Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002400

Physical Location & Seq

Genomic Coordinates Forward (+)

55312694 .. 55313312

Gene Structure 619 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030101

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCCATAGTGAAAGTACATGGAACAATACACCATGGTTGCTTTACTCCCCTGAAGAGGGCAAGAGTTGATTTTATTCGACACCTTCCTAGAGGGCGCGGATCAAATGTTAGGCGGCAAAAGGGTGAATGCGAAGATCTTGATTATATCGTTGAACCTACTAATAAAGATAATGAACCTGCTGCGAAAATTGATAAGGTGTGTGCGCCTCGTGAAAGGATTGATAAGGGACTGGAGAGCAAAAGTTTACCACCACCGGATCGCCAATGCCATAATCAGAAGGCTTCTGTTGCTAGTTACCGGTTGACTGATCCTGATGTGGAGTCCAAAGATCGTTGCAAGGTGAAGATGACCCTTAATGCATATAAGGAGATACTGACCAAGTTCAACAAACGAAATTGCTCAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

137

Amino Acids

15.53

Weight (kDa)

9.51

Isoelectric Point (pI)

37.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002400)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24480 FvH4_2g24480 FvH4_7g03510 FvH4_7g26750 FvH4_7g26780 FvH4_7g26780 FvH4_7g26780
pyrus_communis	pycom07g04430
rosa_chinensis	RchiOBHm_Chr1g0325811 RchiOBHm_Chr1g0373401 RchiOBHm_Chr6g0292341
rosa_laevigata	RLG00000012041 RLG00000026824 RLG00000030101
rosa_multiflora	Rmu_sc0001354.1_g000005 Rmu_sc0017023.1_g000001 Rmu_sc0019006.1_g000003
rosa_roxburghii	Rroxscaffold_4G00284230 Rroxscaffold_4G00324280
rosa_rugosa	Rorug01G0055100 Rorug01G0055200 Rorug01G0377500 Rorug06G0225500
rosa_samantha	Rh1AG071400 Rh1AG071500 Rh1AG386600 Rh1BG058400 Rh1BG350600 Rh1BG350700 Rh1BG350900 Rh1CG070900 Rh1CG363700 Rh1DG075600 Rh1DG075700 Rh1DG381400 Rh6AG338900 Rh6BG346000 Rh6CG353100 Rh6DG339000
rosa_wichuraiana	Rw1G005820 Rw1G034860 Rw6G029500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	187
AccII	CGCG	1 cut(s)	99
AciI	CCGC	2 cut(s)	99, 115
AclWI	GGATC	3 cut(s)	109, 267, 305
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	74
AfaI	GTAC	1 cut(s)	18
AfiI	CCNNNNNNNGG	2 cut(s)	57, 58
AgeI	ACCGGT	1 cut(s)	300
AgsI	TTSAA	2 cut(s)	155, 388
AlwI	GGATC	3 cut(s)	109, 267, 305
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	182
AsiGI	ACCGGT	1 cut(s)	300
AspLEI	GCGC	2 cut(s)	99, 208
AsuHPI	GGTGA	2 cut(s)	137, 355
BalI	TGGCCA	1 cut(s)	5
BauI	CACGAG	1 cut(s)	210
BbvI	GCAGC	1 cut(s)	169
BfaI	CTAG	2 cut(s)	90, 294
BfuAI	ACCTGC	1 cut(s)	187
BglII	AGATCT	1 cut(s)	136
BisI	GCNGC	2 cut(s)	116, 183
BlsI	GCNGC	2 cut(s)	117, 184
BpmI	CTGGAG	1 cut(s)	254
BsaJI	CCNNGG	1 cut(s)	34
BsaWI	WCCGGW	2 cut(s)	256, 300
Bsc4I	CCNNNNNNNGG	2 cut(s)	57, 58
Bse118I	RCCGGY	1 cut(s)	300
Bse1I	ACTGG	1 cut(s)	237
BseDI	CCNNGG	1 cut(s)	34
BseLI	CCNNNNNNNGG	2 cut(s)	57, 58
BseNI	ACTGG	1 cut(s)	237
BseXI	GCAGC	1 cut(s)	169
Bsh1236I	CGCG	1 cut(s)	99
BshFI	GGCC	1 cut(s)	5
BshTI	ACCGGT	1 cut(s)	300
BsiSI	CCGG	2 cut(s)	257, 301
BslFI	GGGAC	1 cut(s)	243
BslI	CCNNNNNNNGG	2 cut(s)	57, 58
BsmFI	GGGAC	1 cut(s)	243
BsmI	GAATGC	1 cut(s)	134
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	5 cut(s)	101, 136, 259, 310, 331
Bsp19I	CCATGG	1 cut(s)	34
BspACI	CCGC	2 cut(s)	99, 115
BspANI	GGCC	1 cut(s)	5
BspFNI	CGCG	1 cut(s)	99
BspMI	ACCTGC	1 cut(s)	187
BspPI	GGATC	3 cut(s)	109, 267, 305
BsrFI	RCCGGY	1 cut(s)	300
BsrI	ACTGG	1 cut(s)	237
BssAI	RCCGGY	1 cut(s)	300
BssECI	CCNNGG	1 cut(s)	34
BssMI	GATC	5 cut(s)	101, 136, 259, 310, 331
BssSI	CACGAG	1 cut(s)	210
BssT1I	CCWWGG	1 cut(s)	34
Bst2BI	CACGAG	1 cut(s)	210
Bst6I	CTCTTC	1 cut(s)	50
BstDEI	CTNAG	1 cut(s)	408
BstDSI	CCRYGG	1 cut(s)	34
BstFNI	CGCG	1 cut(s)	99
