Rh6DG339000

histone-lysine N-methyltransferase, H3 lysine-9 specific

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0002400
Physical Location & Seq
Reverse (-)
54295964 .. 54298182
2219 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG339000.1

Sequence Viewer

Length: 1308 bp
ATGGCTATCGTGAAAGTACGTGGAACCCTAAAAGACGGTTTATTTACTCCAAAATCGAAGAGGCCAAGAGTGGATGATTTTGGAAATTTTCCCAATGGGGGTGGATCATATAGAGTTATGGTGCAAAGTAGTGAAAGTGAAGATCACAATTCTCTACTTGATCGTGATTTGGTTAAATCATCAAAAAATCTCCAGCAAGGTAAGAGAAATGATGGGATTTCGCATTTTTCTATTACGGCTACACCACGAGAAATTTTGCCCTCACCACAGAGTGTATTGAAAAGTAACTCTGTAAAGAGCAAGGAGGATCGGAACACTAACCTATCAATCCGCCAAGGATTGAGGAAGCGACAGCCTTTGTCTGATGAATACCGACCTGAAAGGACGGCTGTATGTGGAAATTTTGATTTTAGTCACCAGCATGTGCATAATTTGGAAGATAAAGATAATACCGAGGTGAAGAAGGATCTTGATGTGATCGAAGATACTTTGGCCAACTCGAAGAAACAAAATTGGAGCAACGAATATCAGCACAAAGCCAACACAGTGTCCAAAAATGTTGTTACAACTTTTAATTCAAAAAATAGGCATTTCGTCTTGGGGAGAAAGAGACAACCACTGTGGGACCACCAGCAACCTTACCAGACGAGTATGCTTGCGAAGTTTACAAGTCAAAAGTCGGTGGAAGTGGAACATAAAGATCGTAACAAGGTCAAGGGGGCTTTGGAAGCCTATAGAGAGATATTGACTAAGTCCGAGGCACAAAACTGTAATTGGAGTTACATTAAAGCAGCAATGGATCTCAAAAAACAAGGAAAATGGGTTAACAAGATGAAGCAAGTAGGATCGATTGCAGGAGTAAAAATTGGTGATAGATTTCGACATAGAGCTCAACTAACCATTGTTGGTCTTCATCGACAATTTACATGTGGTATTGATTATATGTGGAGGAATGACGGAAAAATTTTGGCCACAAGTATTGTTGATTCTGGTCGCTATGTTAACAATTTGCAATCTTCTGATATACTGATCTACTCTGGTCAAGGTGGAAAGTCTCTGTTTCATAAAACTAAACCGACAGATCAAATAATGCAAGGTGGAAACCTTGCATTAAGGAATAGCAAAGAAGAAGGAACTCCTATAAGGGTAATTCGAAGGTTGAAACATTCTAAGGGTTCGTGTTATGTTTACTATGGATTATACACCGTAGAAAGAGTTATGCAAGAAAGACAACTTGGTATTATGATCTATAAATTTATGTTGAGAAGGAAGTCGGGACAACCAGAGCTTTCATTTGACAGTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 ko04211 map00310 map04211
Pfam Domains
Protein Families
Pre-SET SAD_SRA SET

Protein Analysis

435

Amino Acids

49.77

Weight (kDa)

9.88

Isoelectric Point (pI)

