Rh6CG353100

histone-lysine N-methyltransferase, H3 lysine-9 specific

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0002400
Physical Location & Seq
Reverse (-)
54231617 .. 54233938
2322 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG353100.1

Sequence Viewer

Length: 1320 bp
ATGGCTATCGTGAAAGTACGTGGAACCCTAAAAGACGGTTTATTTACTCCAATATCGAAGAGGCCAAGAGTTGATGATTTTGGAAATCTTCCCAATGGGCGTGGATCATATAGAGTTATGGTGCAAAGTAGTGAAAGTGAAGATCACAATTCTCTACTTGATCGTGATTTGGTTAAATCATCAAAAAATCTCCAGCAAGGTAAGAGAAATGATGGGATTTCGCATTTTTCTATTACAGCTACACCACGAGAAATTTTGCTCTTACCACAAAGTGTATTGAAAAGTAACTCTGTAAAGAGCAAGGAGGATCGGAACACTAACCTATCAATCCGCCAGGGGTTAAGGAAGCGACAACCTTTGTCTGATGAATACCGACCTAAAAGGACGGCTGTATGTGGAAATTTTGATTTTAGTCACCAGCATGTGCAGGAAGATAAAGATAATACCGAGGTGAAGAAGGATCTTAATGTGATCGAAGATACTTTGGCCAAATCCAAGAAACAAAATTGGAGCAACGAATATCAGCACAAAGTCAACACAGTGTCCAAAAATGTTGTTACAACTTTTAATTCAAAAAATAGTCATTTCGTCTTGGGGAGAAAGAGACAACCACTGTGGGACCACCAGCAACCTTACCAGACGAGTATGCATGCGGAGTTTACTAGTCAAAAGTCGGTGGAAGTGGAAAATAAAAATCGTAACAAGGTCAAGGGGGCTTTGGAAGCCTATAGAGAGATATTGACTAAGTCCGAGGCACAAAACTGTAATTGGAGTTACATTAAAGCAGCAATGGATCTCAAAAAACAAGGAAAATGGGTTAACAAGATGAAGCAAGTAGGATCGATTGCAGGAGTAAAAGTTGGTGATAGGTTTCGACATAGAGCTCAACTAACCATTGTTGGTCTTCATCAACAATTTACATGTGGTATTGATTATATGTGGAGGAATGACGGAAAAATTTTGGCCACAAGTATTGTTGATTCTGGTCGGTATGTTAACAATTTGCAATCTTCTGATATACTGATCTACTCTGGTCAAGGTGGAAAGTCTCTGTTTCATAAAACTAAACCGACATATCAAACTAAACCGACAGATCAAATAATGCAAGGTGGAAACCTTGCATTAAGGAATAGCAAAGAAGAAGGAACTCCTATAAGGGTAATTCGAAGGTTGAAACATTCTAAGGGTTCGTGTTATGTTTACTATGGATTATACACTGTAGAAAGAGTTCTGCAAGAAAGACAACTTGGTATTATGATCTATAAATTTATGTTGAGAAGGAAGTCGGGACAACCAGAGCTTTCATTTGACAGTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 ko04211 map00310 map04211
Pfam Domains
Protein Families
Pre-SET SAD_SRA SET

Protein Analysis

439

Amino Acids

50.26

Weight (kDa)

9.92

Isoelectric Point (pI)