BstHHI	GCGC	2 cut(s)	99, 208
BstKTI	GATC	5 cut(s)	104, 139, 262, 313, 334
BstMBI	GATC	5 cut(s)	101, 136, 259, 310, 331
BstMWI	GCNNNNNNNGC	1 cut(s)	290
BstUI	CGCG	1 cut(s)	99
BstV1I	GCAGC	1 cut(s)	169
BstX2I	RGATCY	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	136
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	34
BveI	ACCTGC	1 cut(s)	187
CfoI	GCGC	2 cut(s)	99, 208
Cfr10I	RCCGGY	1 cut(s)	300
Csp6I	GTAC	1 cut(s)	17
CspAI	ACCGGT	1 cut(s)	300
CviAII	CATG	2 cut(s)	20, 35
CviJI	RGCY	2 cut(s)	5, 284
CviKI_1	RGCY	2 cut(s)	5, 284
CviQI	GTAC	1 cut(s)	17
DdeI	CTNAG	1 cut(s)	408
DpnI	GATC	5 cut(s)	103, 138, 261, 312, 333
DpnII	GATC	5 cut(s)	101, 136, 259, 310, 331
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
Eco130I	CCWWGG	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	74
EcoT14I	CCWWGG	1 cut(s)	34
EcoT22I	ATGCAT	1 cut(s)	364
ErhI	CCWWGG	1 cut(s)	34
FaeI	CATG	2 cut(s)	23, 38
FaiI	YATR	7 cut(s)	8, 21, 36, 147, 273, 364, 366
FaqI	GGGAC	1 cut(s)	243
FatI	CATG	2 cut(s)	19, 34
Fnu4HI	GCNGC	2 cut(s)	116, 183
Fsp4HI	GCNGC	2 cut(s)	116, 183
FspBI	CTAG	2 cut(s)	90, 294
GlaI	GCGC	2 cut(s)	98, 207
GluI	GCNGC	2 cut(s)	116, 183
GsuI	CTGGAG	1 cut(s)	254
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	257, 301
HhaI	GCGC	2 cut(s)	99, 208
Hin1II	CATG	2 cut(s)	23, 38
Hin6I	GCGC	2 cut(s)	97, 206
HinP1I	GCGC	2 cut(s)	97, 206
HincII	GTYRAC	1 cut(s)	306
HindII	GTYRAC	1 cut(s)	306
HinfI	GANTC	1 cut(s)	323
HpaII	CCGG	2 cut(s)	257, 301
HphI	GGTGA	2 cut(s)	137, 355
Hpy166II	GTNNAC	2 cut(s)	248, 306
Hpy188I	TCNGA	1 cut(s)	279
Hpy188III	TCNNGA	3 cut(s)	140, 212, 314
Hpy8I	GTNNAC	2 cut(s)	248, 306
HpyAV	CCTTC	2 cut(s)	95, 274
HpyCH4V	TGCA	2 cut(s)	339, 362
HpyF10VI	GCNNNNNNNGC	1 cut(s)	290
HpyF3I	CTNAG	1 cut(s)	408
Hsp92II	CATG	2 cut(s)	23, 38
HspAI	GCGC	2 cut(s)	97, 206
Kzo9I	GATC	5 cut(s)	101, 136, 259, 310, 331
LpnPI	CCDG	6 cut(s)	65, 192, 218, 270, 314, 327
Lsp1109I	GCAGC	1 cut(s)	169
MaeI	CTAG	2 cut(s)	90, 294
MaeIII	GTNAC	1 cut(s)	296
MalI	GATC	5 cut(s)	103, 138, 261, 312, 333
MboI	GATC	5 cut(s)	101, 136, 259, 310, 331
MboII	GAAGA	3 cut(s)	67, 146, 358
MflI	RGATCY	1 cut(s)	136
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	189, 397
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	332
MnlI	CCTC	3 cut(s)	51, 86, 219
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	364
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	357
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	257, 301
Mva1269I	GAATGC	1 cut(s)	134
MvnI	CGCG	1 cut(s)	99
MwoI	GCNNNNNNNGC	1 cut(s)	290
NcoI	CCATGG	1 cut(s)	34
NdeII	GATC	5 cut(s)	101, 136, 259, 310, 331
NlaIII	CATG	2 cut(s)	23, 38
NsiI	ATGCAT	1 cut(s)	364
PctI	GAATGC	1 cut(s)	134
PinAI	ACCGGT	1 cut(s)	300
PkrI	GCNGC	2 cut(s)	117, 184
PleI	GAGTC	1 cut(s)	331
PpsI	GAGTC	1 cut(s)	331
PsuI	RGATCY	1 cut(s)	136
RsaI	GTAC	1 cut(s)	18
RsaNI	GTAC	1 cut(s)	17
SaqAI	TTAA	1 cut(s)	357
SatI	GCNGC	2 cut(s)	116, 183
Sau3AI	GATC	5 cut(s)	101, 136, 259, 310, 331
SchI	GAGTC	1 cut(s)	332
SetI	ASST	5 cut(s)	87, 160, 181, 201, 345
Sse9I	AATT	2 cut(s)	189, 397
SsiI	CCGC	2 cut(s)	99, 115
SspMI	CTAG	2 cut(s)	90, 294
StyI	CCWWGG	1 cut(s)	34
TaqI	TCGA	1 cut(s)	79
TasI	AATT	2 cut(s)	189, 397
TatI	WGTACW	1 cut(s)	16
TauI	GCSGC	1 cut(s)	118
Tru1I	TTAA	1 cut(s)	357
Tru9I	TTAA	1 cut(s)	357
TseI	GCWGC	1 cut(s)	182
TspDTI	ATGAA	1 cut(s)	189
XspI	CTAG	2 cut(s)	90, 294
Zsp2I	ATGCAT	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.