RchiOBHm_Chr1g0373401

SAD/SRA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002400
Physical Location & Seq
Reverse (-)
61653454 .. 61655749
2296 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59728

Sequence Viewer

Length: 990 bp
ATGGTTACATTGAAAACACCTGAAAAAGAAAATGGGTTTCGCCCCAATTTTAAGAGGCCTAGAGGTTATACAGTTCGAGATTTCCCTGAAGGTTGTGGACGATTTGTGGCTCCAGTGCAGCCAAGTGAATGTGAAGAGGGTGATGAAGATATGAACACATTAGCAAGGAACAATTGCTCCCTGCCTAGTCCTCGAGTTGATCTTGATGTTGTTCGAGATTTTCCTAAAGGTTGTGGGCCGACGGTAGTTTCTTCTTTGAAAGATGCTGAAGAGAAGAGTTTGGTTCCAGACGTTAAAGAATGCGAGCAGCGTGTTGTTGGTCACAAGTTGAGTGTTGCAAGTGTGGTTGATAAAGCTCATAACAAGGTGAAGAAAGCTTTGGCTGCATATCAAGAGACTTTGAGTGAGATGGGTGGAGAATGCGATGCTAATTTCAACAGACTAAAGGGTTGGAAATTGTATGTTGAAGCAGCAATGTATCTTAAGAAGAGACATAAATGGGTTAACAACACAAAGAAACAAACAGGGGACATTCCAGGAGTGAAGGTTGGTGACAAGTTTCGGTATAGACCTGAATTAGCTATTGTTGGTCTTCATAGTCACTTTCAATGCGGTATTGATTATATGACACAGGACGGGGAAATGATTGCCACAAGTATTGTTGAATCTGGCCGCTATGCGAACGAGACAGAATCACCTGATGTCATGATATACACAGGTCAAGGTGGAAATCCAAAGGTTTCAAAAGGGGAACCAATAGATCAAAAGCCCGACCGTGGAAACCGTGCACTGATGAATAGCAAGGCAGCAGGAAATCCTGTGAGGGTAATCCGGAGCTATAAATTTCGGGAGGAATCTGGTTATGTTTATGATGGTCTCTACATTGTTGATGATTTTTGGCGAGAAAGAGGGGTTTATGGTAAATTTGTGTTTAGATTTTCGTTGAGGAGGATTTCGGGTCAACCAAAACTCACAGTTTGCAACAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 ko04211 map00310 map04211
Pfam Domains
Protein Families
Pre-SET SAD_SRA SET

Protein Analysis

329

Amino Acids

36.99

Weight (kDa)

8.94

Isoelectric Point (pI)

