Rh1AG386600

SAD/SRA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0002400
Physical Location & Seq
Reverse (-)
61701570 .. 61703948
2379 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG386600.1

Sequence Viewer

Length: 1119 bp
ATGGTTACTTTGAAAACACCTGAAAAAGAAAATGGGTTTCGTCCCAATTTTAAGAGGCCTAGAGTTTATACAGTTCGAGATTTCCCTGAAGGTTGTGGACGATTTGTGGCTCCAGTGCAGCCAAGTGAATGTGAAGAGGGTGATGAAGATATGAACACATTAGCAAGGAACAATTGCTCCCTGCCTAGTCCTCGAGTTGATCTTGATGTTGTTCGAGATTTTCCTAAAGGTTGTGGGCCGACGGTAGTTTCTTCTTTGAAAGATGCTGAAGAGAAGAGTTTGGTTCCAGACGTTAAAGAATGCGAGCAGCGTGTTGTTGGTCACAAGTTGAGTGTTGCAAGTGTGGTTGATAAAGCTCATAACAAGGCGAAGAAAGCTTTGGCTGCATATCAAGAAAAGAGTTTGGTTCCAGACGTCAAGGATAAAGAATGCGAGCAGCGTGTTGTTGGTCACAAGTTGAGTGTTGCAAGTGTGGTTGATAAAGCTCATAACAAGGTGAAGAAAGCTTTGGCTGCATATCAAGAGACTTTGAGTGAGATGGGTGGAGAATGCGATGCTAATTTCAACAGACTAAAGGGTTGGAAATTGTATGTTGAAGCAGCAATGTATCTTAAGAAGAGACATAAATGGGTTAACAACACAAAGAAACAAACAGGGGACATTCCAGGAGTGAAGGTTGGTGACAAGTTTCGGTATAGACCTGAATTAGCTATTGTTGGTCTTCATAGTCACTTTCAATGCGGTATTGATTATATGACACAGGACGGGGAAATGATTGCCACAAGTATTGTTGAATCTGGCCGCTATGCGAACGAGACAGAATCACCTGATGTCATGATATACACAGGTCAAGGTGGAAATCCAAAGGTTTCAAAAGGGGAACCAATAGATCAAAAGCCCGACCGTGGAAACCGTGCACTGATGAATAGCAAGGCAGCAGGAAATCCTGTGAGGGTAATCCGGAGCTATAAATTTCGGGAGGAATCTGGTTATGTTTATGATGGTCTCTACATTGTTGATGATTTTTGGCGAGAAAGAGGGGTTTATGGTAAATTTGTGTTTAGATTTTCGTTGAGGAGGATTTCGGGTCAACCAAAACTCACAGTTTGCAACAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 ko04211 map00310 map04211
Pfam Domains
Protein Families
Pre-SET SAD_SRA SET

Protein Analysis

372

Amino Acids

41.74

Weight (kDa)

9.06

Isoelectric Point (pI)

