Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002400

Physical Location & Seq

Genomic Coordinates Reverse (-)

11969496 .. 11969810

Gene Structure 315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG071500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGCCATAGTGAAAGTACATGGAACAATACACCATGGTTGCTTTATTCCCCTGAAGAGGGCAAGAGTTGATGTTATTCGACACCTTCCTAGAGGGCGCGGATCAAATGTTAGGCGGCAAAAGGGTGAATGCGAAGATCTTGATTATATCGTTGAACCTACTAATAAAGATGATGAACCTGCTGCGAAGATTGATAAGGTGTGTGCACCTCGTGAAAGGATTGATAAGGTACCATCGATCTTAATTTTAGTGTATGTATTAACGTTAACCCTATATATACCTAGAAAATTTTTACCATCAACTTTAGGTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

104

Amino Acids

11.78

Weight (kDa)

9.39

Isoelectric Point (pI)

33.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002400)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24480 FvH4_2g24480 FvH4_7g03510 FvH4_7g26750 FvH4_7g26780 FvH4_7g26780 FvH4_7g26780
pyrus_communis	pycom07g04430
rosa_chinensis	RchiOBHm_Chr1g0325811 RchiOBHm_Chr1g0373401 RchiOBHm_Chr6g0292341
rosa_laevigata	RLG00000012041 RLG00000026824 RLG00000030101
rosa_multiflora	Rmu_sc0001354.1_g000005 Rmu_sc0017023.1_g000001 Rmu_sc0019006.1_g000003
rosa_roxburghii	Rroxscaffold_4G00284230 Rroxscaffold_4G00324280
rosa_rugosa	Rorug01G0055100 Rorug01G0055200 Rorug01G0377500 Rorug06G0225500
rosa_samantha	Rh1AG071400 Rh1AG071500 Rh1AG386600 Rh1BG058400 Rh1BG350600 Rh1BG350700 Rh1BG350900 Rh1CG070900 Rh1CG363700 Rh1DG075600 Rh1DG075700 Rh1DG381400 Rh6AG338900 Rh6BG346000 Rh6CG353100 Rh6DG339000
rosa_wichuraiana	Rw1G005820 Rw1G034860 Rw6G029500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	187
Acc65I	GGTACC	1 cut(s)	229
AccB1I	GGYRCC	1 cut(s)	229
AccII	CGCG	1 cut(s)	99
AciI	CCGC	2 cut(s)	99, 115
AclI	AACGTT	1 cut(s)	263
AclWI	GGATC	1 cut(s)	109
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	287
AcuI	CTGAAG	1 cut(s)	74
AdeI	CACNNNGTG	1 cut(s)	212
AfaI	GTAC	2 cut(s)	18, 231
AfiI	CCNNNNNNNGG	2 cut(s)	57, 58
AgsI	TTSAA	1 cut(s)	155
Alw21I	GWGCWC	1 cut(s)	208
Alw44I	GTGCAC	1 cut(s)	204
AlwI	GGATC	1 cut(s)	109
AoxI	GGCC	1 cut(s)	3
ApaLI	GTGCAC	1 cut(s)	204
ApeKI	GCWGC	1 cut(s)	182
ApoI	RAATTY	1 cut(s)	287
Asp718I	GGTACC	1 cut(s)	229
AspLEI	GCGC	1 cut(s)	99
AsuHPI	GGTGA	1 cut(s)	137
BaeGI	GKGCMC	1 cut(s)	208
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	229
BauI	CACGAG	1 cut(s)	210
Bbv12I	GWGCWC	1 cut(s)	208
BbvI	GCAGC	1 cut(s)	169
BccI	CCATC	2 cut(s)	241, 304
BfaI	CTAG	2 cut(s)	90, 282
BfuAI	ACCTGC	1 cut(s)	187
BglII	AGATCT	1 cut(s)	136
BisI	GCNGC	2 cut(s)	116, 183
BlsI	GCNGC	2 cut(s)	117, 184
BmiI	GGNNCC	1 cut(s)	231
Bsa29I	ATCGAT	1 cut(s)	236
BsaJI	CCNNGG	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	2 cut(s)	57, 58
BseCI	ATCGAT	1 cut(s)	236
BseDI	CCNNGG	1 cut(s)	34
BseLI	CCNNNNNNNGG	2 cut(s)	57, 58
BseSI	GKGCMC	1 cut(s)	208
BseXI	GCAGC	1 cut(s)	169
Bsh1236I	CGCG	1 cut(s)	99
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	229
BshVI	ATCGAT	1 cut(s)	236
BsiHKAI	GWGCWC	1 cut(s)	208
BslI	CCNNNNNNNGG	2 cut(s)	57, 58
BsmI	GAATGC	1 cut(s)	134
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	208
Bsp143I	GATC	3 cut(s)	101, 136, 237
Bsp19I	CCATGG	1 cut(s)	34
BspACI	CCGC	2 cut(s)	99, 115
BspANI	GGCC	1 cut(s)	5
BspDI	ATCGAT	1 cut(s)	236
BspFNI	CGCG	1 cut(s)	99
BspLI	GGNNCC	1 cut(s)	231
BspMI	ACCTGC	1 cut(s)	187
BspPI	GGATC	1 cut(s)	109
BspT107I	GGYRCC	1 cut(s)	229
