Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001354.1

Orthogroup ID

OG0002400

Physical Location & Seq

Genomic Coordinates Reverse (-)

13478 .. 14668

Gene Structure 1191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001354.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

atggtgcaaagtagtgaaagtgaagatcacaattctctacttgatcgtgatttggttaaatcatccaaaaatctccagcaaggtaagagaaattatgggatttcgcatttttctattacggctacaccacgagaaattttgccctcaccacagagtgtattgaaaagtaactctgtaaagagcaaggaggatcggaacactaacctatcaatccaccaaggattgaggaagcgacaacctttgtctgatgaatatcgacctgaaaggacggctgtatgtggaaattttgattttagtcaccagcatgtgcataatttggaagataatgataataccgaggtgaagaaggatcttgatgtgatcgaagatactttggtcaaatccaagaaacaaaattggagcaacgaatatcagcacaaaatcaacacagtgtccaaaaatgttgttacaactttcaattcaaaaaatagtcatttcgtcttagcgagaaagagacaaccactgtgggaccaccagcaaccttaccagacgagtatgcatgcggagtttactagtcaaaaatcggtggaagtggaacataaaaatcgtaacaaggtcaagggggctttggaagcctatagagagatattgactaagtctgaggcacaaaactgtaattggagttacattaaagtagcaatggatctcaaaaaacaaggaaaatgggttaacaagatgaagcaagtaggatcgattgcaggagtacaagttggtgataggtttcgacatagagctcaactaaccattgttggtcttcatcgacaatttacatgtggtattgattatatgtggaggaaggacggaaaaattttggccacaagtattgttgattctggtcgctatgttaacaatttgcaatcttctgatatactgatctactctggtcaaggtggaaagtctccgtttcataaaactaaaccgacagatcaaataatgcaaggtggaaaccttgcattaaggaatagcaaagaagaaggaactcctgtaagggtaattcgaaggttgaaacattctaagggttcgtgttatgtttactatggattatacaccgtagaaagagttctgcaagaaagacaacttggtattatgatctataaatttacgttgagaaggaagtcgggacaaccagagctttcatttgacagtaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

396

Amino Acids

45.55

Weight (kDa)

9.72

Isoelectric Point (pI)

