Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019006.1

Orthogroup ID

OG0002400

Physical Location & Seq

Genomic Coordinates Reverse (-)

15870 .. 16988

Gene Structure 1119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019006.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

atggttactttgaaaacacctgaaaaagaaaatgggtttcgtcccaattttaagaggcctagagtttatacagttcgagatttccctgaaggttgtggacgatttgtggctccagtgcagccaagtgaatgtgaagagggtgatgaagatatgaacacattagcaaggaacaattgctccctgcctagtcctcgagttgatcttgatgttgttcgagattttcctaaaggttgtgggccgacggtagtttcttctttgaaagatgctgaagagaagagtttggttccagacgttaaagaatgcgagcagcgtgttgttggtcacaagttgagtgttgcaagtgtggttgataaagctcataacaaggcaaagaaagctttggctgcatatcaagaaaagagtttggttccagacgtcaaggataaagaatgcgagcagcgtgttgttggtcacaagttgagtgttgcaagtgtggttgataaagctcataacaaggtgaagaaagctttggctgcatatcaagagactttgagtgagatgggtggagaatgcgatgctaatttcaacagactaaagggttggaaattgtatgttgaagcagcaatgtatcttaagaagagacataaatgggttaacaacacaaagaaacaaacaggggacattccaggagtgaaggttggtgacaagtttcggtatagacctgaattagctattgttggtcttcatagtcactttcaatgcggtattgattatatgacacaggacggggaaatgattgccacaagtattgttgaatctggccgctatgcgaacgagacagaatcacctgatgtcatgatatacacaggtcaaggtggaaatccaaaggtttcaaaaggggaaccaatagatcaaaagcccgaccgtggaaaccgtgcactgatgaatagcaaggcagcaggaaatcctgtgagggtaatccggagctataaatttcgggaggaatctggttatgtttatgatggtctctacattgttgatgatttttggcgagaaagaggggtttatggtaaatttgtgtttagattttcgttgaggaggatttcgggtcaaccaaaactcacagtttgcaacagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

372

Amino Acids

41.74

Weight (kDa)

9.06

Isoelectric Point (pI)

