RLG00000012041

histone-lysine N-methyltransferase, H3 lysine-9 specific

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0002400
Physical Location & Seq
Forward (+)
14721125 .. 14722432
1308 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012041

Sequence Viewer

Length: 1308 bp
ATGGCTATCGTGAAAGTACGTGGAACCCTAAAAGACGGTTTATTTATTCCAAAATCGAAGAGGCCAAGAGTGGATGATTTTGGAAATTTTCCCAATGGGCGTGGATCATATAGAGTTATGGTGCAAAGTAGTGAAAGTGAAGATCACAATTCTCTACTTGATTGTGATTTGGTTAAATCATCAAAAAATCTCCAGCAAGGTAAGAGAAATGATGGGATTTCGTATTTTTCTATTACGGCTACACCACGAGAAATTTTGCCCTCACCACAGAGTGTATTGAAAAGTAACTTTGTAAAGAGCAAGGAGGATCGGAACACTAACCTATCATTCCGCCAAGGACTGAGGAAGCAACAGCCTTTGTCTGATGAATACAGACCTGAAAGGACGGCTGTATGTGGAAATTTTGATTTTAGTCACCAGCACGTGCATAATTTGGAAGATAAAGATAATACCGAGGTGAAGAAGGATCTTAATGTGATCAAAGATACTTTGGCCAAATCCAAGAAACAAAATTGGAGCAACAAATATCAGTACAAAACCAACACAATGTCCAGAAATGTTGTTACAACTTTTAATTCAAAAAATAGTCATTTCGTCTTGGGGAGAAAGAGACAACTACTGTGGGACCACCAGCAACCTTACCAGACGAGTATGCATGCGGAGTTTACAAGTCAAAAGTCGGTGGAAGTGGAACATAAAGATCGTAACAAGGTCAAGGGGGTTTTGGAAGCCTATAGAGAGATATTGACCAAGTCCGAGGCACAAAACTGTAATTGGAGTTACATTAAAGCAGCAATGGATCTCAAAAAACAAGGAAAATGGGTTAACAAGATGAAGCAAGTAGGATCGATTGCAGGAGTAAAAGTTGGTGATAGGTTTCGACATAGAGTTCAACTAACTATTGTTGGTCTTCATCGACAATTTACATGTGGTATTGATTATATGTGGAGGAATGACGGAAAAATTTTGGCCACAAGTATTGTTGATTCTGGTCGCTATGTTAACAATTTGCAATCTTCTGATATACTGATCTACTCTGGTCAAGGTGGAAAGTCTCTGTTTCATAAAACTAAACCGACAGATCAAATAATGCAACGTGGAAACCTTGCATTGAGGAATAGCAAAGAAGAAGGAACTCCTATAAGGGTAATTCGGAGGTTGAAACATTCTAAGGGTTCGTGTTATGTTTACTATGGATTATACACCGTAGAAAGAGTTCTGCAAGAAAGACAACTTGGTATGATGATTTATAAATTTATGTTGAGAAGGAAGTCGGGACAACCAGAGCTTTCATTTGACAGTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 ko04211 map00310 map04211
Pfam Domains
Protein Families
Pre-SET SAD_SRA SET

Protein Analysis

436

Amino Acids

50.16

Weight (kDa)

9.91

Isoelectric Point (pI)