BssECI	CCNNGG	1 cut(s)	34
BssMI	GATC	3 cut(s)	101, 136, 237
BssSI	CACGAG	1 cut(s)	210
BssT1I	CCWWGG	1 cut(s)	34
Bst2BI	CACGAG	1 cut(s)	210
Bst6I	CTCTTC	1 cut(s)	50
BstDSI	CCRYGG	1 cut(s)	34
BstFNI	CGCG	1 cut(s)	99
BstHHI	GCGC	1 cut(s)	99
BstKTI	GATC	3 cut(s)	104, 139, 240
BstMBI	GATC	3 cut(s)	101, 136, 237
BstSLI	GKGCMC	1 cut(s)	208
BstUI	CGCG	1 cut(s)	99
BstV1I	GCAGC	1 cut(s)	169
BstX2I	RGATCY	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	136
Bsu15I	ATCGAT	1 cut(s)	236
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	236
BtgI	CCRYGG	1 cut(s)	34
BveI	ACCTGC	1 cut(s)	187
CfoI	GCGC	1 cut(s)	99
ClaI	ATCGAT	1 cut(s)	236
Csp6I	GTAC	2 cut(s)	17, 230
CviAII	CATG	2 cut(s)	20, 35
CviJI	RGCY	1 cut(s)	5
CviKI_1	RGCY	1 cut(s)	5
CviQI	GTAC	2 cut(s)	17, 230
DpnI	GATC	3 cut(s)	103, 138, 239
DpnII	GATC	3 cut(s)	101, 136, 237
DraIII	CACNNNGTG	1 cut(s)	212
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
Eco130I	CCWWGG	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	74
EcoT14I	CCWWGG	1 cut(s)	34
ErhI	CCWWGG	1 cut(s)	34
FaeI	CATG	2 cut(s)	23, 38
FaiI	YATR	8 cut(s)	8, 21, 36, 147, 255, 274, 276, 278
FatI	CATG	2 cut(s)	19, 34
Fnu4HI	GCNGC	2 cut(s)	116, 183
Fsp4HI	GCNGC	2 cut(s)	116, 183
FspBI	CTAG	2 cut(s)	90, 282
GlaI	GCGC	1 cut(s)	98
GluI	GCNGC	2 cut(s)	116, 183
HaeIII	GGCC	1 cut(s)	5
HhaI	GCGC	1 cut(s)	99
Hin1II	CATG	2 cut(s)	23, 38
Hin6I	GCGC	1 cut(s)	97
HinP1I	GCGC	1 cut(s)	97
HincII	GTYRAC	1 cut(s)	267
HindII	GTYRAC	1 cut(s)	267
HpaI	GTTAAC	1 cut(s)	267
HphI	GGTGA	1 cut(s)	137
Hpy166II	GTNNAC	2 cut(s)	206, 267
Hpy188III	TCNNGA	2 cut(s)	140, 212
Hpy8I	GTNNAC	2 cut(s)	206, 267
HpyAV	CCTTC	1 cut(s)	95
HpyCH4IV	ACGT	1 cut(s)	263
HpyCH4V	TGCA	1 cut(s)	206
HpySE526I	ACGT	1 cut(s)	263
Hsp92II	CATG	2 cut(s)	23, 38
HspAI	GCGC	1 cut(s)	97
KpnI	GGTACC	1 cut(s)	233
KspAI	GTTAAC	1 cut(s)	267
Kzo9I	GATC	3 cut(s)	101, 136, 237
LpnPI	CCDG	2 cut(s)	65, 192
Lsp1109I	GCAGC	1 cut(s)	169
MaeI	CTAG	2 cut(s)	90, 282
MaeII	ACGT	1 cut(s)	263
MalI	GATC	3 cut(s)	103, 138, 239
MboI	GATC	3 cut(s)	101, 136, 237
MboII	GAAGA	3 cut(s)	67, 146, 199
MflI	RGATCY	1 cut(s)	136
MhlI	GDGCHC	1 cut(s)	208
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	243, 287
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	3 cut(s)	51, 86, 219
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	242, 260, 266
Msp20I	TGGCCA	1 cut(s)	5
Mva1269I	GAATGC	1 cut(s)	134
MvnI	CGCG	1 cut(s)	99
NcoI	CCATGG	1 cut(s)	34
NdeII	GATC	3 cut(s)	101, 136, 237
NlaIII	CATG	2 cut(s)	23, 38
NlaIV	GGNNCC	1 cut(s)	231
PctI	GAATGC	1 cut(s)	134
PkrI	GCNGC	2 cut(s)	117, 184
Psp1406I	AACGTT	1 cut(s)	263
PspN4I	GGNNCC	1 cut(s)	231
PsuI	RGATCY	1 cut(s)	136
RsaI	GTAC	2 cut(s)	18, 231
RsaNI	GTAC	2 cut(s)	17, 230
SaqAI	TTAA	3 cut(s)	242, 260, 266
SatI	GCNGC	2 cut(s)	116, 183
Sau3AI	GATC	3 cut(s)	101, 136, 237
SduI	GDGCHC	1 cut(s)	208
SetI	ASST	9 cut(s)	87, 160, 181, 201, 211, 231, 266, 283, 310
Sse9I	AATT	2 cut(s)	243, 287
SsiI	CCGC	2 cut(s)	99, 115
SspMI	CTAG	2 cut(s)	90, 282
StyI	CCWWGG	1 cut(s)	34
TaiI	ACGT	1 cut(s)	266
TaqI	TCGA	2 cut(s)	79, 236
TasI	AATT	2 cut(s)	243, 287
TatI	WGTACW	1 cut(s)	16
TauI	GCSGC	1 cut(s)	118
Tru1I	TTAA	3 cut(s)	242, 260, 266
Tru9I	TTAA	3 cut(s)	242, 260, 266
TseI	GCWGC	1 cut(s)	182
TspDTI	ATGAA	1 cut(s)	189
VneI	GTGCAC	1 cut(s)	204
XapI	RAATTY	1 cut(s)	287
XspI	CTAG	2 cut(s)	90, 282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.