SAD/SRA domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g24480 FvH4_2g24480 FvH4_7g03510 FvH4_7g26750 FvH4_7g26780 FvH4_7g26780 FvH4_7g26780 |
| pyrus_communis | pycom07g04430 |
| rosa_chinensis | RchiOBHm_Chr1g0325811 RchiOBHm_Chr1g0373401 RchiOBHm_Chr6g0292341 |
| rosa_laevigata | RLG00000012041 RLG00000026824 RLG00000030101 |
| rosa_multiflora | Rmu_sc0001354.1_g000005 Rmu_sc0017023.1_g000001 Rmu_sc0019006.1_g000003 |
| rosa_roxburghii | Rroxscaffold_4G00284230 Rroxscaffold_4G00324280 |
| rosa_rugosa | Rorug01G0055100 Rorug01G0055200 Rorug01G0377500 Rorug06G0225500 |
| rosa_samantha | Rh1AG071400 Rh1AG071500 Rh1AG386600 Rh1BG058400 Rh1BG350600 Rh1BG350700 Rh1BG350900 Rh1CG070900 Rh1CG363700 Rh1DG075600 Rh1DG075700 Rh1DG381400 Rh6AG338900 Rh6BG346000 Rh6CG353100 Rh6DG339000 |
| rosa_wichuraiana | Rw1G005820 Rw1G034860 Rw6G029500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 976 |
| AccII | CGCG | 1 cut(s) | 960 |
| AciI | CCGC | 4 cut(s) | 553, 976, 992, 1213 |
| AclWI | GGATC | 4 cut(s) | 296, 350, 477, 662 |
| AcoI | YGGCCR | 1 cut(s) | 273 |
| AcsI | RAATTY | 3 cut(s) | 69, 439, 568 |
| AcuI | CTGAAG | 1 cut(s) | 569 |
| AdeI | CACNNNGTG | 1 cut(s) | 782 |
| AfaI | GTAC | 4 cut(s) | 749, 881, 1101, 1172 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 118, 282 |
| AgsI | TTSAA | 8 cut(s) | 83, 313, 476, 487, 560, 574, 830, 1061 |
| AjnI | CCWGG | 4 cut(s) | 23, 275, 1079, 1242 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1143, 1175 |
| AluBI | AGCT | 9 cut(s) | 106, 190, 547, 754, 908, 913, 942, 1184, 1196 |
| AluI | AGCT | 9 cut(s) | 106, 190, 547, 754, 908, 913, 942, 1184, 1196 |
| Alw21I | GWGCWC | 1 cut(s) | 944 |
| AlwI | GGATC | 4 cut(s) | 296, 350, 477, 662 |
| Ama87I | CYCGRG | 2 cut(s) | 216, 281 |
| AoxI | GGCC | 1 cut(s) | 273 |
| ApeKI | GCWGC | 5 cut(s) | 785, 788, 925, 968, 1235 |
| ApoI | RAATTY | 3 cut(s) | 69, 439, 568 |
| AseI | ATTAAT | 1 cut(s) | 720 |
| AspS9I | GGNCC | 3 cut(s) | 109, 253, 512 |
| AsuC2I | CCSGG | 1 cut(s) | 231 |
| AsuHPI | GGTGA | 1 cut(s) | 245 |
| AvaI | CYCGRG | 2 cut(s) | 216, 281 |
| AvaII | GGWCC | 3 cut(s) | 109, 253, 512 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 598, 631 |
| BalI | TGGCCA | 1 cut(s) | 275 |
| BanII | GRGCYC | 1 cut(s) | 944 |
| BbsI | GAAGAC | 2 cut(s) | 1136, 1254 |
| Bbv12I | GWGCWC | 1 cut(s) | 944 |