32.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAD_SRA PF02182 218 - 364 2e-47 SAD/SRA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 417
AccIII TCCGGA 1 cut(s) 960
AciI CCGC 2 cut(s) 741, 802
AcoI YGGCCR 1 cut(s) 799
AcsI RAATTY 2 cut(s) 971, 1052
AcuI CTGAAG 2 cut(s) 108, 288
AcyI GRCGYC 1 cut(s) 414
AfiI CCNNNNNNNGG 1 cut(s) 905
AflII CTTAAG 1 cut(s) 611
AgsI TTSAA 7 cut(s) 13, 259, 565, 596, 737, 794, 873
AjnI CCWGG 1 cut(s) 664
AjuI GAANNNNNNNTTGG 4 cut(s) 362, 394, 491, 523
AloI GAACNNNNNNTCC 2 cut(s) 161, 193
AluBI AGCT 6 cut(s) 356, 377, 485, 506, 710, 966
AluI AGCT 6 cut(s) 356, 377, 485, 506, 710, 966
Alw21I GWGCWC 1 cut(s) 919
Alw26I GTCTC 4 cut(s) 518, 613, 809, 1010
Alw44I GTGCAC 1 cut(s) 915
Ama87I CYCGRG 1 cut(s) 192
Aor13HI TCCGGA 1 cut(s) 960
AoxI GGCC 3 cut(s) 56, 236, 799
ApaLI GTGCAC 1 cut(s) 915
ApeKI GCWGC 7 cut(s) 118, 307, 383, 436, 512, 599, 935
ApoI RAATTY 2 cut(s) 971, 1052
AspS9I GGNCC 1 cut(s) 236
AsuHPI GGTGA 4 cut(s) 152, 508, 692, 816
AvaI CYCGRG 1 cut(s) 192
BaeGI GKGCMC 1 cut(s) 919
BbsI GAAGAC 1 cut(s) 713
Bbv12I GWGCWC 1 cut(s) 919
BbvI GCAGC 7 cut(s) 130, 319, 370, 448, 499, 611, 947
BccI CCATC 2 cut(s) 532, 995
BciT130I CCWGG 1 cut(s) 666
BcoDI GTCTC 4 cut(s) 518, 613, 809, 1010
BfaI CTAG 2 cut(s) 60, 186
BfrI CTTAAG 1 cut(s) 611
BisI GCNGC 8 cut(s) 119, 308, 384, 437, 513, 600, 802, 936
BlsI GCNGC 8 cut(s) 120, 309, 385, 438, 514, 601, 803, 937
Bme1390I CCNGG 1 cut(s) 666
BmeT110I CYCGRG 1 cut(s) 192
BmgT120I GGNCC 1 cut(s) 236
BmiI GGNNCC 4 cut(s) 111, 285, 408, 882
BmrFI CCNGG 1 cut(s) 666
BmsI GCATC 2 cut(s) 253, 544
BpiI GAAGAC 1 cut(s) 713
BpmI CTGGAG 1 cut(s) 96
BsaHI GRCGYC 1 cut(s) 414
BsaI GGTCTC 1 cut(s) 1010
BsaJI CCNNGG 1 cut(s) 904
BsaWI WCCGGW 1 cut(s) 960
BsaXI ACNNNNNCTCC 4 cut(s) 161, 191, 660, 690
Bsc4I CCNNNNNNNGG 1 cut(s) 905
Bse1I ACTGG 1 cut(s) 113
Bse3DI GCAATG 1 cut(s) 609
BseAI TCCGGA 1 cut(s) 960
BseBI CCWGG 1 cut(s) 666
BseDI CCNNGG 1 cut(s) 904
BseLI CCNNNNNNNGG 1 cut(s) 905
BseMI GCAATG 1 cut(s) 609
BseNI ACTGG 1 cut(s) 113
BseRI GAGGAG 1 cut(s) 1090
BseSI GKGCMC 1 cut(s) 919
BseXI GCAGC 7 cut(s) 130, 319, 370, 448, 499, 611, 947
BsgI GTGCAG 1 cut(s) 137
Bsh1285I CGRYCG 1 cut(s) 904
BshFI GGCC 3 cut(s) 58, 238, 801
BsiEI CGRYCG 1 cut(s) 904
BsiHKAI GWGCWC 1 cut(s) 919
BsiHKCI CYCGRG 1 cut(s) 192
BsiSI CCGG 1 cut(s) 961
BslFI GGGAC 2 cut(s) 27, 671
BslI CCNNNNNNNGG 1 cut(s) 905
BsmAI GTCTC 4 cut(s) 518, 613, 809, 1010
BsmFI GGGAC 2 cut(s) 27, 671
BsmI GAATGC 3 cut(s) 305, 434, 554
BsnI GGCC 3 cut(s) 58, 238, 801
Bso31I GGTCTC 1 cut(s) 1010
BsoBI CYCGRG 1 cut(s) 192
Bsp1286I GDGCHC 1 cut(s) 919