32.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002400)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24480 FvH4_2g24480 FvH4_7g03510 FvH4_7g26750 FvH4_7g26780 FvH4_7g26780 FvH4_7g26780
pyrus_communis	pycom07g04430
rosa_chinensis	RchiOBHm_Chr1g0325811 RchiOBHm_Chr1g0373401 RchiOBHm_Chr6g0292341
rosa_laevigata	RLG00000012041 RLG00000026824 RLG00000030101
rosa_multiflora	Rmu_sc0001354.1_g000005 Rmu_sc0017023.1_g000001 Rmu_sc0019006.1_g000003
rosa_roxburghii	Rroxscaffold_4G00284230 Rroxscaffold_4G00324280
rosa_rugosa	Rorug01G0055100 Rorug01G0055200 Rorug01G0377500 Rorug06G0225500
rosa_samantha	Rh1AG071400 Rh1AG071500 Rh1AG386600 Rh1BG058400 Rh1BG350600 Rh1BG350700 Rh1BG350900 Rh1CG070900 Rh1CG363700 Rh1DG075600 Rh1DG075700 Rh1DG381400 Rh6AG338900 Rh6BG346000 Rh6CG353100 Rh6DG339000
rosa_wichuraiana	Rw1G005820 Rw1G034860 Rw6G029500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	417
AccIII	TCCGGA	1 cut(s)	960
AciI	CCGC	2 cut(s)	741, 802
AcoI	YGGCCR	1 cut(s)	799
AcsI	RAATTY	2 cut(s)	971, 1052
AcuI	CTGAAG	2 cut(s)	108, 288
AcyI	GRCGYC	1 cut(s)	414
AfiI	CCNNNNNNNGG	1 cut(s)	905
AflII	CTTAAG	1 cut(s)	611
AgsI	TTSAA	7 cut(s)	13, 259, 565, 596, 737, 794, 873
AjnI	CCWGG	1 cut(s)	664
AjuI	GAANNNNNNNTTGG	2 cut(s)	491, 523
AloI	GAACNNNNNNTCC	2 cut(s)	161, 193
AluBI	AGCT	6 cut(s)	356, 377, 485, 506, 710, 966
AluI	AGCT	6 cut(s)	356, 377, 485, 506, 710, 966
Alw21I	GWGCWC	1 cut(s)	919
Alw26I	GTCTC	4 cut(s)	518, 613, 809, 1010
Alw44I	GTGCAC	1 cut(s)	915
Ama87I	CYCGRG	1 cut(s)	192
Aor13HI	TCCGGA	1 cut(s)	960
AoxI	GGCC	3 cut(s)	56, 236, 799
ApaLI	GTGCAC	1 cut(s)	915
ApeKI	GCWGC	7 cut(s)	118, 307, 383, 436, 512, 599, 935
ApoI	RAATTY	2 cut(s)	971, 1052
AspS9I	GGNCC	1 cut(s)	236
AsuHPI	GGTGA	4 cut(s)	152, 508, 692, 816
AvaI	CYCGRG	1 cut(s)	192
BaeGI	GKGCMC	1 cut(s)	919
BbsI	GAAGAC	1 cut(s)	713
Bbv12I	GWGCWC	1 cut(s)	919
BbvI	GCAGC	7 cut(s)	130, 319, 370, 448, 499, 611, 947
BccI	CCATC	2 cut(s)	532, 995
BciT130I	CCWGG	1 cut(s)	666
BcoDI	GTCTC	4 cut(s)	518, 613, 809, 1010
BfaI	CTAG	2 cut(s)	60, 186
BfrI	CTTAAG	1 cut(s)	611
BisI	GCNGC	8 cut(s)	119, 308, 384, 437, 513, 600, 802, 936
BlsI	GCNGC	8 cut(s)	120, 309, 385, 438, 514, 601, 803, 937
Bme1390I	CCNGG	1 cut(s)	666
BmeT110I	CYCGRG	1 cut(s)	192
BmgT120I	GGNCC	1 cut(s)	236
BmiI	GGNNCC	4 cut(s)	111, 285, 408, 882
BmrFI	CCNGG	1 cut(s)	666
BmsI	GCATC	2 cut(s)	253, 544
BpiI	GAAGAC	1 cut(s)	713
BpmI	CTGGAG	1 cut(s)	96
BsaHI	GRCGYC	1 cut(s)	414
BsaI	GGTCTC	1 cut(s)	1010
BsaJI	CCNNGG	1 cut(s)	904
BsaWI	WCCGGW	1 cut(s)	960
BsaXI	ACNNNNNCTCC	4 cut(s)	161, 191, 660, 690
Bsc4I	CCNNNNNNNGG	1 cut(s)	905
Bse1I	ACTGG	1 cut(s)	113
Bse3DI	GCAATG	1 cut(s)	609
BseAI	TCCGGA	1 cut(s)	960
BseBI	CCWGG	1 cut(s)	666
BseDI	CCNNGG	1 cut(s)	904
BseLI	CCNNNNNNNGG	1 cut(s)	905
BseMI	GCAATG	1 cut(s)	609
BseNI	ACTGG	1 cut(s)	113
BseRI	GAGGAG	1 cut(s)	1090
BseSI	GKGCMC	1 cut(s)	919
BseXI	GCAGC	7 cut(s)	130, 319, 370, 448, 499, 611, 947