40.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAD_SRA PF02182 281 - 427 4.9e-41 SAD/SRA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1251
AciI CCGC 2 cut(s) 331, 659
AclWI GGATC 5 cut(s) 112, 315, 474, 807, 853
AcoI YGGCCR 2 cut(s) 492, 969
AcsI RAATTY 5 cut(s) 85, 252, 400, 963, 1253
AcvI CACGTG 1 cut(s) 424
AdeI CACNNNGTG 1 cut(s) 272
AfaI GTAC 2 cut(s) 18, 533
AflIII ACRYGT 1 cut(s) 926
AgsI TTSAA 4 cut(s) 280, 579, 893, 1162
AjuI GAANNNNNNNTTGG 2 cut(s) 1218, 1250
AluBI AGCT 1 cut(s) 1288
AluI AGCT 1 cut(s) 1288
Alw26I GTCTC 2 cut(s) 604, 1059
AlwI GGATC 5 cut(s) 112, 315, 474, 807, 853
AoxI GGCC 3 cut(s) 62, 492, 969
ApeKI GCWGC 1 cut(s) 791
ApoI RAATTY 5 cut(s) 85, 252, 400, 963, 1253
Asp700I GAANNNNTTC 1 cut(s) 1215
AspS9I GGNCC 1 cut(s) 625
AsuHPI GGTGA 4 cut(s) 255, 407, 469, 881
AvaII GGWCC 1 cut(s) 625
BalI TGGCCA 2 cut(s) 494, 971
BauI CACGAG 1 cut(s) 246
BbrPI CACGTG 1 cut(s) 424
BbsI GAAGAC 1 cut(s) 902
BbvI GCAGC 1 cut(s) 803
BccI CCATC 1 cut(s) 206
BceAI ACGGC 2 cut(s) 252, 402
BclI TGATCA 1 cut(s) 477
BcoDI GTCTC 2 cut(s) 604, 1059
BfmI CTRYAG 1 cut(s) 733
BisI GCNGC 1 cut(s) 792
BlsI GCNGC 1 cut(s) 793
Bme18I GGWCC 1 cut(s) 625
BmgT120I GGNCC 1 cut(s) 625
BmiI GGNNCC 2 cut(s) 25, 626
BpiI GAAGAC 1 cut(s) 902
BpmI CTGGAG 1 cut(s) 176
Bsa29I ATCGAT 1 cut(s) 848
BsaAI YACGTR 2 cut(s) 20, 424
BsaJI CCNNGG 3 cut(s) 334, 453, 756
BsaXI ACNNNNNCTCC 2 cut(s) 849, 879
Bse3DI GCAATG 1 cut(s) 801
BseCI ATCGAT 1 cut(s) 848
BseDI CCNNGG 3 cut(s) 334, 453, 756
BseGI GGATG 1 cut(s) 79
BseMI GCAATG 1 cut(s) 801
BseMII CTCAG 1 cut(s) 332
BseXI GCAGC 1 cut(s) 803
BshFI GGCC 3 cut(s) 64, 494, 971
BshVI ATCGAT 1 cut(s) 848
BslFI GGGAC 2 cut(s) 638, 1290
BsmAI GTCTC 2 cut(s) 604, 1059
BsmFI GGGAC 2 cut(s) 638, 1290
BsnI GGCC 3 cut(s) 64, 494, 971
BspACI CCGC 2 cut(s) 331, 659
BspANI GGCC 3 cut(s) 64, 494, 971
BspCNI CTCAG 1 cut(s) 333
BspDI ATCGAT 1 cut(s) 848
BspLI GGNNCC 2 cut(s) 25, 626
BspPI GGATC 5 cut(s) 112, 315, 474, 807, 853
BsrDI GCAATG 1 cut(s) 801
BssECI CCNNGG 3 cut(s) 334, 453, 756
BssSI CACGAG 1 cut(s) 246
BssT1I CCWWGG 1 cut(s) 334
Bst2BI CACGAG 1 cut(s) 246
Bst4CI ACNGT 5 cut(s) 38, 621, 770, 1207, 1301
Bst6I CTCTTC 1 cut(s) 53
BstBAI YACGTR 2 cut(s) 20, 424
BstC8I GCNNGC 1 cut(s) 657
BstDEI CTNAG 2 cut(s) 341, 1170
BstF5I GGATG 1 cut(s) 79
BstMAI GTCTC 2 cut(s) 604, 1059
BstNSI RCATGY 2 cut(s) 659, 930
BstSFI CTRYAG 1 cut(s) 733
BstV1I GCAGC 1 cut(s) 803
BstV2I GAAGAC 1 cut(s) 902
BstX2I RGATCY 2 cut(s) 466, 799
BstYI RGATCY 2 cut(s) 466, 799
Bsu15I ATCGAT 1 cut(s) 848
BsuRI GGCC 3 cut(s) 64, 494, 971
BsuTUI ATCGAT 1 cut(s) 848
BtsCI GGATG 1 cut(s) 79
Cac8I GCNNGC 1 cut(s) 657
Cfr13I GGNCC 1 cut(s) 625
ClaI ATCGAT 1 cut(s) 848
