Rorug01G0055200

histone-lysine N-methyltransferase, H3 lysine-9 specific

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0002400
Physical Location & Seq
Reverse (-)
9044720 .. 9045447
728 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0055200.1

Sequence Viewer

Length: 330 bp
ATGGATCAAGAGGTACAGGGAAGAGAGGAGTTGCTATTCCATCAACCTCAGCCTCAGGATGACCGCTGCTCTTCAGCACTGCGGTCATGGGCATCCCAAGAGCTGGAAGCTGTTCTGCAAACCAATAGCACTAATGATGATTGTAGTGAGTTGCAATCACCATTTGGAGTTGGTGATTCTTGTCTTCTAGACGGGAACGAAGTTTCAACCTGTGATGAATATGAGACTCTGTATGATGTGTTTCCACAGCTATGTGATCTGCCGGAAGAAAATCTGGATTCACTCTTACGTCCACCTCAACAACAAGATTACCGCCTCTCCATACTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 ko04211 map00310 map04211
Pfam Domains
Protein Families
Pre-SET SAD_SRA SET

Protein Analysis

109

Amino Acids

12.4

Weight (kDa)

4.05

Isoelectric Point (pI)

81.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 103
AciI CCGC 3 cut(s) 64, 82, 313
AclWI GGATC 1 cut(s) 12
AcuI CTGAAG 1 cut(s) 57
AfaI GTAC 1 cut(s) 15
AfiI CCNNNNNNNGG 1 cut(s) 103
AgsI TTSAA 1 cut(s) 207
AluBI AGCT 3 cut(s) 103, 110, 250
AluI AGCT 3 cut(s) 103, 110, 250
Alw26I GTCTC 1 cut(s) 218
AlwI GGATC 1 cut(s) 12
ApeKI GCWGC 1 cut(s) 66
Asp700I GAANNNNTTC 1 cut(s) 111
AsuHPI GGTGA 2 cut(s) 150, 185
AxyI CCTNAGG 1 cut(s) 54
BbsI GAAGAC 1 cut(s) 176
BbvCI CCTCAGC 1 cut(s) 48
BbvI GCAGC 1 cut(s) 53
BccI CCATC 1 cut(s) 48
BcoDI GTCTC 1 cut(s) 218
BfaI CTAG 1 cut(s) 188
BfmI CTRYAG 1 cut(s) 326
BisI GCNGC 1 cut(s) 67
BlsI GCNGC 1 cut(s) 68
BmsI GCATC 1 cut(s) 101
BpiI GAAGAC 1 cut(s) 176
Bpu10I CCTNAGC 1 cut(s) 48
BsaXI ACNNNNNCTCC 1 cut(s) 302
Bsc4I CCNNNNNNNGG 1 cut(s) 103
Bse21I CCTNAGG 1 cut(s) 54
BseGI GGATG 2 cut(s) 64, 92
BseLI CCNNNNNNNGG 1 cut(s) 103
BseMII CTCAG 2 cut(s) 62, 68
BseRI GAGGAG 1 cut(s) 41
BseXI GCAGC 1 cut(s) 53
BsiSI CCGG 1 cut(s) 263
BslI CCNNNNNNNGG 1 cut(s) 103
BsmAI GTCTC 1 cut(s) 218
Bsp143I GATC 2 cut(s) 4, 256
BspACI CCGC 3 cut(s) 64, 82, 313
BspCNI CTCAG 2 cut(s) 61, 67
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 76
BssMI GATC 2 cut(s) 4, 256
Bst4CI ACNGT 1 cut(s) 327
Bst6I CTCTTC 2 cut(s) 16, 76
BstDEI CTNAG 2 cut(s) 48, 54
BstF5I GGATG 2 cut(s) 64, 92
BstKTI GATC 2 cut(s) 7, 259
BstMAI GTCTC 1 cut(s) 218
BstMBI GATC 2 cut(s) 4, 256
BstSFI CTRYAG 1 cut(s) 326
BstV1I GCAGC 1 cut(s) 53
BstV2I GAAGAC 1 cut(s) 176
Bsu36I CCTNAGG 1 cut(s) 54
BtsCI GGATG 2 cut(s) 64, 92
BtsI GCAGTG 1 cut(s) 77