32.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAD_SRA PF02182 175 - 321 1.5e-47 SAD/SRA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 831
AciI CCGC 2 cut(s) 612, 673
AcoI YGGCCR 1 cut(s) 670
AcsI RAATTY 2 cut(s) 842, 923
AcuI CTGAAG 2 cut(s) 108, 288
AfiI CCNNNNNNNGG 1 cut(s) 776
AflII CTTAAG 1 cut(s) 482
AgsI TTSAA 7 cut(s) 13, 259, 436, 467, 608, 665, 744
AjnI CCWGG 1 cut(s) 535
AjuI GAANNNNNNNTTGG 2 cut(s) 362, 394
AloI GAACNNNNNNTCC 2 cut(s) 161, 193
AluBI AGCT 4 cut(s) 356, 377, 581, 837
AluI AGCT 4 cut(s) 356, 377, 581, 837
Alw21I GWGCWC 1 cut(s) 790
Alw26I GTCTC 4 cut(s) 389, 484, 680, 881
Alw44I GTGCAC 1 cut(s) 786
Ama87I CYCGRG 1 cut(s) 192
Aor13HI TCCGGA 1 cut(s) 831
AoxI GGCC 3 cut(s) 56, 236, 670
ApaLI GTGCAC 1 cut(s) 786
ApeKI GCWGC 5 cut(s) 118, 307, 383, 470, 806
ApoI RAATTY 2 cut(s) 842, 923
AspS9I GGNCC 1 cut(s) 236
AsuHPI GGTGA 4 cut(s) 152, 379, 563, 687
AvaI CYCGRG 1 cut(s) 192
BaeGI GKGCMC 1 cut(s) 790
BbsI GAAGAC 1 cut(s) 584
Bbv12I GWGCWC 1 cut(s) 790
BbvI GCAGC 5 cut(s) 130, 319, 370, 482, 818
BccI CCATC 2 cut(s) 403, 866
BciT130I CCWGG 1 cut(s) 537
BcoDI GTCTC 4 cut(s) 389, 484, 680, 881
BfaI CTAG 2 cut(s) 60, 186
BfrI CTTAAG 1 cut(s) 482
BisI GCNGC 6 cut(s) 119, 308, 384, 471, 673, 807
BlsI GCNGC 6 cut(s) 120, 309, 385, 472, 674, 808
Bme1390I CCNGG 1 cut(s) 537
BmeT110I CYCGRG 1 cut(s) 192
BmgT120I GGNCC 1 cut(s) 236
BmiI GGNNCC 3 cut(s) 111, 285, 753
BmrFI CCNGG 1 cut(s) 537
BmsI GCATC 2 cut(s) 253, 415
BpiI GAAGAC 1 cut(s) 584
BpmI CTGGAG 1 cut(s) 96
BsaI GGTCTC 1 cut(s) 881
BsaJI CCNNGG 1 cut(s) 775
BsaWI WCCGGW 1 cut(s) 831
BsaXI ACNNNNNCTCC 4 cut(s) 161, 191, 531, 561
Bsc4I CCNNNNNNNGG 1 cut(s) 776
Bse1I ACTGG 1 cut(s) 113
Bse3DI GCAATG 1 cut(s) 480
BseAI TCCGGA 1 cut(s) 831
BseBI CCWGG 1 cut(s) 537
BseDI CCNNGG 1 cut(s) 775
BseLI CCNNNNNNNGG 1 cut(s) 776
BseMI GCAATG 1 cut(s) 480
BseNI ACTGG 1 cut(s) 113
BseRI GAGGAG 1 cut(s) 961
BseSI GKGCMC 1 cut(s) 790
BseXI GCAGC 5 cut(s) 130, 319, 370, 482, 818
BsgI GTGCAG 1 cut(s) 137
Bsh1285I CGRYCG 1 cut(s) 775
BshFI GGCC 3 cut(s) 58, 238, 672
BsiEI CGRYCG 1 cut(s) 775
BsiHKAI GWGCWC 1 cut(s) 790
BsiHKCI CYCGRG 1 cut(s) 192
BsiSI CCGG 1 cut(s) 832
BslFI GGGAC 1 cut(s) 542
BslI CCNNNNNNNGG 1 cut(s) 776
BsmAI GTCTC 4 cut(s) 389, 484, 680, 881
BsmFI GGGAC 1 cut(s) 542
BsmI GAATGC 2 cut(s) 305, 425
BsnI GGCC 3 cut(s) 58, 238, 672
Bso31I GGTCTC 1 cut(s) 881
BsoBI CYCGRG 1 cut(s) 192
Bsp1286I GDGCHC 1 cut(s) 790
Bsp13I TCCGGA 1 cut(s) 831
