Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002400

Physical Location & Seq

Genomic Coordinates Reverse (-)

13897719 .. 13898096

Gene Structure 378 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG075700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGCTTGGAAGGAGGATCAAAATTTCTGAGTTCATCTCAACTTCATCCTACACTGATCTCTTCACAGGTGTTCTTGAGTCCTCACAAAAACAAAGATCAGAAGCCATTAAGGCCATGGTGAAAGTACATGGAACAATACACCACGGTTGCTTTATTCCCCTGAAGAGGGCAAGAGTTGATGTTATTCGACACCTTCCTAGAGGGCGCGGATCAAATGTTAGGCTGCAAAAGGGTGAATGCGAAGATCTTGATTATATCGTTGAACCTACTAATAACGATGATGAACCTGCTGCGAAGATTGATAAGGTGTGTGCGCCTCGTGAAAGGACTGATAAGGTACCATCGATCTTAATTTTAGTGTATGTAACTATGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

125

Amino Acids

14.17

Weight (kDa)

9.07

Isoelectric Point (pI)

38.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002400)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24480 FvH4_2g24480 FvH4_7g03510 FvH4_7g26750 FvH4_7g26780 FvH4_7g26780 FvH4_7g26780
pyrus_communis	pycom07g04430
rosa_chinensis	RchiOBHm_Chr1g0325811 RchiOBHm_Chr1g0373401 RchiOBHm_Chr6g0292341
rosa_laevigata	RLG00000012041 RLG00000026824 RLG00000030101
rosa_multiflora	Rmu_sc0001354.1_g000005 Rmu_sc0017023.1_g000001 Rmu_sc0019006.1_g000003
rosa_roxburghii	Rroxscaffold_4G00284230 Rroxscaffold_4G00324280
rosa_rugosa	Rorug01G0055100 Rorug01G0055200 Rorug01G0377500 Rorug06G0225500
rosa_samantha	Rh1AG071400 Rh1AG071500 Rh1AG386600 Rh1BG058400 Rh1BG350600 Rh1BG350700 Rh1BG350900 Rh1CG070900 Rh1CG363700 Rh1DG075600 Rh1DG075700 Rh1DG381400 Rh6AG338900 Rh6BG346000 Rh6CG353100 Rh6DG339000
rosa_wichuraiana	Rw1G005820 Rw1G034860 Rw6G029500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	295
Acc65I	GGTACC	1 cut(s)	337
AccB1I	GGYRCC	1 cut(s)	337
AccII	CGCG	1 cut(s)	207
AciI	CCGC	1 cut(s)	207
AclWI	GGATC	2 cut(s)	23, 217
AcsI	RAATTY	1 cut(s)	21
AcuI	CTGAAG	1 cut(s)	182
AfaI	GTAC	2 cut(s)	126, 339
AfiI	CCNNNNNNNGG	2 cut(s)	165, 166
AgsI	TTSAA	1 cut(s)	263
AlwI	GGATC	2 cut(s)	23, 217
AoxI	GGCC	1 cut(s)	111
ApeKI	GCWGC	2 cut(s)	223, 290
ApoI	RAATTY	1 cut(s)	21
Asp718I	GGTACC	1 cut(s)	337
AspLEI	GCGC	2 cut(s)	207, 316
AsuHPI	GGTGA	2 cut(s)	130, 245
BanI	GGYRCC	1 cut(s)	337
BauI	CACGAG	1 cut(s)	318
BbvI	GCAGC	2 cut(s)	210, 277
BccI	CCATC	1 cut(s)	349
BfaI	CTAG	1 cut(s)	198
BfuAI	ACCTGC	1 cut(s)	295