40.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAD_SRA PF02182 279 - 431 3.7e-40 SAD/SRA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 331, 653
AclWI GGATC 5 cut(s) 112, 315, 468, 801, 847
AcoI YGGCCR 2 cut(s) 486, 963
AcsI RAATTY 4 cut(s) 252, 400, 957, 1265
AdeI CACNNNGTG 1 cut(s) 272
AfaI GTAC 1 cut(s) 18
AflIII ACRYGT 1 cut(s) 920
AgsI TTSAA 3 cut(s) 280, 573, 1174
AhlI ACTAGT 1 cut(s) 662
AjnI CCWGG 1 cut(s) 333
AjuI GAANNNNNNNTTGG 2 cut(s) 1230, 1262
AluBI AGCT 3 cut(s) 239, 884, 1300
AluI AGCT 3 cut(s) 239, 884, 1300
Alw21I GWGCWC 1 cut(s) 886
Alw26I GTCTC 2 cut(s) 598, 1053
AlwI GGATC 5 cut(s) 112, 315, 468, 801, 847
AoxI GGCC 3 cut(s) 62, 486, 963
ApeKI GCWGC 1 cut(s) 785
ApoI RAATTY 4 cut(s) 252, 400, 957, 1265
Asp700I GAANNNNTTC 1 cut(s) 1227
AspS9I GGNCC 1 cut(s) 619
AsuHPI GGTGA 3 cut(s) 407, 463, 875
AsuII TTCGAA 1 cut(s) 1165
AvaII GGWCC 1 cut(s) 619
BalI TGGCCA 2 cut(s) 488, 965
BanII GRGCYC 1 cut(s) 886
BauI CACGAG 1 cut(s) 246
BbsI GAAGAC 1 cut(s) 896
Bbv12I GWGCWC 1 cut(s) 886
BbvI GCAGC 1 cut(s) 797
BccI CCATC 1 cut(s) 206
BceAI ACGGC 1 cut(s) 402
BciT130I CCWGG 1 cut(s) 335
BcoDI GTCTC 2 cut(s) 598, 1053
BcuI ACTAGT 1 cut(s) 662
BfaI CTAG 1 cut(s) 663
BfmI CTRYAG 2 cut(s) 727, 1218
BisI GCNGC 1 cut(s) 786
BlsI GCNGC 1 cut(s) 787
Bme1390I CCNGG 1 cut(s) 335
Bme18I GGWCC 1 cut(s) 619
BmgT120I GGNCC 1 cut(s) 619
BmiI GGNNCC 2 cut(s) 25, 620
BmrFI CCNGG 1 cut(s) 335
BpiI GAAGAC 1 cut(s) 896
BpmI CTGGAG 1 cut(s) 176
Bpu14I TTCGAA 1 cut(s) 1165
Bsa29I ATCGAT 1 cut(s) 842
BsaAI YACGTR 1 cut(s) 20
BsaJI CCNNGG 3 cut(s) 334, 447, 750
BsaXI ACNNNNNCTCC 2 cut(s) 843, 873
Bse3DI GCAATG 1 cut(s) 795
BseBI CCWGG 1 cut(s) 335
BseCI ATCGAT 1 cut(s) 842
BseDI CCNNGG 3 cut(s) 334, 447, 750
BseMI GCAATG 1 cut(s) 795
BseXI GCAGC 1 cut(s) 797
BsgI GTGCAG 1 cut(s) 446
BshFI GGCC 3 cut(s) 64, 488, 965
BshVI ATCGAT 1 cut(s) 842
BsiHKAI GWGCWC 1 cut(s) 886
BslFI GGGAC 2 cut(s) 632, 1302
BsmAI GTCTC 2 cut(s) 598, 1053
BsmFI GGGAC 2 cut(s) 632, 1302
BsnI GGCC 3 cut(s) 64, 488, 965
Bsp119I TTCGAA 1 cut(s) 1165
Bsp1286I GDGCHC 1 cut(s) 886
BspACI CCGC 2 cut(s) 331, 653
BspANI GGCC 3 cut(s) 64, 488, 965
BspDI ATCGAT 1 cut(s) 842
BspLI GGNNCC 2 cut(s) 25, 620
BspPI GGATC 5 cut(s) 112, 315, 468, 801, 847
BspT104I TTCGAA 1 cut(s) 1165
BsrDI GCAATG 1 cut(s) 795
BssECI CCNNGG 3 cut(s) 334, 447, 750
BssSI CACGAG 1 cut(s) 246
Bst2BI CACGAG 1 cut(s) 246
Bst2UI CCWGG 1 cut(s) 335