47.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002400)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24480 FvH4_2g24480 FvH4_7g03510 FvH4_7g26750 FvH4_7g26780 FvH4_7g26780 FvH4_7g26780
pyrus_communis	pycom07g04430
rosa_chinensis	RchiOBHm_Chr1g0325811 RchiOBHm_Chr1g0373401 RchiOBHm_Chr6g0292341
rosa_laevigata	RLG00000012041 RLG00000026824 RLG00000030101
rosa_multiflora	Rmu_sc0001354.1_g000005 Rmu_sc0017023.1_g000001 Rmu_sc0019006.1_g000003
rosa_roxburghii	Rroxscaffold_4G00284230 Rroxscaffold_4G00324280
rosa_rugosa	Rorug01G0055100 Rorug01G0055200 Rorug01G0377500 Rorug06G0225500
rosa_samantha	Rh1AG071400 Rh1AG071500 Rh1AG386600 Rh1BG058400 Rh1BG350600 Rh1BG350700 Rh1BG350900 Rh1CG070900 Rh1CG363700 Rh1DG075600 Rh1DG075700 Rh1DG381400 Rh6AG338900 Rh6BG346000 Rh6CG353100 Rh6DG339000
rosa_wichuraiana	Rw1G005820 Rw1G034860 Rw6G029500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	542
AclWI	GGATC	4 cut(s)	198, 357, 690, 736
AcoI	YGGCCR	1 cut(s)	852
AcsI	RAATTY	4 cut(s)	135, 283, 846, 1136
AdeI	CACNNNGTG	1 cut(s)	155
AfaI	GTAC	1 cut(s)	744
AflIII	ACRYGT	1 cut(s)	809
AgsI	TTSAA	4 cut(s)	163, 457, 462, 1045
AhlI	ACTAGT	1 cut(s)	551
AjuI	GAANNNNNNNTTGG	2 cut(s)	1101, 1133
AluBI	AGCT	2 cut(s)	773, 1171
AluI	AGCT	2 cut(s)	773, 1171
Alw21I	GWGCWC	1 cut(s)	775
Alw26I	GTCTC	2 cut(s)	487, 942
AlwI	GGATC	4 cut(s)	198, 357, 690, 736
AoxI	GGCC	1 cut(s)	852
ApoI	RAATTY	4 cut(s)	135, 283, 846, 1136
Asp700I	GAANNNNTTC	1 cut(s)	1098
AspS9I	GGNCC	1 cut(s)	508
AsuHPI	GGTGA	4 cut(s)	138, 290, 352, 764
AsuII	TTCGAA	1 cut(s)	1036
AvaII	GGWCC	1 cut(s)	508
BaeI	ACNNNNGTAYC	2 cut(s)	360, 393
BalI	TGGCCA	1 cut(s)	854
BanII	GRGCYC	1 cut(s)	775
BauI	CACGAG	1 cut(s)	129
BbsI	GAAGAC	1 cut(s)	785
Bbv12I	GWGCWC	1 cut(s)	775
BceAI	ACGGC	2 cut(s)	135, 285
BcoDI	GTCTC	2 cut(s)	487, 942
BcuI	ACTAGT	1 cut(s)	551
BfaI	CTAG	1 cut(s)	552
BfmI	CTRYAG	1 cut(s)	616
Bme18I	GGWCC	1 cut(s)	508
BmgT120I	GGNCC	1 cut(s)	508
BmiI	GGNNCC	1 cut(s)	509
BpiI	GAAGAC	1 cut(s)	785
BpmI	CTGGAG	1 cut(s)	59
Bpu14I	TTCGAA	1 cut(s)	1036
Bsa29I	ATCGAT	1 cut(s)	731
BsaBI	GATNNNNATC	1 cut(s)	252
BsaJI	CCNNGG	2 cut(s)	217, 336
BsaXI	ACNNNNNCTCC	2 cut(s)	732, 762
Bse3DI	GCAATG	1 cut(s)	684
Bse8I	GATNNNNATC	1 cut(s)	252
BseCI	ATCGAT	1 cut(s)	731
BseDI	CCNNGG	2 cut(s)	217, 336
BseGI	GGATG	1 cut(s)	62
BseJI	GATNNNNATC	1 cut(s)	252
BseMI	GCAATG	1 cut(s)	684
BseMII	CTCAG	1 cut(s)	630
BshFI	GGCC	1 cut(s)	854
BshVI	ATCGAT	1 cut(s)	731
BsiHKAI	GWGCWC	1 cut(s)	775