40.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAD_SRA PF02182 281 - 427 2.2e-40 SAD/SRA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 331
AclWI GGATC 5 cut(s) 112, 315, 474, 807, 853
AcoI YGGCCR 2 cut(s) 492, 969
AcsI RAATTY 5 cut(s) 85, 252, 400, 963, 1253
AdeI CACNNNGTG 1 cut(s) 272
AfaI GTAC 1 cut(s) 18
AfiI CCNNNNNNNGG 1 cut(s) 98
AflIII ACRYGT 1 cut(s) 926
AgsI TTSAA 3 cut(s) 280, 579, 1162
AjuI GAANNNNNNNTTGG 2 cut(s) 1218, 1250
AluBI AGCT 2 cut(s) 890, 1288
AluI AGCT 2 cut(s) 890, 1288
Alw21I GWGCWC 1 cut(s) 892
Alw26I GTCTC 2 cut(s) 604, 1059
AlwI GGATC 5 cut(s) 112, 315, 474, 807, 853
AoxI GGCC 3 cut(s) 62, 492, 969
ApeKI GCWGC 1 cut(s) 791
ApoI RAATTY 5 cut(s) 85, 252, 400, 963, 1253
AspS9I GGNCC 1 cut(s) 625
AsuHPI GGTGA 4 cut(s) 255, 407, 469, 881
AsuII TTCGAA 1 cut(s) 1153
AvaII GGWCC 1 cut(s) 625
BalI TGGCCA 2 cut(s) 494, 971
BanII GRGCYC 1 cut(s) 892
BauI CACGAG 1 cut(s) 246
BbsI GAAGAC 1 cut(s) 902
Bbv12I GWGCWC 1 cut(s) 892
BbvI GCAGC 1 cut(s) 803
BccI CCATC 1 cut(s) 206
BceAI ACGGC 2 cut(s) 252, 402
BcoDI GTCTC 2 cut(s) 604, 1059
BfmI CTRYAG 1 cut(s) 733
BisI GCNGC 1 cut(s) 792
BlsI GCNGC 1 cut(s) 793
Bme18I GGWCC 1 cut(s) 625
BmgT120I GGNCC 1 cut(s) 625
BmiI GGNNCC 2 cut(s) 25, 626
BpiI GAAGAC 1 cut(s) 902
BpmI CTGGAG 1 cut(s) 176
Bpu14I TTCGAA 1 cut(s) 1153
Bsa29I ATCGAT 1 cut(s) 848
BsaAI YACGTR 1 cut(s) 20
BsaJI CCNNGG 3 cut(s) 334, 453, 756
Bsc4I CCNNNNNNNGG 1 cut(s) 98
Bse3DI GCAATG 1 cut(s) 801
BseCI ATCGAT 1 cut(s) 848
BseDI CCNNGG 3 cut(s) 334, 453, 756
BseGI GGATG 1 cut(s) 79
BseLI CCNNNNNNNGG 1 cut(s) 98
BseMI GCAATG 1 cut(s) 801
BseXI GCAGC 1 cut(s) 803
BshFI GGCC 3 cut(s) 64, 494, 971
BshVI ATCGAT 1 cut(s) 848
BsiHKAI GWGCWC 1 cut(s) 892
BslFI GGGAC 2 cut(s) 638, 1290
BslI CCNNNNNNNGG 1 cut(s) 98
BsmAI GTCTC 2 cut(s) 604, 1059
BsmFI GGGAC 2 cut(s) 638, 1290
BsnI GGCC 3 cut(s) 64, 494, 971
Bsp119I TTCGAA 1 cut(s) 1153
Bsp1286I GDGCHC 1 cut(s) 892
BspACI CCGC 1 cut(s) 331
BspANI GGCC 3 cut(s) 64, 494, 971
BspDI ATCGAT 1 cut(s) 848
BspLI GGNNCC 2 cut(s) 25, 626
BspPI GGATC 5 cut(s) 112, 315, 474, 807, 853
BspT104I TTCGAA 1 cut(s) 1153
BsrDI GCAATG 1 cut(s) 801
BssECI CCNNGG 3 cut(s) 334, 453, 756