Bst4CI ACNGT 6 cut(s) 38, 541, 615, 764, 1219, 1313
Bst6I CTCTTC 1 cut(s) 53
BstBAI YACGTR 1 cut(s) 20
BstBI TTCGAA 1 cut(s) 1165
BstC8I GCNNGC 1 cut(s) 651
BstDEI CTNAG 2 cut(s) 744, 1182
BstMAI GTCTC 2 cut(s) 598, 1053
BstMWI GCNNNNNNNGC 1 cut(s) 722
BstNI CCWGG 1 cut(s) 335
BstNSI RCATGY 3 cut(s) 425, 653, 924
BstSCI CCNGG 1 cut(s) 333
BstSFI CTRYAG 2 cut(s) 727, 1218
BstV1I GCAGC 1 cut(s) 797
BstV2I GAAGAC 1 cut(s) 896
BstX2I RGATCY 2 cut(s) 460, 793
BstYI RGATCY 2 cut(s) 460, 793
Bsu15I ATCGAT 1 cut(s) 842
BsuRI GGCC 3 cut(s) 64, 488, 965
BsuTUI ATCGAT 1 cut(s) 842
BtsIMutI CAGTG 3 cut(s) 546, 611, 1215
Cac8I GCNNGC 1 cut(s) 651
Cfr13I GGNCC 1 cut(s) 619
ClaI ATCGAT 1 cut(s) 842
Csp6I GTAC 1 cut(s) 17
CspCI CAANNNNNGTGG 6 cut(s) 82, 117, 596, 631, 955, 990
CviAII CATG 3 cut(s) 422, 650, 921
CviQI GTAC 1 cut(s) 17
DdeI CTNAG 2 cut(s) 744, 1182
DraIII CACNNNGTG 1 cut(s) 272
EaeI YGGCCR 2 cut(s) 486, 963
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
EciI GGCGGA 1 cut(s) 320
Ecl136II GAGCTC 1 cut(s) 884
Eco24I GRGCYC 1 cut(s) 886
Eco47I GGWCC 1 cut(s) 619
Eco53kI GAGCTC 1 cut(s) 884
EcoICRI GAGCTC 1 cut(s) 884
EcoRII CCWGG 1 cut(s) 333
EcoT22I ATGCAT 1 cut(s) 651
EcoT38I GRGCYC 1 cut(s) 886
FaeI CATG 3 cut(s) 425, 653, 924
FaqI GGGAC 2 cut(s) 632, 1302
FatI CATG 3 cut(s) 421, 649, 920
Fnu4HI GCNGC 1 cut(s) 786
FriOI GRGCYC 1 cut(s) 886
Fsp4HI GCNGC 1 cut(s) 786
FspBI CTAG 1 cut(s) 663
GluI GCNGC 1 cut(s) 786
GsuI CTGGAG 1 cut(s) 176
HaeIII GGCC 3 cut(s) 64, 488, 965
Hin1II CATG 3 cut(s) 425, 653, 924
HincII GTYRAC 3 cut(s) 535, 820, 997
HindII GTYRAC 3 cut(s) 535, 820, 997
HinfI GANTC 1 cut(s) 980
HpaI GTTAAC 2 cut(s) 820, 997
HphI GGTGA 3 cut(s) 407, 463, 875
Hpy166II GTNNAC 5 cut(s) 535, 660, 820, 997, 1201
Hpy188I TCNGA 4 cut(s) 312, 364, 751, 1015
Hpy188III TCNNGA 3 cut(s) 10, 164, 1287
Hpy8I GTNNAC 5 cut(s) 535, 660, 820, 997, 1201
HpyAV CCTTC 4 cut(s) 451, 1136, 1161, 1272
HpyCH4III ACNGT 6 cut(s) 38, 541, 615, 764, 1219, 1313
HpyCH4IV ACGT 1 cut(s) 19
HpyCH4V TGCA 8 cut(s) 124, 427, 649, 848, 1006, 1105, 1121, 1234
HpyF10VI GCNNNNNNNGC 1 cut(s) 722
HpyF3I CTNAG 2 cut(s) 744, 1182
HpySE526I ACGT 1 cut(s) 19
Hsp92II CATG 3 cut(s) 425, 653, 924
KspAI GTTAAC 2 cut(s) 820, 997
LmnI GCTCC 1 cut(s) 510
Lsp1109I GCAGC 1 cut(s) 797
MaeI CTAG 1 cut(s) 663
MaeII ACGT 1 cut(s) 19
MaeIII GTNAC 5 cut(s) 284, 413, 556, 698, 773