| BbvI | GCAGC | 5 cut(s) | 772, 775, 912, 980, 1247 |
| BccI | CCATC | 7 cut(s) | 120, 363, 385, 406, 503, 739, 941 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 479, 513 |
| BciT130I | CCWGG | 4 cut(s) | 25, 277, 1081, 1244 |
| BciVI | GTATCC | 1 cut(s) | 626 |
| BclI | TGATCA | 1 cut(s) | 712 |
| BcnI | CCSGG | 1 cut(s) | 231 |
| BfaI | CTAG | 4 cut(s) | 39, 306, 726, 1190 |
| BfuI | GTATCC | 1 cut(s) | 626 |
| BglII | AGATCT | 2 cut(s) | 162, 629 |
| BisI | GCNGC | 6 cut(s) | 554, 786, 789, 926, 969, 1236 |
| BlpI | GCTNAGC | 1 cut(s) | 909 |
| BlsI | GCNGC | 6 cut(s) | 555, 787, 790, 927, 970, 1237 |
| Bme1390I | CCNGG | 5 cut(s) | 25, 231, 277, 1081, 1244 |
| Bme18I | GGWCC | 3 cut(s) | 109, 253, 512 |
| BmeT110I | CYCGRG | 2 cut(s) | 216, 281 |
| BmgT120I | GGNCC | 3 cut(s) | 109, 253, 512 |
| BmiI | GGNNCC | 2 cut(s) | 255, 1085 |
| BmrFI | CCNGG | 5 cut(s) | 25, 231, 277, 1081, 1244 |
| BmsI | GCATC | 2 cut(s) | 682, 751 |
| BpiI | GAAGAC | 2 cut(s) | 1136, 1254 |
| Bpu10I | CCTNAGC | 1 cut(s) | 793 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 909 |
| BpuEI | CTTGAG | 1 cut(s) | 545 |
| BpuMI | CCSGG | 1 cut(s) | 231 |
| BsaAI | YACGTR | 1 cut(s) | 610 |
| BsaBI | GATNNNNATC | 1 cut(s) | 711 |
| BsaJI | CCNNGG | 4 cut(s) | 23, 380, 504, 1242 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 572, 602 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 118, 282 |
| Bse3DI | GCAATG | 1 cut(s) | 993 |
| Bse8I | GATNNNNATC | 1 cut(s) | 711 |
| BseBI | CCWGG | 4 cut(s) | 25, 277, 1081, 1244 |
| BseDI | CCNNGG | 4 cut(s) | 23, 380, 504, 1242 |
| BseGI | GGATG | 4 cut(s) | 374, 459, 514, 766 |
| BseJI | GATNNNNATC | 1 cut(s) | 711 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 118, 282 |
| BseMI | GCAATG | 1 cut(s) | 993 |
| BseMII | CTCAG | 4 cut(s) | 119, 166, 180, 900 |
| BseRI | GAGGAG | 1 cut(s) | 593 |
| BseXI | GCAGC | 5 cut(s) | 772, 775, 912, 980, 1247 |
| BsgI | GTGCAG | 1 cut(s) | 785 |
| Bsh1236I | CGCG | 1 cut(s) | 960 |
| BshFI | GGCC | 1 cut(s) | 275 |
| BsiHKAI | GWGCWC | 1 cut(s) | 944 |
| BsiHKCI | CYCGRG | 2 cut(s) | 216, 281 |
| BsiSI | CCGG | 1 cut(s) | 231 |
| BslFI | GGGAC | 1 cut(s) | 239 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 118, 282 |
| BsmFI | GGGAC | 1 cut(s) | 239 |
| BsmI | GAATGC | 1 cut(s) | 122 |
| BsnI | GGCC | 1 cut(s) | 275 |