Bsp13I TCCGGA 1 cut(s) 960
Bsp143I GATC 2 cut(s) 199, 889
BspACI CCGC 2 cut(s) 741, 802
BspANI GGCC 3 cut(s) 58, 238, 801
BspEI TCCGGA 1 cut(s) 960
BspHI TCATGA 1 cut(s) 834
BspLI GGNNCC 4 cut(s) 111, 285, 408, 882
BspTI CTTAAG 1 cut(s) 611
BspTNI GGTCTC 1 cut(s) 1010
BsrDI GCAATG 1 cut(s) 609
BsrI ACTGG 1 cut(s) 113
BssECI CCNNGG 1 cut(s) 904
BssMI GATC 2 cut(s) 199, 889
BssNI GRCGYC 1 cut(s) 414
Bst2UI CCWGG 1 cut(s) 666
Bst4CI ACNGT 6 cut(s) 73, 244, 905, 914, 1105, 1115
Bst6I CTCTTC 4 cut(s) 129, 264, 269, 611
BstACI GRCGYC 1 cut(s) 414
BstAFI CTTAAG 1 cut(s) 611
BstC8I GCNNGC 2 cut(s) 305, 434
BstDSI CCRYGG 1 cut(s) 904
BstKTI GATC 2 cut(s) 202, 892
BstMAI GTCTC 4 cut(s) 518, 613, 809, 1010
BstMBI GATC 2 cut(s) 199, 889
BstMCI CGRYCG 1 cut(s) 904
BstMWI GCNNNNNNNGC 3 cut(s) 374, 383, 512
BstNI CCWGG 1 cut(s) 666
BstSCI CCNGG 1 cut(s) 664
BstSLI GKGCMC 1 cut(s) 919
BstV1I GCAGC 7 cut(s) 130, 319, 370, 448, 499, 611, 947
BstV2I GAAGAC 1 cut(s) 713
BsuRI GGCC 3 cut(s) 58, 238, 801
BtgI CCRYGG 1 cut(s) 904
BtgZI GCGATG 1 cut(s) 567
BtsIMutI CAGTG 2 cut(s) 120, 917
Cac8I GCNNGC 2 cut(s) 305, 434
CciI TCATGA 1 cut(s) 834
Cfr13I GGNCC 1 cut(s) 236
CspCI CAANNNNNGTGG 2 cut(s) 769, 804
CviAII CATG 1 cut(s) 835
DpnI GATC 2 cut(s) 201, 891
DpnII GATC 2 cut(s) 199, 889
EaeI YGGCCR 1 cut(s) 799
Eam1104I CTCTTC 4 cut(s) 129, 264, 269, 611
EarI CTCTTC 4 cut(s) 129, 264, 269, 611
Eco147I AGGCCT 1 cut(s) 58
Eco31I GGTCTC 1 cut(s) 1010
Eco57I CTGAAG 2 cut(s) 108, 288
Eco88I CYCGRG 1 cut(s) 192
EcoRII CCWGG 1 cut(s) 664
FaeI CATG 1 cut(s) 838
FaqI GGGAC 2 cut(s) 27, 671
FatI CATG 1 cut(s) 834
Fnu4HI GCNGC 8 cut(s) 119, 308, 384, 437, 513, 600, 802, 936
Fsp4HI GCNGC 8 cut(s) 119, 308, 384, 437, 513, 600, 802, 936
FspBI CTAG 2 cut(s) 60, 186
GluI GCNGC 8 cut(s) 119, 308, 384, 437, 513, 600, 802, 936
GsuI CTGGAG 1 cut(s) 96
HaeIII GGCC 3 cut(s) 58, 238, 801
HapII CCGG 1 cut(s) 961
Hin1I GRCGYC 1 cut(s) 414
Hin1II CATG 1 cut(s) 838
HincII GTYRAC 2 cut(s) 634, 1091
HindII GTYRAC 2 cut(s) 634, 1091
HindIII AAGCTT 2 cut(s) 375, 504
HinfI GANTC 3 cut(s) 794, 821, 983
HpaI GTTAAC 1 cut(s) 634
HpaII CCGG 1 cut(s) 961
HphI GGTGA 4 cut(s) 152, 508, 692, 816
Hpy166II GTNNAC 4 cut(s) 98, 634, 917, 1091
Hpy8I GTNNAC 4 cut(s) 98, 634, 917, 1091
Hpy99I CGWCG 1 cut(s) 244
HpyAV CCTTC 2 cut(s) 83, 667
HpyCH4III ACNGT 6 cut(s) 73, 244, 905, 914, 1105, 1115
HpyCH4IV ACGT 2 cut(s) 291, 414
HpyCH4V TGCA 7 cut(s) 118, 338, 386, 467, 515, 917, 1110
HpyF10VI GCNNNNNNNGC 3 cut(s) 374, 383, 512
HpySE526I ACGT 2 cut(s) 291, 414
Hsp92I GRCGYC 1 cut(s) 414
Hsp92II CATG 1 cut(s) 838
Kpn2I TCCGGA 1 cut(s) 960
KspAI GTTAAC 1 cut(s) 634