BsgI	GTGCAG	1 cut(s)	137
Bsh1285I	CGRYCG	1 cut(s)	904
BshFI	GGCC	3 cut(s)	58, 238, 801
BsiEI	CGRYCG	1 cut(s)	904
BsiHKAI	GWGCWC	1 cut(s)	919
BsiHKCI	CYCGRG	1 cut(s)	192
BsiSI	CCGG	1 cut(s)	961
BslFI	GGGAC	2 cut(s)	27, 671
BslI	CCNNNNNNNGG	1 cut(s)	905
BsmAI	GTCTC	4 cut(s)	518, 613, 809, 1010
BsmFI	GGGAC	2 cut(s)	27, 671
BsmI	GAATGC	3 cut(s)	305, 434, 554
BsnI	GGCC	3 cut(s)	58, 238, 801
Bso31I	GGTCTC	1 cut(s)	1010
BsoBI	CYCGRG	1 cut(s)	192
Bsp1286I	GDGCHC	1 cut(s)	919
Bsp13I	TCCGGA	1 cut(s)	960
Bsp143I	GATC	2 cut(s)	199, 889
BspACI	CCGC	2 cut(s)	741, 802
BspANI	GGCC	3 cut(s)	58, 238, 801
BspEI	TCCGGA	1 cut(s)	960
BspHI	TCATGA	1 cut(s)	834
BspLI	GGNNCC	4 cut(s)	111, 285, 408, 882
BspTI	CTTAAG	1 cut(s)	611
BspTNI	GGTCTC	1 cut(s)	1010
BsrDI	GCAATG	1 cut(s)	609
BsrI	ACTGG	1 cut(s)	113
BssECI	CCNNGG	1 cut(s)	904
BssMI	GATC	2 cut(s)	199, 889
BssNI	GRCGYC	1 cut(s)	414
Bst2UI	CCWGG	1 cut(s)	666
Bst4CI	ACNGT	6 cut(s)	73, 244, 905, 914, 1105, 1115
Bst6I	CTCTTC	4 cut(s)	129, 264, 269, 611
BstACI	GRCGYC	1 cut(s)	414
BstAFI	CTTAAG	1 cut(s)	611
BstC8I	GCNNGC	2 cut(s)	305, 434
BstDSI	CCRYGG	1 cut(s)	904
BstKTI	GATC	2 cut(s)	202, 892
BstMAI	GTCTC	4 cut(s)	518, 613, 809, 1010
BstMBI	GATC	2 cut(s)	199, 889
BstMCI	CGRYCG	1 cut(s)	904
BstMWI	GCNNNNNNNGC	3 cut(s)	374, 383, 512
BstNI	CCWGG	1 cut(s)	666
BstSCI	CCNGG	1 cut(s)	664
BstSLI	GKGCMC	1 cut(s)	919
BstV1I	GCAGC	7 cut(s)	130, 319, 370, 448, 499, 611, 947
BstV2I	GAAGAC	1 cut(s)	713
BsuRI	GGCC	3 cut(s)	58, 238, 801
BtgI	CCRYGG	1 cut(s)	904
BtgZI	GCGATG	1 cut(s)	567
BtsIMutI	CAGTG	2 cut(s)	120, 917
Cac8I	GCNNGC	2 cut(s)	305, 434
CciI	TCATGA	1 cut(s)	834
Cfr13I	GGNCC	1 cut(s)	236
CspCI	CAANNNNNGTGG	2 cut(s)	769, 804
CviAII	CATG	1 cut(s)	835
DpnI	GATC	2 cut(s)	201, 891
DpnII	GATC	2 cut(s)	199, 889
EaeI	YGGCCR	1 cut(s)	799
Eam1104I	CTCTTC	4 cut(s)	129, 264, 269, 611
EarI	CTCTTC	4 cut(s)	129, 264, 269, 611
Eco147I	AGGCCT	1 cut(s)	58
Eco31I	GGTCTC	1 cut(s)	1010
Eco57I	CTGAAG	2 cut(s)	108, 288
Eco88I	CYCGRG	1 cut(s)	192
EcoRII	CCWGG	1 cut(s)	664
FaeI	CATG	1 cut(s)	838
FaqI	GGGAC	2 cut(s)	27, 671
FatI	CATG	1 cut(s)	834
Fnu4HI	GCNGC	8 cut(s)	119, 308, 384, 437, 513, 600, 802, 936
Fsp4HI	GCNGC	8 cut(s)	119, 308, 384, 437, 513, 600, 802, 936
FspBI	CTAG	2 cut(s)	60, 186
GluI	GCNGC	8 cut(s)	119, 308, 384, 437, 513, 600, 802, 936
GsuI	CTGGAG	1 cut(s)	96
HaeIII	GGCC	3 cut(s)	58, 238, 801
HapII	CCGG	1 cut(s)	961
Hin1I	GRCGYC	1 cut(s)	414
Hin1II	CATG	1 cut(s)	838
HincII	GTYRAC	2 cut(s)	634, 1091
HindII	GTYRAC	2 cut(s)	634, 1091
HindIII	AAGCTT	2 cut(s)	375, 504
HinfI	GANTC	3 cut(s)	794, 821, 983
HpaI	GTTAAC	1 cut(s)	634
HpaII	CCGG	1 cut(s)	961
HphI	GGTGA	4 cut(s)	152, 508, 692, 816
Hpy166II	GTNNAC	4 cut(s)	98, 634, 917, 1091
Hpy8I	GTNNAC	4 cut(s)	98, 634, 917, 1091
Hpy99I	CGWCG	1 cut(s)	244
HpyAV	CCTTC	2 cut(s)	83, 667
HpyCH4III	ACNGT	6 cut(s)	73, 244, 905, 914, 1105, 1115