| BsoBI | CYCGRG | 2 cut(s) | 216, 281 |
| Bsp1286I | GDGCHC | 1 cut(s) | 944 |
| Bsp1407I | TGTACA | 1 cut(s) | 879 |
| Bsp143I | GATC | 9 cut(s) | 162, 301, 342, 469, 629, 654, 712, 961, 1186 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 909 |
| Bsp19I | CCATGG | 1 cut(s) | 380 |
| Bsp68I | TCGCGA | 1 cut(s) | 960 |
| BspACI | CCGC | 4 cut(s) | 553, 976, 992, 1213 |
| BspANI | GGCC | 1 cut(s) | 275 |
| BspCNI | CTCAG | 4 cut(s) | 120, 165, 179, 901 |
| BspFNI | CGCG | 1 cut(s) | 960 |
| BspLI | GGNNCC | 2 cut(s) | 255, 1085 |
| BspPI | GGATC | 4 cut(s) | 296, 350, 477, 662 |
| BsrBI | CCGCTC | 1 cut(s) | 976 |
| BsrDI | GCAATG | 1 cut(s) | 993 |
| BsrGI | TGTACA | 1 cut(s) | 879 |
| BssECI | CCNNGG | 4 cut(s) | 23, 380, 504, 1242 |
| BssMI | GATC | 9 cut(s) | 162, 301, 342, 469, 629, 654, 712, 961, 1186 |
| BssT1I | CCWWGG | 2 cut(s) | 380, 504 |
| Bst2UI | CCWGG | 4 cut(s) | 25, 277, 1081, 1244 |
| Bst4CI | ACNGT | 1 cut(s) | 884 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1019 |
| BstAUI | TGTACA | 1 cut(s) | 879 |
| BstBAI | YACGTR | 1 cut(s) | 610 |
| BstC8I | GCNNGC | 2 cut(s) | 327, 894 |
| BstDEI | CTNAG | 7 cut(s) | 102, 128, 152, 166, 793, 909, 914 |
| BstDSI | CCRYGG | 1 cut(s) | 380 |
| BstF5I | GGATG | 4 cut(s) | 374, 459, 514, 766 |
| BstFNI | CGCG | 1 cut(s) | 960 |
| BstKTI | GATC | 9 cut(s) | 165, 304, 345, 472, 632, 657, 715, 964, 1189 |
| BstMBI | GATC | 9 cut(s) | 162, 301, 342, 469, 629, 654, 712, 961, 1186 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 553, 794, 1019 |
| BstNI | CCWGG | 4 cut(s) | 25, 277, 1081, 1244 |
| BstNSI | RCATGY | 1 cut(s) | 329 |
| BstSCI | CCNGG | 5 cut(s) | 23, 229, 275, 1079, 1242 |
| BstSNI | TACGTA | 1 cut(s) | 610 |
| BstUI | CGCG | 1 cut(s) | 960 |
| BstV1I | GCAGC | 5 cut(s) | 772, 775, 912, 980, 1247 |
| BstV2I | GAAGAC | 2 cut(s) | 1136, 1254 |
| BstX2I | RGATCY | 3 cut(s) | 162, 469, 629 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 412 |
| BstYI | RGATCY | 3 cut(s) | 162, 469, 629 |
| BsuI | GTATCC | 1 cut(s) | 626 |
| BsuRI | GGCC | 1 cut(s) | 275 |
| BtgI | CCRYGG | 1 cut(s) | 380 |
| BtsCI | GGATG | 4 cut(s) | 374, 459, 514, 766 |
| BtsI | GCAGTG | 3 cut(s) | 66, 495, 797 |
| BtsIMutI | CAGTG | 3 cut(s) | 66, 495, 797 |
| BtuMI | TCGCGA | 1 cut(s) | 960 |
| Cac8I | GCNNGC | 2 cut(s) | 327, 894 |
| Cfr13I | GGNCC | 3 cut(s) | 109, 253, 512 |