Kzo9I GATC 2 cut(s) 199, 889
LmnI GCTCC 3 cut(s) 115, 182, 963
Lsp1109I GCAGC 7 cut(s) 130, 319, 370, 448, 499, 611, 947
LweI GCATC 2 cut(s) 253, 544
MaeI CTAG 2 cut(s) 60, 186
MaeII ACGT 2 cut(s) 291, 414
MaeIII GTNAC 5 cut(s) 4, 320, 449, 680, 728
MalI GATC 2 cut(s) 201, 891
MboI GATC 2 cut(s) 199, 889
MboII GAAGA 9 cut(s) 146, 158, 243, 281, 286, 382, 511, 628, 713
MfeI CAATTG 1 cut(s) 172
MhlI GDGCHC 1 cut(s) 919
MluCI AATT 7 cut(s) 46, 172, 559, 584, 704, 971, 1052
MmeI TCCRAC 1 cut(s) 560
MnlI CCTC 8 cut(s) 48, 130, 201, 945, 973, 1031, 1068, 1071
MroI TCCGGA 1 cut(s) 960
MseI TTAA 5 cut(s) 51, 294, 612, 633, 1117
MspCI CTTAAG 1 cut(s) 611
MspI CCGG 1 cut(s) 961
MspR9I CCNGG 1 cut(s) 666
MunI CAATTG 1 cut(s) 172
Mva1269I GAATGC 3 cut(s) 305, 434, 554
MvaI CCWGG 1 cut(s) 666
MwoI GCNNNNNNNGC 3 cut(s) 374, 383, 512
NdeII GATC 2 cut(s) 199, 889
NlaIII CATG 1 cut(s) 838
NlaIV GGNNCC 4 cut(s) 111, 285, 408, 882
NmuCI GTSAC 4 cut(s) 320, 449, 680, 728
PaeR7I CTCGAG 1 cut(s) 192
PagI TCATGA 1 cut(s) 834
PceI AGGCCT 1 cut(s) 58
PctI GAATGC 3 cut(s) 305, 434, 554
PfeI GAWTC 3 cut(s) 794, 821, 983
PfoI TCCNGGA 1 cut(s) 664
PkrI GCNGC 8 cut(s) 120, 309, 385, 438, 514, 601, 803, 937
Psp6I CCWGG 1 cut(s) 664
PspGI CCWGG 1 cut(s) 664
PspN4I GGNNCC 4 cut(s) 111, 285, 408, 882
PspPI GGNCC 1 cut(s) 236
PspXI VCTCGAGB 1 cut(s) 192
SaqAI TTAA 5 cut(s) 51, 294, 612, 633, 1117
SatI GCNGC 8 cut(s) 119, 308, 384, 437, 513, 600, 802, 936
Sau3AI GATC 2 cut(s) 199, 889
Sau96I GGNCC 1 cut(s) 236
ScrFI CCNGG 1 cut(s) 666
SduI GDGCHC 1 cut(s) 919
SfaNI GCATC 2 cut(s) 253, 544
Sfr274I CTCGAG 1 cut(s) 192
SlaI CTCGAG 1 cut(s) 192
SmlI CTYRAG 2 cut(s) 192, 611
SmoI CTYRAG 2 cut(s) 192, 611
Sse9I AATT 7 cut(s) 46, 172, 559, 584, 704, 971, 1052
SseBI AGGCCT 1 cut(s) 58
SsiI CCGC 2 cut(s) 741, 802
SspMI CTAG 2 cut(s) 60, 186
StuI AGGCCT 1 cut(s) 58
StyD4I CCNGG 1 cut(s) 664
TaaI ACNGT 6 cut(s) 73, 244, 905, 914, 1105, 1115
TaiI ACGT 2 cut(s) 294, 417
TaqI TCGA 3 cut(s) 76, 193, 214
TasI AATT 7 cut(s) 46, 172, 559, 584, 704, 971, 1052
TauI GCSGC 1 cut(s) 804
TfiI GAWTC 3 cut(s) 794, 821, 983
Tru1I TTAA 5 cut(s) 51, 294, 612, 633, 1117
Tru9I TTAA 5 cut(s) 51, 294, 612, 633, 1117
TscAI CASTG 2 cut(s) 120, 924
TseFI GTSAC 4 cut(s) 320, 449, 680, 728
TseI GCWGC 7 cut(s) 118, 307, 383, 436, 512, 599, 935
Tsp45I GTSAC 4 cut(s) 320, 449, 680, 728
TspDTI ATGAA 4 cut(s) 159, 167, 713, 938
TspRI CASTG 2 cut(s) 120, 924
Vha464I CTTAAG 1 cut(s) 611
VneI GTGCAC 1 cut(s) 915
XapI RAATTY 2 cut(s) 971, 1052
XhoI CTCGAG 1 cut(s) 192
XspI CTAG 2 cut(s) 60, 186
ZraI GACGTC 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.