BssSI CACGAG 1 cut(s) 246
BssT1I CCWWGG 1 cut(s) 334
Bst2BI CACGAG 1 cut(s) 246
Bst4CI ACNGT 6 cut(s) 38, 547, 621, 770, 1207, 1301
Bst6I CTCTTC 1 cut(s) 53
BstBAI YACGTR 1 cut(s) 20
BstBI TTCGAA 1 cut(s) 1153
BstC8I GCNNGC 1 cut(s) 657
BstDEI CTNAG 2 cut(s) 750, 1170
BstF5I GGATG 1 cut(s) 79
BstMAI GTCTC 2 cut(s) 604, 1059
BstMWI GCNNNNNNNGC 1 cut(s) 728
BstNSI RCATGY 2 cut(s) 425, 930
BstSFI CTRYAG 1 cut(s) 733
BstV1I GCAGC 1 cut(s) 803
BstV2I GAAGAC 1 cut(s) 902
BstX2I RGATCY 2 cut(s) 466, 799
BstYI RGATCY 2 cut(s) 466, 799
Bsu15I ATCGAT 1 cut(s) 848
BsuRI GGCC 3 cut(s) 64, 494, 971
BsuTUI ATCGAT 1 cut(s) 848
BtsCI GGATG 1 cut(s) 79
BtsIMutI CAGTG 2 cut(s) 552, 617
Cac8I GCNNGC 1 cut(s) 657
Cfr13I GGNCC 1 cut(s) 625
ClaI ATCGAT 1 cut(s) 848
Csp6I GTAC 1 cut(s) 17
CspCI CAANNNNNGTGG 6 cut(s) 82, 117, 602, 637, 961, 996
CviAII CATG 2 cut(s) 422, 927
CviQI GTAC 1 cut(s) 17
DdeI CTNAG 2 cut(s) 750, 1170
DraIII CACNNNGTG 1 cut(s) 272
EaeI YGGCCR 2 cut(s) 492, 969
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
EciI GGCGGA 1 cut(s) 320
Ecl136II GAGCTC 1 cut(s) 890
Eco130I CCWWGG 1 cut(s) 334
Eco24I GRGCYC 1 cut(s) 892
Eco47I GGWCC 1 cut(s) 625
Eco53kI GAGCTC 1 cut(s) 890
EcoICRI GAGCTC 1 cut(s) 890
EcoT14I CCWWGG 1 cut(s) 334
EcoT38I GRGCYC 1 cut(s) 892
ErhI CCWWGG 1 cut(s) 334
FaeI CATG 2 cut(s) 425, 930
FaqI GGGAC 2 cut(s) 638, 1290
FatI CATG 2 cut(s) 421, 926
Fnu4HI GCNGC 1 cut(s) 792
FokI GGATG 1 cut(s) 86
FriOI GRGCYC 1 cut(s) 892
Fsp4HI GCNGC 1 cut(s) 792
GluI GCNGC 1 cut(s) 792
GsuI CTGGAG 1 cut(s) 176
HaeIII GGCC 3 cut(s) 64, 494, 971
Hin1II CATG 2 cut(s) 425, 930
HincII GTYRAC 2 cut(s) 826, 1003
HindII GTYRAC 2 cut(s) 826, 1003
HinfI GANTC 1 cut(s) 986
HpaI GTTAAC 2 cut(s) 826, 1003
HphI GGTGA 4 cut(s) 255, 407, 469, 881
Hpy166II GTNNAC 4 cut(s) 666, 826, 1003, 1189
Hpy188I TCNGA 4 cut(s) 312, 364, 757, 1021
Hpy188III TCNNGA 4 cut(s) 10, 164, 470, 1275
Hpy8I GTNNAC 4 cut(s) 666, 826, 1003, 1189
HpyAV CCTTC 4 cut(s) 457, 1124, 1149, 1260
HpyCH4III ACNGT 6 cut(s) 38, 547, 621, 770, 1207, 1301
HpyCH4IV ACGT 1 cut(s) 19
HpyCH4V TGCA 7 cut(s) 124, 427, 854, 1012, 1093, 1109, 1222
HpyF10VI GCNNNNNNNGC 1 cut(s) 728
HpyF3I CTNAG 2 cut(s) 750, 1170