BglI	GCCNNNNNGGC	1 cut(s)	110
BglII	AGATCT	1 cut(s)	244
BisI	GCNGC	2 cut(s)	224, 291
BlsI	GCNGC	2 cut(s)	225, 292
BmiI	GGNNCC	1 cut(s)	339
BplI	GAGNNNNNCTC	2 cut(s)	20, 52
BpuEI	CTTGAG	1 cut(s)	95
Bsa29I	ATCGAT	1 cut(s)	344
BsaJI	CCNNGG	2 cut(s)	114, 142
Bsc4I	CCNNNNNNNGG	2 cut(s)	165, 166
BseCI	ATCGAT	1 cut(s)	344
BseDI	CCNNGG	2 cut(s)	114, 142
BseGI	GGATG	1 cut(s)	44
BseLI	CCNNNNNNNGG	2 cut(s)	165, 166
BseMII	CTCAG	1 cut(s)	18
BseXI	GCAGC	2 cut(s)	210, 277
Bsh1236I	CGCG	1 cut(s)	207
BshFI	GGCC	1 cut(s)	113
BshNI	GGYRCC	1 cut(s)	337
BshVI	ATCGAT	1 cut(s)	344
BslI	CCNNNNNNNGG	2 cut(s)	165, 166
BsmI	GAATGC	1 cut(s)	242
BsnI	GGCC	1 cut(s)	113
Bsp143I	GATC	6 cut(s)	15, 55, 95, 209, 244, 345
Bsp19I	CCATGG	1 cut(s)	114
BspACI	CCGC	1 cut(s)	207
BspANI	GGCC	1 cut(s)	113
BspCNI	CTCAG	1 cut(s)	19
BspDI	ATCGAT	1 cut(s)	344
BspFNI	CGCG	1 cut(s)	207
BspLI	GGNNCC	1 cut(s)	339
BspMI	ACCTGC	1 cut(s)	295
BspPI	GGATC	2 cut(s)	23, 217
BspT107I	GGYRCC	1 cut(s)	337
BssECI	CCNNGG	2 cut(s)	114, 142
BssMI	GATC	6 cut(s)	15, 55, 95, 209, 244, 345
BssSI	CACGAG	1 cut(s)	318
BssT1I	CCWWGG	1 cut(s)	114
Bst2BI	CACGAG	1 cut(s)	318
Bst4CI	ACNGT	1 cut(s)	146
Bst6I	CTCTTC	2 cut(s)	65, 158
BstDEI	CTNAG	1 cut(s)	27
BstDSI	CCRYGG	2 cut(s)	114, 142
BstF5I	GGATG	1 cut(s)	44
BstFNI	CGCG	1 cut(s)	207
BstHHI	GCGC	2 cut(s)	207, 316
BstKTI	GATC	6 cut(s)	18, 58, 98, 212, 247, 348
BstMBI	GATC	6 cut(s)	15, 55, 95, 209, 244, 345
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	2 cut(s)	210, 277
BstX2I	RGATCY	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	244
Bsu15I	ATCGAT	1 cut(s)	344
BsuRI	GGCC	1 cut(s)	113
BsuTUI	ATCGAT	1 cut(s)	344
BtgI	CCRYGG	2 cut(s)	114, 142
BtsCI	GGATG	1 cut(s)	44
BtsIMutI	CAGTG	1 cut(s)	51
BveI	ACCTGC	1 cut(s)	295
CfoI	GCGC	2 cut(s)	207, 316
ClaI	ATCGAT	1 cut(s)	344
Csp6I	GTAC	2 cut(s)	125, 338
CviAII	CATG	2 cut(s)	115, 128
CviJI	RGCY	3 cut(s)	104, 113, 223
CviKI_1	RGCY	3 cut(s)	104, 113, 223
CviQI	GTAC	2 cut(s)	125, 338
DdeI	CTNAG	1 cut(s)	27
DpnI	GATC	6 cut(s)	17, 57, 97, 211, 246, 347
DpnII	GATC	6 cut(s)	15, 55, 95, 209, 244, 345
Eam1104I	CTCTTC	2 cut(s)	65, 158
EarI	CTCTTC	2 cut(s)	65, 158
Eco130I	CCWWGG	1 cut(s)	114
Eco57I	CTGAAG	1 cut(s)	182
EcoT14I	CCWWGG	1 cut(s)	114
ErhI	CCWWGG	1 cut(s)	114
FaeI	CATG	2 cut(s)	118, 131
FaiI	YATR	5 cut(s)	116, 129, 255, 363, 371
FatI	CATG	2 cut(s)	114, 127
