccaccagtcccagaaatacatgctctgctctaggacaaatctcagcttcgaaatcaaacccagaagaccataaaattaaacagcgacaagcgccagagctgcaagaaaaagtccagaaactgtcggagaatttcggcgtcgaccaaaacgatcagatggacatcggtgacgtcgaggtggctcaaacactaaaccatccccaaccccaccggctgacgttcatcgtcctctacccaaatctgatcatcttctctctaggcctcgatttcgagttcgaatcggagctccaaacagctgctccaccatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

17.03

Weight (kDa)

6.41

Isoelectric Point (pI)

50.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 324
AccI GTMKAC 2 cut(s) 43, 291
AciI CCGC 1 cut(s) 78
AclWI GGATC 1 cut(s) 142
AcsI RAATTY 1 cut(s) 280
AcyI GRCGYC 2 cut(s) 288, 321
AfeI AGCGCT 1 cut(s) 30
AjnI CCWGG 1 cut(s) 101
AluBI AGCT 4 cut(s) 197, 250, 436, 446
AluI AGCT 4 cut(s) 197, 250, 436, 446
Alw21I GWGCWC 1 cut(s) 438
AlwI GGATC 1 cut(s) 142
AlwNI CAGNNNCTG 1 cut(s) 271
Aor51HI AGCGCT 1 cut(s) 30
AoxI GGCC 1 cut(s) 409
ApeKI GCWGC 2 cut(s) 250, 446
ApoI RAATTY 1 cut(s) 280
AspLEI GCGC 2 cut(s) 31, 244
AsuHPI GGTGA 1 cut(s) 329
AsuII TTCGAA 2 cut(s) 200, 426
BanII GRGCYC 1 cut(s) 438
BbsI GAAGAC 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 438
BbvI GCAGC 2 cut(s) 237, 433
BccI CCATC 2 cut(s) 301, 354
BciT130I CCWGG 1 cut(s) 103
BclI TGATCA 1 cut(s) 393
BfaI CTAG 2 cut(s) 182, 407
BfoI RGCGCY 2 cut(s) 32, 245
BisI GCNGC 3 cut(s) 78, 251, 447
BlsI GCNGC 3 cut(s) 79, 252, 448
Bme1390I CCNGG 1 cut(s) 103
BmrFI CCNGG 1 cut(s) 103
BpiI GAAGAC 1 cut(s) 222
Bpu14I TTCGAA 2 cut(s) 200, 426
BsaBI GATNNNNATC 1 cut(s) 311
BsaHI GRCGYC 2 cut(s) 288, 321
BsaXI ACNNNNNCTCC 1 cut(s) 433
Bse118I RCCGGY 1 cut(s) 360
Bse1I ACTGG 2 cut(s) 53, 156
Bse8I GATNNNNATC 1 cut(s) 311
BseBI CCWGG 1 cut(s) 103
BseGI GGATG 2 cut(s) 49, 346
BseJI GATNNNNATC 1 cut(s) 311
BseMII CTCAG 2 cut(s) 73, 207
BseNI ACTGG 2 cut(s) 53, 156
BseXI GCAGC 2 cut(s) 237, 433
BseYI CCCAGC 1 cut(s) 66
BshFI GGCC 1 cut(s) 411
BsiHKAI GWGCWC 1 cut(s) 438
BsiSI CCGG 1 cut(s) 361
BslFI GGGAC 2 cut(s) 131, 144
BsmFI GGGAC 2 cut(s) 131, 144
BsnI GGCC 1 cut(s) 411
Bsp119I TTCGAA 2 cut(s) 200, 426
Bsp1286I GDGCHC 1 cut(s) 438
Bsp143I GATC 4 cut(s) 129, 134, 301, 393
BspACI CCGC 1 cut(s) 78
BspANI GGCC 1 cut(s) 411
BspCNI CTCAG 2 cut(s) 72, 206
BspPI GGATC 1 cut(s) 142
BspT104I TTCGAA 2 cut(s) 200, 426
BsrFI RCCGGY 1 cut(s) 360
BsrI ACTGG 2 cut(s) 53, 156
BssAI RCCGGY 1 cut(s) 360
