Rorug06G0225500

histone-lysine N-methyltransferase, H3 lysine-9 specific

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0002400
Physical Location & Seq
Reverse (-)
36201029 .. 36201448
420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0225500.1

Sequence Viewer

Length: 420 bp
ATGCTGTTGGCCAAGCTTTGCTCTCTAAGCGGTTGGGCAAGAAACACATTATTGCTGAAACTGGGGCAGGTCAACGGAGTTGCCACTGCAACTGTTTGTGCTCGATTTGGGTTGCAGTGCATCATTTACATGGGTGCCCAAGATATGGAAAGGCAAGCCCTCAACGTTTTCCGAATGCGGCTTCTTGGCGCTGAAGTTAAGGCTGTTCATTCTGGAATAGCAACACTAAAGGATACTACTTCAGAAGCTATAAGGGACTGGGTGACTAATGTCAAGAAAACTCATTATATTTTGAGCTCTGTTGCTGGCCCTCATCCATACCCTATGATGGTTCGCGATTTCCACAAGGTGATAGGCAAAGAAACAATAAAACAGGCACTCGAAAAATCGAGTGGAAAGGCAGATGTGCTAGTTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 ko04211 map00310 map04211
Pfam Domains
Protein Families
Pre-SET SAD_SRA SET

Protein Analysis

139

Amino Acids

15.24

Weight (kDa)

9.67

Isoelectric Point (pI)