Bsp143I GATC 2 cut(s) 199, 760
BspACI CCGC 2 cut(s) 612, 673
BspANI GGCC 3 cut(s) 58, 238, 672
BspEI TCCGGA 1 cut(s) 831
BspHI TCATGA 1 cut(s) 705
BspLI GGNNCC 3 cut(s) 111, 285, 753
BspTI CTTAAG 1 cut(s) 482
BspTNI GGTCTC 1 cut(s) 881
BsrDI GCAATG 1 cut(s) 480
BsrI ACTGG 1 cut(s) 113
BssECI CCNNGG 1 cut(s) 775
BssMI GATC 2 cut(s) 199, 760
Bst2UI CCWGG 1 cut(s) 537
Bst4CI ACNGT 6 cut(s) 73, 244, 776, 785, 976, 986
Bst6I CTCTTC 4 cut(s) 129, 264, 269, 482
BstAFI CTTAAG 1 cut(s) 482
BstC8I GCNNGC 1 cut(s) 305
BstDSI CCRYGG 1 cut(s) 775
BstKTI GATC 2 cut(s) 202, 763
BstMAI GTCTC 4 cut(s) 389, 484, 680, 881
BstMBI GATC 2 cut(s) 199, 760
BstMCI CGRYCG 1 cut(s) 775
BstMWI GCNNNNNNNGC 1 cut(s) 383
BstNI CCWGG 1 cut(s) 537
BstSCI CCNGG 1 cut(s) 535
BstSLI GKGCMC 1 cut(s) 790
BstV1I GCAGC 5 cut(s) 130, 319, 370, 482, 818
BstV2I GAAGAC 1 cut(s) 584
BsuRI GGCC 3 cut(s) 58, 238, 672
BtgI CCRYGG 1 cut(s) 775
BtgZI GCGATG 1 cut(s) 438
BtsIMutI CAGTG 2 cut(s) 120, 788
Cac8I GCNNGC 1 cut(s) 305
CciI TCATGA 1 cut(s) 705
Cfr13I GGNCC 1 cut(s) 236
CspCI CAANNNNNGTGG 2 cut(s) 640, 675
CviAII CATG 1 cut(s) 706
DpnI GATC 2 cut(s) 201, 762
DpnII GATC 2 cut(s) 199, 760
EaeI YGGCCR 1 cut(s) 670
Eam1104I CTCTTC 4 cut(s) 129, 264, 269, 482
EarI CTCTTC 4 cut(s) 129, 264, 269, 482
Eco147I AGGCCT 1 cut(s) 58
Eco31I GGTCTC 1 cut(s) 881
Eco57I CTGAAG 2 cut(s) 108, 288
Eco88I CYCGRG 1 cut(s) 192
EcoRII CCWGG 1 cut(s) 535
FaeI CATG 1 cut(s) 709
FaqI GGGAC 1 cut(s) 542
FatI CATG 1 cut(s) 705
Fnu4HI GCNGC 6 cut(s) 119, 308, 384, 471, 673, 807
Fsp4HI GCNGC 6 cut(s) 119, 308, 384, 471, 673, 807
FspBI CTAG 2 cut(s) 60, 186
GluI GCNGC 6 cut(s) 119, 308, 384, 471, 673, 807
GsuI CTGGAG 1 cut(s) 96
HaeIII GGCC 3 cut(s) 58, 238, 672
HapII CCGG 1 cut(s) 832
Hin1II CATG 1 cut(s) 709
HincII GTYRAC 2 cut(s) 505, 962
HindII GTYRAC 2 cut(s) 505, 962
HindIII AAGCTT 1 cut(s) 375
HinfI GANTC 3 cut(s) 665, 692, 854
HpaI GTTAAC 1 cut(s) 505
HpaII CCGG 1 cut(s) 832
HphI GGTGA 4 cut(s) 152, 379, 563, 687
Hpy166II GTNNAC 4 cut(s) 98, 505, 788, 962
Hpy188III TCNNGA 8 cut(s) 77, 203, 215, 287, 392, 706, 832, 848
Hpy8I GTNNAC 4 cut(s) 98, 505, 788, 962
Hpy99I CGWCG 1 cut(s) 244
HpyAV CCTTC 2 cut(s) 83, 538
HpyCH4III ACNGT 6 cut(s) 73, 244, 776, 785, 976, 986
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 5 cut(s) 118, 338, 386, 788, 981
HpyF10VI GCNNNNNNNGC 1 cut(s) 383
HpySE526I ACGT 1 cut(s) 291
Hsp92II CATG 1 cut(s) 709
Kpn2I TCCGGA 1 cut(s) 831
KspAI GTTAAC 1 cut(s) 505
Kzo9I GATC 2 cut(s) 199, 760