BssMI GATC 4 cut(s) 129, 134, 301, 393
BssNI GRCGYC 2 cut(s) 288, 321
Bst2UI CCWGG 1 cut(s) 103
Bst4CI ACNGT 2 cut(s) 145, 273
BstACI GRCGYC 2 cut(s) 288, 321
BstBI TTCGAA 2 cut(s) 200, 426
BstDEI CTNAG 2 cut(s) 59, 193
BstF5I GGATG 2 cut(s) 49, 346
BstH2I RGCGCY 2 cut(s) 32, 245
BstHHI GCGC 2 cut(s) 31, 244
BstKTI GATC 4 cut(s) 132, 137, 304, 396
BstMBI GATC 4 cut(s) 129, 134, 301, 393
BstMWI GCNNNNNNNGC 2 cut(s) 241, 250
BstNI CCWGG 1 cut(s) 103
BstNSI RCATGY 1 cut(s) 174
BstSCI CCNGG 1 cut(s) 101
BstV1I GCAGC 2 cut(s) 237, 433
BstV2I GAAGAC 1 cut(s) 222
BstX2I RGATCY 1 cut(s) 134
BstYI RGATCY 1 cut(s) 134
BsuRI GGCC 1 cut(s) 411
BtsCI GGATG 2 cut(s) 49, 346
CaiI CAGNNNCTG 1 cut(s) 271
CfoI GCGC 2 cut(s) 31, 244
Cfr10I RCCGGY 1 cut(s) 360
CseI GACGC 2 cut(s) 59, 277
CviAII CATG 1 cut(s) 171
CviJI RGCY 7 cut(s) 197, 250, 332, 364, 411, 436, 446
CviKI_1 RGCY 7 cut(s) 197, 250, 332, 364, 411, 436, 446
DdeI CTNAG 2 cut(s) 59, 193
DpnI GATC 4 cut(s) 131, 136, 303, 395
DpnII GATC 4 cut(s) 129, 134, 301, 393
Ecl136II GAGCTC 1 cut(s) 436
Eco147I AGGCCT 1 cut(s) 411
Eco24I GRGCYC 1 cut(s) 438
Eco47III AGCGCT 1 cut(s) 30
Eco53kI GAGCTC 1 cut(s) 436
EcoICRI GAGCTC 1 cut(s) 436
EcoRII CCWGG 1 cut(s) 101
EcoT38I GRGCYC 1 cut(s) 438
FaeI CATG 1 cut(s) 174
FaiI YATR 4 cut(s) 7, 172, 222, 457
FaqI GGGAC 2 cut(s) 131, 144
FatI CATG 1 cut(s) 170
FbaI TGATCA 1 cut(s) 393
FblI GTMKAC 2 cut(s) 43, 291
Fnu4HI GCNGC 3 cut(s) 78, 251, 447
FokI GGATG 2 cut(s) 36, 333
FriOI GRGCYC 1 cut(s) 438
Fsp4HI GCNGC 3 cut(s) 78, 251, 447
FspBI CTAG 2 cut(s) 182, 407
GlaI GCGC 2 cut(s) 30, 243
GluI GCNGC 3 cut(s) 78, 251, 447
GsaI CCCAGC 1 cut(s) 70
HaeII RGCGCY 2 cut(s) 32, 245
HaeIII GGCC 1 cut(s) 411
HapII CCGG 1 cut(s) 361
HgaI GACGC 2 cut(s) 59, 277
HhaI GCGC 2 cut(s) 31, 244
Hin1I GRCGYC 2 cut(s) 288, 321
Hin1II CATG 1 cut(s) 174
Hin6I GCGC 2 cut(s) 29, 242
HinP1I GCGC 2 cut(s) 29, 242
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HinfI GANTC 1 cut(s) 428
HpaII CCGG 1 cut(s) 361
HphI GGTGA 1 cut(s) 329
Hpy166II GTNNAC 2 cut(s) 44, 292
Hpy188I TCNGA 5 cut(s) 134, 277, 306, 393, 433
Hpy188III TCNNGA 1 cut(s) 265
Hpy8I GTNNAC 2 cut(s) 44, 292
Hpy99I CGWCG 3 cut(s) 75, 293, 326
HpyAV CCTTC 1 cut(s) 95
HpyCH4III ACNGT 2 cut(s) 145, 273
HpyCH4IV ACGT 2 cut(s) 321, 368