HpyCH4IV	ACGT	2 cut(s)	291, 414
HpyCH4V	TGCA	7 cut(s)	118, 338, 386, 467, 515, 917, 1110
HpyF10VI	GCNNNNNNNGC	3 cut(s)	374, 383, 512
HpySE526I	ACGT	2 cut(s)	291, 414
Hsp92I	GRCGYC	1 cut(s)	414
Hsp92II	CATG	1 cut(s)	838
Kpn2I	TCCGGA	1 cut(s)	960
KspAI	GTTAAC	1 cut(s)	634
Kzo9I	GATC	2 cut(s)	199, 889
LmnI	GCTCC	3 cut(s)	115, 182, 963
Lsp1109I	GCAGC	7 cut(s)	130, 319, 370, 448, 499, 611, 947
LweI	GCATC	2 cut(s)	253, 544
MaeI	CTAG	2 cut(s)	60, 186
MaeII	ACGT	2 cut(s)	291, 414
MaeIII	GTNAC	5 cut(s)	4, 320, 449, 680, 728
MalI	GATC	2 cut(s)	201, 891
MboI	GATC	2 cut(s)	199, 889
MboII	GAAGA	8 cut(s)	146, 158, 243, 281, 286, 511, 628, 713
MfeI	CAATTG	1 cut(s)	172
MhlI	GDGCHC	1 cut(s)	919
MluCI	AATT	7 cut(s)	46, 172, 559, 584, 704, 971, 1052
MmeI	TCCRAC	1 cut(s)	560
MnlI	CCTC	8 cut(s)	48, 130, 201, 945, 973, 1031, 1068, 1071
MroI	TCCGGA	1 cut(s)	960
MseI	TTAA	5 cut(s)	51, 294, 612, 633, 1117
MspCI	CTTAAG	1 cut(s)	611
MspI	CCGG	1 cut(s)	961
MspR9I	CCNGG	1 cut(s)	666
MunI	CAATTG	1 cut(s)	172
Mva1269I	GAATGC	3 cut(s)	305, 434, 554
MvaI	CCWGG	1 cut(s)	666
MwoI	GCNNNNNNNGC	3 cut(s)	374, 383, 512
NdeII	GATC	2 cut(s)	199, 889
NlaIII	CATG	1 cut(s)	838
NlaIV	GGNNCC	4 cut(s)	111, 285, 408, 882
NmuCI	GTSAC	4 cut(s)	320, 449, 680, 728
PaeR7I	CTCGAG	1 cut(s)	192
PagI	TCATGA	1 cut(s)	834
PceI	AGGCCT	1 cut(s)	58
PctI	GAATGC	3 cut(s)	305, 434, 554
PfeI	GAWTC	3 cut(s)	794, 821, 983
PfoI	TCCNGGA	1 cut(s)	664
PkrI	GCNGC	8 cut(s)	120, 309, 385, 438, 514, 601, 803, 937
Psp6I	CCWGG	1 cut(s)	664
PspGI	CCWGG	1 cut(s)	664
PspN4I	GGNNCC	4 cut(s)	111, 285, 408, 882
PspPI	GGNCC	1 cut(s)	236
PspXI	VCTCGAGB	1 cut(s)	192
SaqAI	TTAA	5 cut(s)	51, 294, 612, 633, 1117
SatI	GCNGC	8 cut(s)	119, 308, 384, 437, 513, 600, 802, 936
Sau3AI	GATC	2 cut(s)	199, 889
Sau96I	GGNCC	1 cut(s)	236
ScrFI	CCNGG	1 cut(s)	666
SduI	GDGCHC	1 cut(s)	919
SfaNI	GCATC	2 cut(s)	253, 544
Sfr274I	CTCGAG	1 cut(s)	192
SlaI	CTCGAG	1 cut(s)	192
SmlI	CTYRAG	2 cut(s)	192, 611
SmoI	CTYRAG	2 cut(s)	192, 611
Sse9I	AATT	7 cut(s)	46, 172, 559, 584, 704, 971, 1052
SseBI	AGGCCT	1 cut(s)	58
SsiI	CCGC	2 cut(s)	741, 802
SspMI	CTAG	2 cut(s)	60, 186
StuI	AGGCCT	1 cut(s)	58
StyD4I	CCNGG	1 cut(s)	664
TaaI	ACNGT	6 cut(s)	73, 244, 905, 914, 1105, 1115
TaiI	ACGT	2 cut(s)	294, 417
TaqI	TCGA	3 cut(s)	76, 193, 214
TasI	AATT	7 cut(s)	46, 172, 559, 584, 704, 971, 1052
TauI	GCSGC	1 cut(s)	804
TfiI	GAWTC	3 cut(s)	794, 821, 983
Tru1I	TTAA	5 cut(s)	51, 294, 612, 633, 1117
Tru9I	TTAA	5 cut(s)	51, 294, 612, 633, 1117
TscAI	CASTG	2 cut(s)	120, 924
TseFI	GTSAC	4 cut(s)	320, 449, 680, 728
TseI	GCWGC	7 cut(s)	118, 307, 383, 436, 512, 599, 935
Tsp45I	GTSAC	4 cut(s)	320, 449, 680, 728
TspDTI	ATGAA	4 cut(s)	159, 167, 713, 938
TspRI	CASTG	2 cut(s)	120, 924
Vha464I	CTTAAG	1 cut(s)	611
VneI	GTGCAC	1 cut(s)	915
XapI	RAATTY	2 cut(s)	971, 1052
XhoI	CTCGAG	1 cut(s)	192
XspI	CTAG	2 cut(s)	60, 186
ZraI	GACGTC	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.