LmnI GCTCC 3 cut(s) 115, 182, 834
Lsp1109I GCAGC 5 cut(s) 130, 319, 370, 482, 818
LweI GCATC 2 cut(s) 253, 415
MaeI CTAG 2 cut(s) 60, 186
MaeII ACGT 1 cut(s) 291
MaeIII GTNAC 4 cut(s) 4, 320, 551, 599
MalI GATC 2 cut(s) 201, 762
MboI GATC 2 cut(s) 199, 760
MboII GAAGA 8 cut(s) 146, 158, 243, 281, 286, 382, 499, 584
MfeI CAATTG 1 cut(s) 172
MhlI GDGCHC 1 cut(s) 790
MluCI AATT 7 cut(s) 46, 172, 430, 455, 575, 842, 923
MmeI TCCRAC 1 cut(s) 431
MnlI CCTC 9 cut(s) 48, 56, 130, 201, 816, 844, 902, 939, 942
MroI TCCGGA 1 cut(s) 831
MseI TTAA 5 cut(s) 51, 294, 483, 504, 988
MspCI CTTAAG 1 cut(s) 482
MspI CCGG 1 cut(s) 832
MspR9I CCNGG 1 cut(s) 537
MunI CAATTG 1 cut(s) 172
Mva1269I GAATGC 2 cut(s) 305, 425
MvaI CCWGG 1 cut(s) 537
MwoI GCNNNNNNNGC 1 cut(s) 383
NdeII GATC 2 cut(s) 199, 760
NlaIII CATG 1 cut(s) 709
NlaIV GGNNCC 3 cut(s) 111, 285, 753
NmuCI GTSAC 3 cut(s) 320, 551, 599
PaeR7I CTCGAG 1 cut(s) 192
PagI TCATGA 1 cut(s) 705
PceI AGGCCT 1 cut(s) 58
PctI GAATGC 2 cut(s) 305, 425
PfeI GAWTC 3 cut(s) 665, 692, 854
PfoI TCCNGGA 1 cut(s) 535
PkrI GCNGC 6 cut(s) 120, 309, 385, 472, 674, 808
Psp6I CCWGG 1 cut(s) 535
PspGI CCWGG 1 cut(s) 535
PspN4I GGNNCC 3 cut(s) 111, 285, 753
PspPI GGNCC 1 cut(s) 236
PspXI VCTCGAGB 1 cut(s) 192
SaqAI TTAA 5 cut(s) 51, 294, 483, 504, 988
SatI GCNGC 6 cut(s) 119, 308, 384, 471, 673, 807
Sau3AI GATC 2 cut(s) 199, 760
Sau96I GGNCC 1 cut(s) 236
ScrFI CCNGG 1 cut(s) 537
SduI GDGCHC 1 cut(s) 790
SfaNI GCATC 2 cut(s) 253, 415
Sfr274I CTCGAG 1 cut(s) 192
SlaI CTCGAG 1 cut(s) 192
SmlI CTYRAG 2 cut(s) 192, 482
SmoI CTYRAG 2 cut(s) 192, 482
Sse9I AATT 7 cut(s) 46, 172, 430, 455, 575, 842, 923
SseBI AGGCCT 1 cut(s) 58
SsiI CCGC 2 cut(s) 612, 673
SspMI CTAG 2 cut(s) 60, 186
StuI AGGCCT 1 cut(s) 58
StyD4I CCNGG 1 cut(s) 535
TaaI ACNGT 6 cut(s) 73, 244, 776, 785, 976, 986
TaiI ACGT 1 cut(s) 294
TaqI TCGA 3 cut(s) 76, 193, 214
TasI AATT 7 cut(s) 46, 172, 430, 455, 575, 842, 923
TauI GCSGC 1 cut(s) 675
TfiI GAWTC 3 cut(s) 665, 692, 854
Tru1I TTAA 5 cut(s) 51, 294, 483, 504, 988
Tru9I TTAA 5 cut(s) 51, 294, 483, 504, 988
TscAI CASTG 2 cut(s) 120, 795
TseFI GTSAC 3 cut(s) 320, 551, 599
TseI GCWGC 5 cut(s) 118, 307, 383, 470, 806
Tsp45I GTSAC 3 cut(s) 320, 551, 599
TspDTI ATGAA 4 cut(s) 159, 167, 584, 809
TspRI CASTG 2 cut(s) 120, 795
Vha464I CTTAAG 1 cut(s) 482
VneI GTGCAC 1 cut(s) 786
XapI RAATTY 2 cut(s) 842, 923
XhoI CTCGAG 1 cut(s) 192
XspI CTAG 2 cut(s) 60, 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.