15.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 26 - 138 6e-09 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 58
AccB1I GGYRCC 1 cut(s) 134
AccB7I CCANNNNNTGG 1 cut(s) 145
AccII CGCG 1 cut(s) 336
AciI CCGC 2 cut(s) 30, 178
AclI AACGTT 1 cut(s) 165
AcoI YGGCCR 1 cut(s) 9
AcuI CTGAAG 2 cut(s) 213, 225
AdeI CACNNNGTG 1 cut(s) 349
AfiI CCNNNNNNNGG 2 cut(s) 145, 328
AluBI AGCT 3 cut(s) 16, 248, 297
AluI AGCT 3 cut(s) 16, 248, 297
Alw21I GWGCWC 2 cut(s) 103, 299
AoxI GGCC 2 cut(s) 9, 307
AspLEI GCGC 1 cut(s) 191
AspS9I GGNCC 1 cut(s) 308
AsuHPI GGTGA 2 cut(s) 274, 361
BaeGI GKGCMC 1 cut(s) 139
BalI TGGCCA 1 cut(s) 11
BanI GGYRCC 1 cut(s) 134
BanII GRGCYC 1 cut(s) 299
Bbv12I GWGCWC 2 cut(s) 103, 299
BccI CCATC 1 cut(s) 322
BciVI GTATCC 1 cut(s) 226
BfaI CTAG 1 cut(s) 410
BfoI RGCGCY 1 cut(s) 192
BfuAI ACCTGC 1 cut(s) 58
BfuI GTATCC 1 cut(s) 226
BisI GCNGC 1 cut(s) 179
BlsI GCNGC 1 cut(s) 180
BmgT120I GGNCC 1 cut(s) 308
BmiI GGNNCC 1 cut(s) 136
BmrI ACTGGG 2 cut(s) 71, 268
BmsI GCATC 1 cut(s) 129
BmuI ACTGGG 2 cut(s) 71, 268
BoxI GACNNNNGTC 1 cut(s) 269
Bsc4I CCNNNNNNNGG 2 cut(s) 145, 328
Bse1I ACTGG 2 cut(s) 66, 263
BseGI GGATG 1 cut(s) 313
BseLI CCNNNNNNNGG 2 cut(s) 145, 328
BseNI ACTGG 2 cut(s) 66, 263
BseSI GKGCMC 1 cut(s) 139
Bsh1236I CGCG 1 cut(s) 336
BshFI GGCC 2 cut(s) 11, 309
BshNI GGYRCC 1 cut(s) 134
BsiHKAI GWGCWC 2 cut(s) 103, 299
BslFI GGGAC 1 cut(s) 269
BslI CCNNNNNNNGG 2 cut(s) 145, 328
BsmFI GGGAC 1 cut(s) 269
BsmI GAATGC 1 cut(s) 180
BsnI GGCC 2 cut(s) 11, 309
Bsp1286I GDGCHC 3 cut(s) 103, 139, 299
Bsp68I TCGCGA 1 cut(s) 336
BspACI CCGC 2 cut(s) 30, 178
BspANI GGCC 2 cut(s) 11, 309
BspFNI CGCG 1 cut(s) 336
BspLI GGNNCC 1 cut(s) 136
BspMI ACCTGC 1 cut(s) 58
BspT107I GGYRCC 1 cut(s) 134
BsrI ACTGG 2 cut(s) 66, 263
Bst4CI ACNGT 1 cut(s) 94
BstC8I GCNNGC 2 cut(s) 156, 307
BstDEI CTNAG 1 cut(s) 26
BstF5I GGATG 1 cut(s) 313
BstFNI CGCG 1 cut(s) 336
BstH2I RGCGCY 1 cut(s) 192
BstHHI GCGC 1 cut(s) 191
BstMWI GCNNNNNNNGC 1 cut(s) 27
BstPAI GACNNNNGTC 1 cut(s) 269
BstSLI GKGCMC 1 cut(s) 139
BstUI CGCG 1 cut(s) 336
BsuI GTATCC 1 cut(s) 226
BsuRI GGCC 2 cut(s) 11, 309
BtsCI GGATG 1 cut(s) 313
BtsI GCAGTG 2 cut(s) 84, 122
BtsIMutI CAGTG 2 cut(s) 84, 122
BtuMI TCGCGA 1 cut(s) 336
BveI ACCTGC 1 cut(s) 58
Cac8I GCNNGC 2 cut(s) 156, 307
CfoI GCGC 1 cut(s) 191
Cfr13I GGNCC 1 cut(s) 308
CviAII CATG 1 cut(s) 130
CviJI RGCY 8 cut(s) 11, 16, 158, 181, 203, 248, 297, 309
CviKI_1 RGCY 8 cut(s) 11, 16, 158, 181, 203, 248, 297, 309
DdeI CTNAG 1 cut(s) 26
DraIII CACNNNGTG 1 cut(s) 349
EaeI YGGCCR 1 cut(s) 9
Ecl136II GAGCTC 1 cut(s) 297
Eco24I GRGCYC 1 cut(s) 299
Eco53kI GAGCTC 1 cut(s) 297
Eco57I CTGAAG 2 cut(s) 213, 225
EcoICRI GAGCTC 1 cut(s) 297
EcoT38I GRGCYC 1 cut(s) 299
FaeI CATG 1 cut(s) 133
FaiI YATR 6 cut(s) 131, 146, 251, 288, 319, 326
FaqI GGGAC 1 cut(s) 269
FatI CATG 1 cut(s) 129
Fnu4HI GCNGC 1 cut(s) 179
FokI GGATG 1 cut(s) 300
FriOI GRGCYC 1 cut(s) 299
Fsp4HI GCNGC 1 cut(s) 179
FspBI CTAG 1 cut(s) 410
GlaI GCGC 1 cut(s) 190
GluI GCNGC 1 cut(s) 179
HaeII RGCGCY 1 cut(s) 192
HaeIII GGCC 2 cut(s) 11, 309
HhaI GCGC 1 cut(s) 191
Hin1II CATG 1 cut(s) 133
Hin6I GCGC 1 cut(s) 189
HinP1I GCGC 1 cut(s) 189
HincII GTYRAC 1 cut(s) 73
HindII GTYRAC 1 cut(s) 73
HindIII AAGCTT 1 cut(s) 14
HphI GGTGA 2 cut(s) 274, 361
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 2 cut(s) 173, 244
Hpy188III TCNNGA 3 cut(s) 213, 274, 335
Hpy8I GTNNAC 1 cut(s) 73
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 3 cut(s) 89, 115, 120
HpyF10VI GCNNNNNNNGC 1 cut(s) 27
HpyF3I CTNAG 1 cut(s) 26
HpySE526I ACGT 1 cut(s) 165
Hsp92II CATG 1 cut(s) 133
HspAI GCGC 1 cut(s) 189
LpnPI CCDG 6 cut(s) 47, 53, 198, 244, 291, 359
LweI GCATC 1 cut(s) 129
MaeI CTAG 1 cut(s) 410
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 1 cut(s) 262
MhlI GDGCHC 3 cut(s) 103, 139, 299
MlsI TGGCCA 1 cut(s) 11
MluNI TGGCCA 1 cut(s) 11
MnlI CCTC 2 cut(s) 170, 321
Mox20I TGGCCA 1 cut(s) 11
MscI TGGCCA 1 cut(s) 11
MseI TTAA 1 cut(s) 198
MslI CAYNNNNRTG 1 cut(s) 128
Msp20I TGGCCA 1 cut(s) 11
Mva1269I GAATGC 1 cut(s) 180
MvnI CGCG 1 cut(s) 336
MwoI GCNNNNNNNGC 1 cut(s) 27
NlaIII CATG 1 cut(s) 133
NlaIV GGNNCC 1 cut(s) 136
NmuCI GTSAC 1 cut(s) 262
NruI TCGCGA 1 cut(s) 336
PctI GAATGC 1 cut(s) 180
PflMI CCANNNNNTGG 1 cut(s) 145
PkrI GCNGC 1 cut(s) 180
PshAI GACNNNNGTC 1 cut(s) 269
Psp124BI GAGCTC 1 cut(s) 299
Psp1406I AACGTT 1 cut(s) 165
PspN4I GGNNCC 1 cut(s) 136
PspPI GGNCC 1 cut(s) 308
RruI TCGCGA 1 cut(s) 336
RseI CAYNNNNRTG 1 cut(s) 128
SacI GAGCTC 1 cut(s) 299
SaqAI TTAA 1 cut(s) 198
SatI GCNGC 1 cut(s) 179
Sau96I GGNCC 1 cut(s) 308
SduI GDGCHC 3 cut(s) 103, 139, 299
SetI ASST 6 cut(s) 18, 72, 168, 250, 299, 351
SfaNI GCATC 1 cut(s) 129
SmiMI CAYNNNNRTG 1 cut(s) 128
SsiI CCGC 2 cut(s) 30, 178
SspMI CTAG 1 cut(s) 410
SstI GAGCTC 1 cut(s) 299
TaaI ACNGT 1 cut(s) 94
TaiI ACGT 1 cut(s) 168
TaqI TCGA 3 cut(s) 103, 381, 389
TauI GCSGC 1 cut(s) 181
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TscAI CASTG 2 cut(s) 91, 122
TseFI GTSAC 1 cut(s) 262
Tsp45I GTSAC 1 cut(s) 262
TspDTI ATGAA 1 cut(s) 197
TspGWI ACGGA 1 cut(s) 90
TspRI CASTG 2 cut(s) 91, 122
Van91I CCANNNNNTGG 1 cut(s) 145
XspI CTAG 1 cut(s) 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.