MboII GAAGA 9 cut(s) 70, 80, 152, 443, 466, 488, 896, 1002, 1151
MflI RGATCY 2 cut(s) 460, 793
MhlI GDGCHC 1 cut(s) 886
MlsI TGGCCA 2 cut(s) 488, 965
MluNI TGGCCA 2 cut(s) 488, 965
MnlI CCTC 5 cut(s) 54, 298, 442, 745, 936
Mox20I TGGCCA 2 cut(s) 488, 965
Mph1103I ATGCAT 1 cut(s) 651
MroXI GAANNNNTTC 1 cut(s) 1227
MscI TGGCCA 2 cut(s) 488, 965
MseI TTAA 8 cut(s) 174, 341, 465, 567, 780, 819, 996, 1124
MslI CAYNNNNRTG 1 cut(s) 420
Msp20I TGGCCA 2 cut(s) 488, 965
MspR9I CCNGG 1 cut(s) 335
MvaI CCWGG 1 cut(s) 335
MwoI GCNNNNNNNGC 1 cut(s) 722
NlaIII CATG 3 cut(s) 425, 653, 924
NlaIV GGNNCC 2 cut(s) 25, 620
NmuCI GTSAC 1 cut(s) 413
NsiI ATGCAT 1 cut(s) 651
NspI RCATGY 3 cut(s) 425, 653, 924
NspV TTCGAA 1 cut(s) 1165
PaeI GCATGC 1 cut(s) 653
PciI ACATGT 1 cut(s) 920
PdmI GAANNNNTTC 1 cut(s) 1227
PfeI GAWTC 1 cut(s) 980
PflFI GACNNNGTC 1 cut(s) 745
PkrI GCNGC 1 cut(s) 787
Ppu21I YACGTR 1 cut(s) 20
PscI ACATGT 1 cut(s) 920
Psp124BI GAGCTC 1 cut(s) 886
Psp6I CCWGG 1 cut(s) 333
PspGI CCWGG 1 cut(s) 333
PspN4I GGNNCC 2 cut(s) 25, 620
PspPI GGNCC 1 cut(s) 619
PsrI GAACNNNNNNTAC 2 cut(s) 1212, 1244
PsuI RGATCY 2 cut(s) 460, 793
PsyI GACNNNGTC 1 cut(s) 745
RsaI GTAC 1 cut(s) 18
RsaNI GTAC 1 cut(s) 17
RseI CAYNNNNRTG 1 cut(s) 420
SacI GAGCTC 1 cut(s) 886
SaqAI TTAA 8 cut(s) 174, 341, 465, 567, 780, 819, 996, 1124
SatI GCNGC 1 cut(s) 786
Sau96I GGNCC 1 cut(s) 619
ScrFI CCNGG 1 cut(s) 335
SduI GDGCHC 1 cut(s) 886
SfcI CTRYAG 2 cut(s) 727, 1218
SfuI TTCGAA 1 cut(s) 1165
SinI GGWCC 1 cut(s) 619
SmiMI CAYNNNNRTG 1 cut(s) 420
SpeI ACTAGT 1 cut(s) 662
SphI GCATGC 1 cut(s) 653
SsiI CCGC 2 cut(s) 331, 653
SspMI CTAG 1 cut(s) 663
SstI GAGCTC 1 cut(s) 886
StyD4I CCNGG 1 cut(s) 333
TaaI ACNGT 6 cut(s) 38, 541, 615, 764, 1219, 1313
TaiI ACGT 1 cut(s) 22
TaqI TCGA 5 cut(s) 56, 474, 842, 874, 1165
TfiI GAWTC 1 cut(s) 980
Tru1I TTAA 8 cut(s) 174, 341, 465, 567, 780, 819, 996, 1124
Tru9I TTAA 8 cut(s) 174, 341, 465, 567, 780, 819, 996, 1124
TscAI CASTG 3 cut(s) 546, 618, 1222
TseFI GTSAC 1 cut(s) 413
TseI GCWGC 1 cut(s) 785
Tsp45I GTSAC 1 cut(s) 413
TspDTI ATGAA 5 cut(s) 381, 842, 896, 1046, 1293
TspGWI ACGGA 1 cut(s) 966
TspRI CASTG 3 cut(s) 546, 618, 1222
Tth111I GACNNNGTC 1 cut(s) 745
VpaK11BI GGWCC 1 cut(s) 619
XapI RAATTY 4 cut(s) 252, 400, 957, 1265
XceI RCATGY 3 cut(s) 425, 653, 924
XmnI GAANNNNTTC 1 cut(s) 1227
XspI CTAG 1 cut(s) 663
Zsp2I ATGCAT 1 cut(s) 651
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.