HpySE526I ACGT 1 cut(s) 19
Hsp92II CATG 2 cut(s) 425, 930
KspAI GTTAAC 2 cut(s) 826, 1003
LmnI GCTCC 1 cut(s) 516
LpnPI CCDG 9 cut(s) 206, 390, 431, 644, 656, 840, 975, 1023, 1296
Lsp1109I GCAGC 1 cut(s) 803
MaeII ACGT 1 cut(s) 19
MaeIII GTNAC 5 cut(s) 284, 413, 562, 704, 779
MboII GAAGA 9 cut(s) 70, 152, 449, 472, 494, 514, 902, 1008, 1139
MflI RGATCY 2 cut(s) 466, 799
MhlI GDGCHC 1 cut(s) 892
MlsI TGGCCA 2 cut(s) 494, 971
MluNI TGGCCA 2 cut(s) 494, 971
MnlI CCTC 7 cut(s) 54, 271, 298, 336, 448, 751, 942
Mox20I TGGCCA 2 cut(s) 494, 971
MscI TGGCCA 2 cut(s) 494, 971
MseI TTAA 6 cut(s) 174, 573, 786, 825, 1002, 1112
MslI CAYNNNNRTG 1 cut(s) 420
Msp20I TGGCCA 2 cut(s) 494, 971
MwoI GCNNNNNNNGC 1 cut(s) 728
NlaIII CATG 2 cut(s) 425, 930
NlaIV GGNNCC 2 cut(s) 25, 626
NmuCI GTSAC 1 cut(s) 413
NspI RCATGY 2 cut(s) 425, 930
NspV TTCGAA 1 cut(s) 1153
PciI ACATGT 1 cut(s) 926
PfeI GAWTC 1 cut(s) 986
PflFI GACNNNGTC 1 cut(s) 751
PkrI GCNGC 1 cut(s) 793
Ppu21I YACGTR 1 cut(s) 20
PscI ACATGT 1 cut(s) 926
Psp124BI GAGCTC 1 cut(s) 892
PspN4I GGNNCC 2 cut(s) 25, 626
PspPI GGNCC 1 cut(s) 625
PsuI RGATCY 2 cut(s) 466, 799
PsyI GACNNNGTC 1 cut(s) 751
RsaI GTAC 1 cut(s) 18
RsaNI GTAC 1 cut(s) 17
RseI CAYNNNNRTG 1 cut(s) 420
SacI GAGCTC 1 cut(s) 892
SaqAI TTAA 6 cut(s) 174, 573, 786, 825, 1002, 1112
SatI GCNGC 1 cut(s) 792
Sau96I GGNCC 1 cut(s) 625
SduI GDGCHC 1 cut(s) 892
SfcI CTRYAG 1 cut(s) 733
SfuI TTCGAA 1 cut(s) 1153
SinI GGWCC 1 cut(s) 625
SmiMI CAYNNNNRTG 1 cut(s) 420
SsiI CCGC 1 cut(s) 331
SstI GAGCTC 1 cut(s) 892
StyI CCWWGG 1 cut(s) 334
TaaI ACNGT 6 cut(s) 38, 547, 621, 770, 1207, 1301
TaiI ACGT 1 cut(s) 22
TaqI TCGA 7 cut(s) 56, 480, 500, 848, 880, 916, 1153
TfiI GAWTC 1 cut(s) 986
Tru1I TTAA 6 cut(s) 174, 573, 786, 825, 1002, 1112
Tru9I TTAA 6 cut(s) 174, 573, 786, 825, 1002, 1112
TscAI CASTG 2 cut(s) 552, 624
TseFI GTSAC 1 cut(s) 413
TseI GCWGC 1 cut(s) 791
Tsp45I GTSAC 1 cut(s) 413
TspDTI ATGAA 5 cut(s) 381, 848, 902, 1052, 1281
TspGWI ACGGA 1 cut(s) 972
TspRI CASTG 2 cut(s) 552, 624
Tth111I GACNNNGTC 1 cut(s) 751
VpaK11BI GGWCC 1 cut(s) 625
XapI RAATTY 5 cut(s) 85, 252, 400, 963, 1253
XceI RCATGY 2 cut(s) 425, 930
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.