BslFI	GGGAC	2 cut(s)	521, 1173
BsmAI	GTCTC	2 cut(s)	487, 942
BsmFI	GGGAC	2 cut(s)	521, 1173
BsnI	GGCC	1 cut(s)	854
Bsp119I	TTCGAA	1 cut(s)	1036
Bsp1286I	GDGCHC	1 cut(s)	775
BspACI	CCGC	1 cut(s)	542
BspANI	GGCC	1 cut(s)	854
BspCNI	CTCAG	1 cut(s)	631
BspDI	ATCGAT	1 cut(s)	731
BspLI	GGNNCC	1 cut(s)	509
BspPI	GGATC	4 cut(s)	198, 357, 690, 736
BspT104I	TTCGAA	1 cut(s)	1036
BsrDI	GCAATG	1 cut(s)	684
BssECI	CCNNGG	2 cut(s)	217, 336
BssSI	CACGAG	1 cut(s)	129
BssT1I	CCWWGG	1 cut(s)	217
Bst2BI	CACGAG	1 cut(s)	129
Bst4CI	ACNGT	5 cut(s)	430, 504, 653, 1090, 1184
BstBI	TTCGAA	1 cut(s)	1036
BstC8I	GCNNGC	1 cut(s)	540
BstDEI	CTNAG	4 cut(s)	481, 633, 639, 1053
BstF5I	GGATG	1 cut(s)	62
BstMAI	GTCTC	2 cut(s)	487, 942
BstMWI	GCNNNNNNNGC	1 cut(s)	611
BstNSI	RCATGY	3 cut(s)	308, 542, 813
BstSFI	CTRYAG	1 cut(s)	616
BstV2I	GAAGAC	1 cut(s)	785
BstX2I	RGATCY	2 cut(s)	349, 682
BstYI	RGATCY	2 cut(s)	349, 682
Bsu15I	ATCGAT	1 cut(s)	731
BsuRI	GGCC	1 cut(s)	854
BsuTUI	ATCGAT	1 cut(s)	731
BtsCI	GGATG	1 cut(s)	62
BtsIMutI	CAGTG	2 cut(s)	435, 500
Cac8I	GCNNGC	1 cut(s)	540
Cfr13I	GGNCC	1 cut(s)	508
ClaI	ATCGAT	1 cut(s)	731
Csp6I	GTAC	1 cut(s)	743
CspCI	CAANNNNNGTGG	4 cut(s)	485, 520, 844, 879
CviAII	CATG	3 cut(s)	305, 539, 810
CviJI	RGCY	7 cut(s)	122, 272, 605, 614, 773, 854, 1171
CviKI_1	RGCY	7 cut(s)	122, 272, 605, 614, 773, 854, 1171
CviQI	GTAC	1 cut(s)	743
DdeI	CTNAG	4 cut(s)	481, 633, 639, 1053
DraIII	CACNNNGTG	1 cut(s)	155
EaeI	YGGCCR	1 cut(s)	852
Ecl136II	GAGCTC	1 cut(s)	773
Eco130I	CCWWGG	1 cut(s)	217
Eco24I	GRGCYC	1 cut(s)	775
Eco47I	GGWCC	1 cut(s)	508
Eco53kI	GAGCTC	1 cut(s)	773
EcoICRI	GAGCTC	1 cut(s)	773
EcoT14I	CCWWGG	1 cut(s)	217
EcoT22I	ATGCAT	1 cut(s)	540
EcoT38I	GRGCYC	1 cut(s)	775
ErhI	CCWWGG	1 cut(s)	217
FaeI	CATG	3 cut(s)	308, 542, 813
FaqI	GGGAC	2 cut(s)	521, 1173
FatI	CATG	3 cut(s)	304, 538, 809
FokI	GGATG	1 cut(s)	49
FriOI	GRGCYC	1 cut(s)	775
FspBI	CTAG	1 cut(s)	552
GsuI	CTGGAG	1 cut(s)	59
HaeIII	GGCC	1 cut(s)	854
Hin1II	CATG	3 cut(s)	308, 542, 813
HincII	GTYRAC	2 cut(s)	709, 886
HindII	GTYRAC	2 cut(s)	709, 886
HinfI	GANTC	1 cut(s)	869
HpaI	GTTAAC	2 cut(s)	709, 886
HphI	GGTGA	4 cut(s)	138, 290, 352, 764
Hpy166II	GTNNAC	4 cut(s)	549, 709, 886, 1072
Hpy188I	TCNGA	4 cut(s)	195, 247, 640, 904
Hpy188III	TCNNGA	3 cut(s)	47, 353, 1158
Hpy8I	GTNNAC	4 cut(s)	549, 709, 886, 1072
HpyAV	CCTTC	5 cut(s)	340, 829, 1007, 1032, 1143
HpyCH4III	ACNGT	5 cut(s)	430, 504, 653, 1090, 1184
HpyCH4IV	ACGT	1 cut(s)	1142