| Csp6I | GTAC | 4 cut(s) | 748, 880, 1100, 1171 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 252, 287 |
| CviAII | CATG | 4 cut(s) | 200, 326, 381, 1088 |
| CviQI | GTAC | 4 cut(s) | 748, 880, 1100, 1171 |
| DdeI | CTNAG | 7 cut(s) | 102, 128, 152, 166, 793, 909, 914 |
| DpnI | GATC | 9 cut(s) | 164, 303, 344, 471, 631, 656, 714, 963, 1188 |
| DpnII | GATC | 9 cut(s) | 162, 301, 342, 469, 629, 654, 712, 961, 1186 |
| DraIII | CACNNNGTG | 1 cut(s) | 782 |
| EaeI | YGGCCR | 1 cut(s) | 273 |
| EciI | GGCGGA | 1 cut(s) | 1007 |
| Ecl136II | GAGCTC | 1 cut(s) | 942 |
| Eco105I | TACGTA | 1 cut(s) | 610 |
| Eco130I | CCWWGG | 2 cut(s) | 380, 504 |
| Eco24I | GRGCYC | 1 cut(s) | 944 |
| Eco47I | GGWCC | 3 cut(s) | 109, 253, 512 |
| Eco53kI | GAGCTC | 1 cut(s) | 942 |
| Eco57I | CTGAAG | 1 cut(s) | 569 |
| Eco88I | CYCGRG | 2 cut(s) | 216, 281 |
| EcoICRI | GAGCTC | 1 cut(s) | 942 |
| EcoRII | CCWGG | 4 cut(s) | 23, 275, 1079, 1242 |
| EcoT14I | CCWWGG | 2 cut(s) | 380, 504 |
| EcoT38I | GRGCYC | 1 cut(s) | 944 |
| ErhI | CCWWGG | 2 cut(s) | 380, 504 |
| FaeI | CATG | 4 cut(s) | 203, 329, 384, 1091 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1040, 1072 |
| FaqI | GGGAC | 1 cut(s) | 239 |
| FatI | CATG | 4 cut(s) | 199, 325, 380, 1087 |
| FbaI | TGATCA | 1 cut(s) | 712 |
| Fnu4HI | GCNGC | 6 cut(s) | 554, 786, 789, 926, 969, 1236 |
| FokI | GGATG | 4 cut(s) | 381, 466, 521, 773 |
| FriOI | GRGCYC | 1 cut(s) | 944 |
| Fsp4HI | GCNGC | 6 cut(s) | 554, 786, 789, 926, 969, 1236 |
| FspBI | CTAG | 4 cut(s) | 39, 306, 726, 1190 |
| GluI | GCNGC | 6 cut(s) | 554, 786, 789, 926, 969, 1236 |
| HaeIII | GGCC | 1 cut(s) | 275 |
| HapII | CCGG | 1 cut(s) | 231 |
| Hin1II | CATG | 4 cut(s) | 203, 329, 384, 1091 |
| HincII | GTYRAC | 1 cut(s) | 358 |
| HindII | GTYRAC | 1 cut(s) | 358 |
| HindIII | AAGCTT | 2 cut(s) | 188, 1194 |
| HinfI | GANTC | 3 cut(s) | 170, 581, 707 |
| HpaII | CCGG | 1 cut(s) | 231 |
| HphI | GGTGA | 1 cut(s) | 245 |
| Hpy166II | GTNNAC | 2 cut(s) | 358, 639 |
| Hpy188I | TCNGA | 8 cut(s) | 155, 169, 301, 469, 534, 691, 712, 1202 |
| Hpy188III | TCNNGA | 6 cut(s) | 127, 283, 473, 937, 959, 1190 |
| Hpy8I | GTNNAC | 2 cut(s) | 358, 639 |
| HpyAV | CCTTC | 4 cut(s) | 36, 307, 973, 1212 |
| HpyCH4III | ACNGT | 1 cut(s) | 884 |
| HpyCH4IV | ACGT | 1 cut(s) | 609 |