HpyCH4V TGCA 1 cut(s) 253
HpyF10VI GCNNNNNNNGC 2 cut(s) 241, 250
HpyF3I CTNAG 2 cut(s) 59, 193
HpySE526I ACGT 2 cut(s) 321, 368
Hsp92I GRCGYC 2 cut(s) 288, 321
Hsp92II CATG 1 cut(s) 174
HspAI GCGC 2 cut(s) 29, 242
Ksp22I TGATCA 1 cut(s) 393
Kzo9I GATC 4 cut(s) 129, 134, 301, 393
LmnI GCTCC 4 cut(s) 36, 433, 441, 454
Lsp1109I GCAGC 2 cut(s) 237, 433
MaeI CTAG 2 cut(s) 182, 407
MaeII ACGT 2 cut(s) 321, 368
MaeIII GTNAC 2 cut(s) 9, 317
MalI GATC 4 cut(s) 131, 136, 303, 395
MboI GATC 4 cut(s) 129, 134, 301, 393
MboII GAAGA 4 cut(s) 90, 129, 227, 391
MflI RGATCY 1 cut(s) 134
MhlI GDGCHC 1 cut(s) 438
MluCI AATT 3 cut(s) 37, 225, 280
MmeI TCCRAC 1 cut(s) 255
MnlI CCTC 6 cut(s) 68, 100, 160, 319, 389, 422
MseI TTAA 1 cut(s) 228
MspA1I CMGCKG 1 cut(s) 446
MspI CCGG 1 cut(s) 361
MspR9I CCNGG 1 cut(s) 103
MvaI CCWGG 1 cut(s) 103
MwoI GCNNNNNNNGC 2 cut(s) 241, 250
NdeII GATC 4 cut(s) 129, 134, 301, 393
NlaIII CATG 1 cut(s) 174
NmuCI GTSAC 2 cut(s) 9, 317
NspI RCATGY 1 cut(s) 174
NspV TTCGAA 2 cut(s) 200, 426
PceI AGGCCT 1 cut(s) 411
PcsI WCGNNNNNNNCGW 2 cut(s) 297, 321
PfeI GAWTC 1 cut(s) 428
PkrI GCNGC 3 cut(s) 79, 252, 448
Psp124BI GAGCTC 1 cut(s) 438
Psp6I CCWGG 1 cut(s) 101
PspFI CCCAGC 1 cut(s) 66
PspGI CCWGG 1 cut(s) 101
PstNI CAGNNNCTG 1 cut(s) 271
PsuI RGATCY 1 cut(s) 134
PvuII CAGCTG 1 cut(s) 446
SacI GAGCTC 1 cut(s) 438
SalI GTCGAC 1 cut(s) 290
SaqAI TTAA 1 cut(s) 228
SatI GCNGC 3 cut(s) 78, 251, 447
Sau3AI GATC 4 cut(s) 129, 134, 301, 393
ScrFI CCNGG 1 cut(s) 103
SduI GDGCHC 1 cut(s) 438
SetI ASST 7 cut(s) 199, 252, 324, 330, 371, 438, 448
SfuI TTCGAA 2 cut(s) 200, 426
Sse9I AATT 3 cut(s) 37, 225, 280
SseBI AGGCCT 1 cut(s) 411
SsiI CCGC 1 cut(s) 78
SspMI CTAG 2 cut(s) 182, 407
SstI GAGCTC 1 cut(s) 438
StuI AGGCCT 1 cut(s) 411
StyD4I CCNGG 1 cut(s) 101
TaaI ACNGT 2 cut(s) 145, 273
TaiI ACGT 2 cut(s) 324, 371
TaqI TCGA 6 cut(s) 200, 291, 324, 414, 420, 426
TasI AATT 3 cut(s) 37, 225, 280
TauI GCSGC 1 cut(s) 80
TfiI GAWTC 1 cut(s) 428
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TseFI GTSAC 2 cut(s) 9, 317
TseI GCWGC 2 cut(s) 250, 446
Tsp45I GTSAC 2 cut(s) 9, 317
TspDTI ATGAA 2 cut(s) 38, 361
XapI RAATTY 1 cut(s) 280
XceI RCATGY 1 cut(s) 174
XmiI GTMKAC 2 cut(s) 43, 291
XspI CTAG 2 cut(s) 182, 407
ZraI GACGTC 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.