HpyCH4V	TGCA	8 cut(s)	7, 310, 538, 737, 895, 976, 992, 1105
HpyF10VI	GCNNNNNNNGC	1 cut(s)	611
HpyF3I	CTNAG	4 cut(s)	481, 633, 639, 1053
HpySE526I	ACGT	1 cut(s)	1142
Hsp92II	CATG	3 cut(s)	308, 542, 813
KspAI	GTTAAC	2 cut(s)	709, 886
LmnI	GCTCC	1 cut(s)	399
MaeI	CTAG	1 cut(s)	552
MaeII	ACGT	1 cut(s)	1142
MaeIII	GTNAC	5 cut(s)	167, 296, 445, 587, 662
MboII	GAAGA	7 cut(s)	35, 332, 355, 377, 785, 891, 1022
MflI	RGATCY	2 cut(s)	349, 682
MhlI	GDGCHC	1 cut(s)	775
MlsI	TGGCCA	1 cut(s)	854
MluNI	TGGCCA	1 cut(s)	854
MnlI	CCTC	6 cut(s)	154, 181, 219, 331, 634, 825
Mox20I	TGGCCA	1 cut(s)	854
Mph1103I	ATGCAT	1 cut(s)	540
MroXI	GAANNNNTTC	1 cut(s)	1098
MscI	TGGCCA	1 cut(s)	854
MseI	TTAA	5 cut(s)	57, 669, 708, 885, 995
MslI	CAYNNNNRTG	1 cut(s)	303
Msp20I	TGGCCA	1 cut(s)	854
MwoI	GCNNNNNNNGC	1 cut(s)	611
NlaIII	CATG	3 cut(s)	308, 542, 813
NlaIV	GGNNCC	1 cut(s)	509
NmuCI	GTSAC	1 cut(s)	296
NsiI	ATGCAT	1 cut(s)	540
NspI	RCATGY	3 cut(s)	308, 542, 813
NspV	TTCGAA	1 cut(s)	1036
PaeI	GCATGC	1 cut(s)	542
PciI	ACATGT	1 cut(s)	809
PdmI	GAANNNNTTC	1 cut(s)	1098
PfeI	GAWTC	1 cut(s)	869
PflFI	GACNNNGTC	1 cut(s)	634
PscI	ACATGT	1 cut(s)	809
Psp124BI	GAGCTC	1 cut(s)	775
PspN4I	GGNNCC	1 cut(s)	509
PspPI	GGNCC	1 cut(s)	508
PsrI	GAACNNNNNNTAC	2 cut(s)	1083, 1115
PsuI	RGATCY	2 cut(s)	349, 682
PsyI	GACNNNGTC	1 cut(s)	634
RsaI	GTAC	1 cut(s)	744
RsaNI	GTAC	1 cut(s)	743
RseI	CAYNNNNRTG	1 cut(s)	303
SacI	GAGCTC	1 cut(s)	775
SaqAI	TTAA	5 cut(s)	57, 669, 708, 885, 995
Sau96I	GGNCC	1 cut(s)	508
SduI	GDGCHC	1 cut(s)	775
SfcI	CTRYAG	1 cut(s)	616
SfuI	TTCGAA	1 cut(s)	1036
SinI	GGWCC	1 cut(s)	508
SmiMI	CAYNNNNRTG	1 cut(s)	303
SpeI	ACTAGT	1 cut(s)	551
SphI	GCATGC	1 cut(s)	542
SsiI	CCGC	1 cut(s)	542
SspMI	CTAG	1 cut(s)	552
SstI	GAGCTC	1 cut(s)	775
StyI	CCWWGG	1 cut(s)	217
TaaI	ACNGT	5 cut(s)	430, 504, 653, 1090, 1184
TaiI	ACGT	1 cut(s)	1145
TaqI	TCGA	6 cut(s)	256, 363, 731, 763, 799, 1036
TatI	WGTACW	1 cut(s)	742
TfiI	GAWTC	1 cut(s)	869
Tru1I	TTAA	5 cut(s)	57, 669, 708, 885, 995
Tru9I	TTAA	5 cut(s)	57, 669, 708, 885, 995
TscAI	CASTG	2 cut(s)	435, 507
TseFI	GTSAC	1 cut(s)	296
Tsp45I	GTSAC	1 cut(s)	296
TspDTI	ATGAA	5 cut(s)	264, 731, 785, 935, 1164
TspGWI	ACGGA	2 cut(s)	855, 930
TspRI	CASTG	2 cut(s)	435, 507
Tth111I	GACNNNGTC	1 cut(s)	634
VpaK11BI	GGWCC	1 cut(s)	508
XapI	RAATTY	4 cut(s)	135, 283, 846, 1136
XceI	RCATGY	3 cut(s)	308, 542, 813
XmnI	GAANNNNTTC	1 cut(s)	1098
XspI	CTAG	1 cut(s)	552
Zsp2I	ATGCAT	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.