| HpyCH4V | TGCA | 9 cut(s) | 89, 437, 695, 802, 809, 896, 968, 1118, 1168 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 553, 794, 1019 |
| HpyF3I | CTNAG | 7 cut(s) | 102, 128, 152, 166, 793, 909, 914 |
| HpySE526I | ACGT | 1 cut(s) | 609 |
| Hsp92II | CATG | 4 cut(s) | 203, 329, 384, 1091 |
| Ksp22I | TGATCA | 1 cut(s) | 712 |
| Kzo9I | GATC | 9 cut(s) | 162, 301, 342, 469, 629, 654, 712, 961, 1186 |
| LmnI | GCTCC | 2 cut(s) | 769, 1083 |
| Lsp1109I | GCAGC | 5 cut(s) | 772, 775, 912, 980, 1247 |
| LweI | GCATC | 2 cut(s) | 682, 751 |
| MaeI | CTAG | 4 cut(s) | 39, 306, 726, 1190 |
| MaeII | ACGT | 1 cut(s) | 609 |
| MaeIII | GTNAC | 1 cut(s) | 195 |
| MalI | GATC | 9 cut(s) | 164, 303, 344, 471, 631, 656, 714, 963, 1188 |
| MbiI | CCGCTC | 1 cut(s) | 976 |
| MboI | GATC | 9 cut(s) | 162, 301, 342, 469, 629, 654, 712, 961, 1186 |
| MboII | GAAGA | 5 cut(s) | 298, 400, 1045, 1141, 1259 |
| MflI | RGATCY | 3 cut(s) | 162, 469, 629 |
| MhlI | GDGCHC | 1 cut(s) | 944 |
| MlsI | TGGCCA | 1 cut(s) | 275 |
| MluNI | TGGCCA | 1 cut(s) | 275 |
| MlyI | GAGTC | 1 cut(s) | 590 |
| MmeI | TCCRAC | 3 cut(s) | 46, 632, 738 |
| Mox20I | TGGCCA | 1 cut(s) | 275 |
| MscI | TGGCCA | 1 cut(s) | 275 |
| MseI | TTAA | 3 cut(s) | 224, 428, 720 |
| MslI | CAYNNNNRTG | 1 cut(s) | 204 |
| Msp20I | TGGCCA | 1 cut(s) | 275 |
| MspI | CCGG | 1 cut(s) | 231 |
| MspR9I | CCNGG | 5 cut(s) | 25, 231, 277, 1081, 1244 |
| Mva1269I | GAATGC | 1 cut(s) | 122 |
| MvaI | CCWGG | 4 cut(s) | 25, 277, 1081, 1244 |
| MvnI | CGCG | 1 cut(s) | 960 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 553, 794, 1019 |
| NciI | CCSGG | 1 cut(s) | 231 |
| NcoI | CCATGG | 1 cut(s) | 380 |
| NdeII | GATC | 9 cut(s) | 162, 301, 342, 469, 629, 654, 712, 961, 1186 |
| NlaIII | CATG | 4 cut(s) | 203, 329, 384, 1091 |
| NlaIV | GGNNCC | 2 cut(s) | 255, 1085 |
| NmuCI | GTSAC | 1 cut(s) | 195 |
| NruI | TCGCGA | 1 cut(s) | 960 |
| NspI | RCATGY | 1 cut(s) | 329 |
| PaeI | GCATGC | 1 cut(s) | 329 |
| PaeR7I | CTCGAG | 1 cut(s) | 216 |
| PctI | GAATGC | 1 cut(s) | 122 |
| PfeI | GAWTC | 2 cut(s) | 170, 707 |
| PfoI | TCCNGGA | 1 cut(s) | 1079 |
| PkrI | GCNGC | 6 cut(s) | 555, 787, 790, 927, 970, 1237 |
| PleI | GAGTC | 1 cut(s) | 589 |
| PpsI | GAGTC | 1 cut(s) | 589 |
| Ppu21I | YACGTR | 1 cut(s) | 610 |
| PshBI | ATTAAT | 1 cut(s) | 720 |
| Psp124BI | GAGCTC | 1 cut(s) | 944 |