BtsIMutI CAGTG 1 cut(s) 77
Csp6I GTAC 1 cut(s) 14
CviAII CATG 1 cut(s) 87
CviJI RGCY 4 cut(s) 52, 103, 110, 250
CviKI_1 RGCY 4 cut(s) 52, 103, 110, 250
CviQI GTAC 1 cut(s) 14
DdeI CTNAG 2 cut(s) 48, 54
DpnI GATC 2 cut(s) 6, 258
DpnII GATC 2 cut(s) 4, 256
Eam1104I CTCTTC 2 cut(s) 16, 76
EarI CTCTTC 2 cut(s) 16, 76
Eco57I CTGAAG 1 cut(s) 57
Eco81I CCTNAGG 1 cut(s) 54
FaeI CATG 1 cut(s) 90
FaiI YATR 5 cut(s) 88, 222, 234, 253, 323
FatI CATG 1 cut(s) 86
Fnu4HI GCNGC 1 cut(s) 67
FokI GGATG 2 cut(s) 71, 79
Fsp4HI GCNGC 1 cut(s) 67
FspBI CTAG 1 cut(s) 188
GluI GCNGC 1 cut(s) 67
HapII CCGG 1 cut(s) 263
Hin1II CATG 1 cut(s) 90
HinfI GANTC 3 cut(s) 176, 226, 278
HpaII CCGG 1 cut(s) 263
HphI GGTGA 2 cut(s) 150, 185
Hpy166II GTNNAC 1 cut(s) 293
Hpy188III TCNNGA 4 cut(s) 8, 56, 188, 275
Hpy8I GTNNAC 1 cut(s) 293
HpyCH4III ACNGT 1 cut(s) 327
HpyCH4IV ACGT 1 cut(s) 289
HpyCH4V TGCA 2 cut(s) 118, 154
HpyF3I CTNAG 2 cut(s) 48, 54
HpySE526I ACGT 1 cut(s) 289
Hsp92II CATG 1 cut(s) 90
Kzo9I GATC 2 cut(s) 4, 256
LguI GCTCTTC 1 cut(s) 76
LpnPI CCDG 6 cut(s) 2, 41, 89, 223, 260, 276
Lsp1109I GCAGC 1 cut(s) 53
LweI GCATC 1 cut(s) 101
MaeI CTAG 1 cut(s) 188
MaeII ACGT 1 cut(s) 289
MalI GATC 2 cut(s) 6, 258
MboI GATC 2 cut(s) 4, 256
MboII GAAGA 4 cut(s) 33, 63, 176, 278
MlyI GAGTC 1 cut(s) 220
MnlI CCTC 6 cut(s) 4, 19, 57, 63, 306, 326
MroXI GAANNNNTTC 1 cut(s) 111
MslI CAYNNNNRTG 1 cut(s) 250
MspA1I CMGCKG 1 cut(s) 66
MspI CCGG 1 cut(s) 263
NdeII GATC 2 cut(s) 4, 256
NlaIII CATG 1 cut(s) 90
PciSI GCTCTTC 1 cut(s) 76
PdmI GAANNNNTTC 1 cut(s) 111
PfeI GAWTC 2 cut(s) 176, 278
PflMI CCANNNNNTGG 1 cut(s) 103
PkrI GCNGC 1 cut(s) 68
PleI GAGTC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 220
RsaI GTAC 1 cut(s) 15
RsaNI GTAC 1 cut(s) 14
RseI CAYNNNNRTG 1 cut(s) 250
SapI GCTCTTC 1 cut(s) 76
SatI GCNGC 1 cut(s) 67
Sau3AI GATC 2 cut(s) 4, 256
SchI GAGTC 1 cut(s) 220
SetI ASST 8 cut(s) 15, 49, 105, 112, 212, 252, 292, 298
SfaNI GCATC 1 cut(s) 101
SfcI CTRYAG 1 cut(s) 326
SmiMI CAYNNNNRTG 1 cut(s) 250
SsiI CCGC 3 cut(s) 64, 82, 313
SspMI CTAG 1 cut(s) 188
TaaI ACNGT 1 cut(s) 327
TaiI ACGT 1 cut(s) 292
TfiI GAWTC 2 cut(s) 176, 278
TscAI CASTG 1 cut(s) 84
TseI GCWGC 1 cut(s) 66
TspDTI ATGAA 1 cut(s) 231
TspRI CASTG 1 cut(s) 84
Van91I CCANNNNNTGG 1 cut(s) 103
XbaI TCTAGA 1 cut(s) 187
XmnI GAANNNNTTC 1 cut(s) 111
XspI CTAG 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.