RchiOBHm_Chr1g0325811

histone-lysine N-methyltransferase, H3 lysine-9 specific

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002400
Physical Location & Seq
Reverse (-)
13881391 .. 13881870
480 bp
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UTR
Exon/CDS
Intron
PRQ55550

Sequence Viewer

Length: 480 bp
ATGAGGAAACAATTAGGAGCCATTCGAGGAGTAAAAGTTGGTGACAAGTTTCGATATAGAGCTCAACTAAATATCGTTGGGCTTCATCGACATTTCACCAATGGAATTGATTATATAAAGAGCAGAGATGGGAAAATACTAGTCACAAGTATTGTTGATTCTGGTCGTTATGCCAACAATATGCAATGTTCCGATGTATTGATCTATTCTGGTGAAGGTGGAAATTCCCCGTTTAATAAATTGAAACCAACAGATCAGACACTTGAGCGTGGAAACCTTGCATTGAAAAATAGCACAGAAGCACAAACTCCTGTAAGGGTAATCCGCACCTTTAAACTTTCAAAGAGTTCATGTTATGTTTACTATGGTCTATACATCGTAGAGCATCTTTCAAAAGAAAGGGGGCAATTTGGTAAGATGGTTTATAAATTTAGGTTGAGAAGGAAGGCAGGACAACCAGAAATAACATTCAAACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 ko04211 map00310 map04211
Pfam Domains
Protein Families
Pre-SET SAD_SRA SET

Protein Analysis

159

Amino Acids

18.16

Weight (kDa)

10.14

Isoelectric Point (pI)

19.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAD_SRA PF02182 5 - 152 5.2e-46 SAD/SRA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 426
AciI CCGC 1 cut(s) 325
AcsI RAATTY 2 cut(s) 223, 428
AgsI TTSAA 5 cut(s) 244, 286, 342, 393, 472
AhlI ACTAGT 1 cut(s) 139
AluBI AGCT 1 cut(s) 62
AluI AGCT 1 cut(s) 62
Alw21I GWGCWC 1 cut(s) 64
ApoI RAATTY 2 cut(s) 223, 428
AsuHPI GGTGA 3 cut(s) 53, 88, 224
BanII GRGCYC 1 cut(s) 64
Bbv12I GWGCWC 1 cut(s) 64
BccI CCATC 2 cut(s) 122, 412
BcuI ACTAGT 1 cut(s) 139
BfaI CTAG 1 cut(s) 140
BmiI GGNNCC 1 cut(s) 19
BmsI GCATC 1 cut(s) 394
BpuEI CTTGAG 1 cut(s) 284
BsaXI ACNNNNNCTCC 2 cut(s) 21, 51
Bse3DI GCAATG 1 cut(s) 191
BseMI GCAATG 1 cut(s) 191
BseRI GAGGAG 1 cut(s) 42
BsiHKAI GWGCWC 1 cut(s) 64
Bsp1286I GDGCHC 1 cut(s) 64
Bsp143I GATC 2 cut(s) 201, 253
BspACI CCGC 1 cut(s) 325
BspLI GGNNCC 1 cut(s) 19
BsrDI GCAATG 1 cut(s) 191
BssMI GATC 2 cut(s) 201, 253
Bst4CI ACNGT 1 cut(s) 477
BstKTI GATC 2 cut(s) 204, 256
BstMBI GATC 2 cut(s) 201, 253
CviAII CATG 1 cut(s) 351
CviJI RGCY 3 cut(s) 20, 62, 82
CviKI_1 RGCY 3 cut(s) 20, 62, 82
DpnI GATC 2 cut(s) 203, 255
DpnII GATC 2 cut(s) 201, 253
DraI TTTAAA 1 cut(s) 334
Ecl136II GAGCTC 1 cut(s) 62
Eco24I GRGCYC 1 cut(s) 64
Eco53kI GAGCTC 1 cut(s) 62
EcoICRI GAGCTC 1 cut(s) 62
EcoT38I GRGCYC 1 cut(s) 64
FaeI CATG 1 cut(s) 354
FatI CATG 1 cut(s) 350
FriOI GRGCYC 1 cut(s) 64
FspBI CTAG 1 cut(s) 140
Hin1II CATG 1 cut(s) 354
HinfI GANTC 1 cut(s) 158
HphI GGTGA 3 cut(s) 53, 88, 224
Hpy166II GTNNAC 1 cut(s) 361
Hpy188I TCNGA 2 cut(s) 193, 258
Hpy8I GTNNAC 1 cut(s) 361
HpyAV CCTTC 3 cut(s) 209, 435, 439
HpyCH4III ACNGT 1 cut(s) 477
HpyCH4V TGCA 2 cut(s) 184, 281
Hsp92II CATG 1 cut(s) 354
Kzo9I GATC 2 cut(s) 201, 253
LmnI GCTCC 1 cut(s) 17
LpnPI CCDG 5 cut(s) 147, 195, 324, 435, 471
LweI GCATC 1 cut(s) 394
MaeI CTAG 1 cut(s) 140
MaeIII GTNAC 2 cut(s) 41, 142
MalI GATC 2 cut(s) 203, 255
MboI GATC 2 cut(s) 201, 253
MhlI GDGCHC 1 cut(s) 64
MluCI AATT 6 cut(s) 11, 105, 223, 239, 407, 428
MnlI CCTC 1 cut(s) 20
MseI TTAA 2 cut(s) 234, 333
NdeII GATC 2 cut(s) 201, 253
NlaIII CATG 1 cut(s) 354
NlaIV GGNNCC 1 cut(s) 19
NmuCI GTSAC 2 cut(s) 41, 142
PfeI GAWTC 1 cut(s) 158
PsiI TTATAA 1 cut(s) 426
Psp124BI GAGCTC 1 cut(s) 64
PspN4I GGNNCC 1 cut(s) 19
SacI GAGCTC 1 cut(s) 64
SaqAI TTAA 2 cut(s) 234, 333
Sau3AI GATC 2 cut(s) 201, 253
SduI GDGCHC 1 cut(s) 64
SetI ASST 5 cut(s) 64, 220, 279, 332, 437
SfaNI GCATC 1 cut(s) 394
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
SpeI ACTAGT 1 cut(s) 139
Sse9I AATT 6 cut(s) 11, 105, 223, 239, 407, 428
SsiI CCGC 1 cut(s) 325
SspMI CTAG 1 cut(s) 140
SstI GAGCTC 1 cut(s) 64
TaaI ACNGT 1 cut(s) 477
TaqI TCGA 3 cut(s) 25, 52, 88
TasI AATT 6 cut(s) 11, 105, 223, 239, 407, 428
TfiI GAWTC 1 cut(s) 158
Tru1I TTAA 2 cut(s) 234, 333
Tru9I TTAA 2 cut(s) 234, 333
TseFI GTSAC 2 cut(s) 41, 142
Tsp45I GTSAC 2 cut(s) 41, 142
TspDTI ATGAA 2 cut(s) 74, 339
XapI RAATTY 2 cut(s) 223, 428
XspI CTAG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.