| Psp6I | CCWGG | 4 cut(s) | 23, 275, 1079, 1242 |
| PspGI | CCWGG | 4 cut(s) | 23, 275, 1079, 1242 |
| PspN4I | GGNNCC | 2 cut(s) | 255, 1085 |
| PspPI | GGNCC | 3 cut(s) | 109, 253, 512 |
| PspXI | VCTCGAGB | 1 cut(s) | 216 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 584, 616 |
| PsuI | RGATCY | 3 cut(s) | 162, 469, 629 |
| RruI | TCGCGA | 1 cut(s) | 960 |
| RsaI | GTAC | 4 cut(s) | 749, 881, 1101, 1172 |
| RsaNI | GTAC | 4 cut(s) | 748, 880, 1100, 1171 |
| RseI | CAYNNNNRTG | 1 cut(s) | 204 |
| SacI | GAGCTC | 1 cut(s) | 944 |
| SaqAI | TTAA | 3 cut(s) | 224, 428, 720 |
| SatI | GCNGC | 6 cut(s) | 554, 786, 789, 926, 969, 1236 |
| Sau3AI | GATC | 9 cut(s) | 162, 301, 342, 469, 629, 654, 712, 961, 1186 |
| Sau96I | GGNCC | 3 cut(s) | 109, 253, 512 |
| SchI | GAGTC | 1 cut(s) | 590 |
| ScrFI | CCNGG | 5 cut(s) | 25, 231, 277, 1081, 1244 |
| SduI | GDGCHC | 1 cut(s) | 944 |
| SfaNI | GCATC | 2 cut(s) | 682, 751 |
| Sfr274I | CTCGAG | 1 cut(s) | 216 |
| SinI | GGWCC | 3 cut(s) | 109, 253, 512 |
| SlaI | CTCGAG | 1 cut(s) | 216 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 204 |
| SmlI | CTYRAG | 2 cut(s) | 216, 524 |
| SmoI | CTYRAG | 2 cut(s) | 216, 524 |
| SnaBI | TACGTA | 1 cut(s) | 610 |
| SphI | GCATGC | 1 cut(s) | 329 |
| SsiI | CCGC | 4 cut(s) | 553, 976, 992, 1213 |
| SspI | AATATT | 2 cut(s) | 814, 999 |
| SspMI | CTAG | 4 cut(s) | 39, 306, 726, 1190 |
| SstI | GAGCTC | 1 cut(s) | 944 |
| StyD4I | CCNGG | 5 cut(s) | 23, 229, 275, 1079, 1242 |
| StyI | CCWWGG | 2 cut(s) | 380, 504 |
| TaaI | ACNGT | 1 cut(s) | 884 |
| TaiI | ACGT | 1 cut(s) | 612 |
| TaqI | TCGA | 2 cut(s) | 217, 944 |
| TatI | WGTACW | 3 cut(s) | 747, 879, 1170 |
| TauI | GCSGC | 1 cut(s) | 556 |
| TfiI | GAWTC | 2 cut(s) | 170, 707 |
| Tru1I | TTAA | 3 cut(s) | 224, 428, 720 |
| Tru9I | TTAA | 3 cut(s) | 224, 428, 720 |
| TscAI | CASTG | 3 cut(s) | 66, 502, 804 |
| TseFI | GTSAC | 1 cut(s) | 195 |
| TseI | GCWGC | 5 cut(s) | 785, 788, 925, 968, 1235 |
| Tsp45I | GTSAC | 1 cut(s) | 195 |
| TspDTI | ATGAA | 3 cut(s) | 412, 470, 939 |
| TspRI | CASTG | 3 cut(s) | 66, 502, 804 |
| VpaK11BI | GGWCC | 3 cut(s) | 109, 253, 512 |
| VspI | ATTAAT | 1 cut(s) | 720 |
| XapI | RAATTY | 3 cut(s) | 69, 439, 568 |
| XbaI | TCTAGA | 1 cut(s) | 1189 |
| XceI | RCATGY | 1 cut(s) | 329 |
| XhoI | CTCGAG | 1 cut(s) | 216 |
| XspI | CTAG | 4 cut(s) | 39, 306, 726, 1190 |