Fnu4HI	GCNGC	2 cut(s)	224, 291
FokI	GGATG	1 cut(s)	31
Fsp4HI	GCNGC	2 cut(s)	224, 291
FspBI	CTAG	1 cut(s)	198
GlaI	GCGC	2 cut(s)	206, 315
GluI	GCNGC	2 cut(s)	224, 291
HaeIII	GGCC	1 cut(s)	113
HhaI	GCGC	2 cut(s)	207, 316
Hin1II	CATG	2 cut(s)	118, 131
Hin6I	GCGC	2 cut(s)	205, 314
HinP1I	GCGC	2 cut(s)	205, 314
HinfI	GANTC	1 cut(s)	77
HphI	GGTGA	2 cut(s)	130, 245
Hpy188I	TCNGA	2 cut(s)	28, 100
Hpy188III	TCNNGA	3 cut(s)	74, 248, 320
HpyAV	CCTTC	2 cut(s)	3, 203
HpyCH4III	ACNGT	1 cut(s)	146
HpyCH4V	TGCA	1 cut(s)	226
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
HpyF3I	CTNAG	1 cut(s)	27
Hsp92II	CATG	2 cut(s)	118, 131
HspAI	GCGC	2 cut(s)	205, 314
KpnI	GGTACC	1 cut(s)	341
Kzo9I	GATC	6 cut(s)	15, 55, 95, 209, 244, 345
LpnPI	CCDG	3 cut(s)	51, 173, 300
Lsp1109I	GCAGC	2 cut(s)	210, 277
MaeI	CTAG	1 cut(s)	198
MaeIII	GTNAC	1 cut(s)	364
MalI	GATC	6 cut(s)	17, 57, 97, 211, 246, 347
MboI	GATC	6 cut(s)	15, 55, 95, 209, 244, 345
MboII	GAAGA	4 cut(s)	52, 175, 254, 307
MflI	RGATCY	1 cut(s)	244
MluCI	AATT	2 cut(s)	21, 351
MlyI	GAGTC	1 cut(s)	86
MnlI	CCTC	5 cut(s)	6, 91, 159, 194, 327
MseI	TTAA	3 cut(s)	108, 350, 376
Mva1269I	GAATGC	1 cut(s)	242
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	1 cut(s)	110
NcoI	CCATGG	1 cut(s)	114
NdeII	GATC	6 cut(s)	15, 55, 95, 209, 244, 345
NlaIII	CATG	2 cut(s)	118, 131
NlaIV	GGNNCC	1 cut(s)	339
PctI	GAATGC	1 cut(s)	242
PkrI	GCNGC	2 cut(s)	225, 292
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
PspN4I	GGNNCC	1 cut(s)	339
PsuI	RGATCY	1 cut(s)	244
RsaI	GTAC	2 cut(s)	126, 339
RsaNI	GTAC	2 cut(s)	125, 338
SaqAI	TTAA	3 cut(s)	108, 350, 376
SatI	GCNGC	2 cut(s)	224, 291
Sau3AI	GATC	6 cut(s)	15, 55, 95, 209, 244, 345
SchI	GAGTC	1 cut(s)	86
SetI	ASST	6 cut(s)	70, 195, 268, 289, 309, 339
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
Sse9I	AATT	2 cut(s)	21, 351
SsiI	CCGC	1 cut(s)	207
SspMI	CTAG	1 cut(s)	198
StyI	CCWWGG	1 cut(s)	114
TaaI	ACNGT	1 cut(s)	146
TaqI	TCGA	2 cut(s)	187, 344
TasI	AATT	2 cut(s)	21, 351
TatI	WGTACW	1 cut(s)	124
Tru1I	TTAA	3 cut(s)	108, 350, 376
Tru9I	TTAA	3 cut(s)	108, 350, 376
TscAI	CASTG	1 cut(s)	58
TseI	GCWGC	2 cut(s)	223, 290
TspDTI	ATGAA	3 cut(s)	22, 33, 297
TspRI	CASTG	1 cut(s)	58
XapI	RAATTY	1 cut(s)	21
XcmI	CCANNNNNNNNNTGG	1 cut(s)	112
XspI	CTAG	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.