Csp6I GTAC 2 cut(s) 17, 532
CspCI CAANNNNNGTGG 6 cut(s) 82, 117, 602, 637, 961, 996
CviAII CATG 2 cut(s) 656, 927
CviJI RGCY 9 cut(s) 5, 64, 239, 355, 389, 494, 731, 971, 1288
CviKI_1 RGCY 9 cut(s) 5, 64, 239, 355, 389, 494, 731, 971, 1288
CviQI GTAC 2 cut(s) 17, 532
DdeI CTNAG 2 cut(s) 341, 1170
DraIII CACNNNGTG 1 cut(s) 272
EaeI YGGCCR 2 cut(s) 492, 969
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
EciI GGCGGA 1 cut(s) 320
Eco130I CCWWGG 1 cut(s) 334
Eco47I GGWCC 1 cut(s) 625
Eco72I CACGTG 1 cut(s) 424
EcoT14I CCWWGG 1 cut(s) 334
EcoT22I ATGCAT 1 cut(s) 657
ErhI CCWWGG 1 cut(s) 334
FaeI CATG 2 cut(s) 659, 930
FaqI GGGAC 2 cut(s) 638, 1290
FatI CATG 2 cut(s) 655, 926
FbaI TGATCA 1 cut(s) 477
Fnu4HI GCNGC 1 cut(s) 792
FokI GGATG 1 cut(s) 86
Fsp4HI GCNGC 1 cut(s) 792
GluI GCNGC 1 cut(s) 792
GsuI CTGGAG 1 cut(s) 176
HaeIII GGCC 3 cut(s) 64, 494, 971
Hin1II CATG 2 cut(s) 659, 930
HincII GTYRAC 2 cut(s) 826, 1003
HindII GTYRAC 2 cut(s) 826, 1003
HinfI GANTC 1 cut(s) 986
HpaI GTTAAC 2 cut(s) 826, 1003
HphI GGTGA 4 cut(s) 255, 407, 469, 881
Hpy166II GTNNAC 4 cut(s) 666, 826, 1003, 1189
Hpy188I TCNGA 5 cut(s) 312, 364, 757, 1021, 1155
Hpy188III TCNNGA 3 cut(s) 10, 552, 1275
Hpy8I GTNNAC 4 cut(s) 666, 826, 1003, 1189
HpyAV CCTTC 3 cut(s) 457, 1124, 1260
HpyCH4III ACNGT 5 cut(s) 38, 621, 770, 1207, 1301
HpyCH4IV ACGT 3 cut(s) 19, 423, 1096
HpyCH4V TGCA 8 cut(s) 124, 427, 655, 854, 1012, 1093, 1109, 1222
HpyF3I CTNAG 2 cut(s) 341, 1170
HpySE526I ACGT 3 cut(s) 19, 423, 1096
Hsp92II CATG 2 cut(s) 659, 930
Ksp22I TGATCA 1 cut(s) 477
KspAI GTTAAC 2 cut(s) 826, 1003
LmnI GCTCC 1 cut(s) 516
Lsp1109I GCAGC 1 cut(s) 803
MaeII ACGT 3 cut(s) 19, 423, 1096
MaeIII GTNAC 5 cut(s) 284, 413, 562, 704, 779
MboII GAAGA 7 cut(s) 70, 152, 449, 472, 902, 1008, 1139
MflI RGATCY 2 cut(s) 466, 799
MlsI TGGCCA 2 cut(s) 494, 971
MluNI TGGCCA 2 cut(s) 494, 971
MnlI CCTC 9 cut(s) 54, 271, 298, 336, 448, 751, 942, 1107, 1149
Mox20I TGGCCA 2 cut(s) 494, 971
Mph1103I ATGCAT 1 cut(s) 657
MroXI GAANNNNTTC 1 cut(s) 1215
MscI TGGCCA 2 cut(s) 494, 971
MseI TTAA 6 cut(s) 174, 471, 573, 786, 825, 1002
Msp20I TGGCCA 2 cut(s) 494, 971
NlaIII CATG 2 cut(s) 659, 930
NlaIV GGNNCC 2 cut(s) 25, 626
NmuCI GTSAC 1 cut(s) 413
NsiI ATGCAT 1 cut(s) 657
NspI RCATGY 2 cut(s) 659, 930
PaeI GCATGC 1 cut(s) 659
PciI ACATGT 1 cut(s) 926
PdmI GAANNNNTTC 1 cut(s) 1215
PfeI GAWTC 1 cut(s) 986
PflFI GACNNNGTC 1 cut(s) 751
PkrI GCNGC 1 cut(s) 793
PmaCI CACGTG 1 cut(s) 424
PmlI CACGTG 1 cut(s) 424
Ppu21I YACGTR 2 cut(s) 20, 424
PscI ACATGT 1 cut(s) 926
PsiI TTATAA 1 cut(s) 1251
PspCI CACGTG 1 cut(s) 424
PspN4I GGNNCC 2 cut(s) 25, 626
PspPI GGNCC 1 cut(s) 625
PsrI GAACNNNNNNTAC 2 cut(s) 1200, 1232
PsuI RGATCY 2 cut(s) 466, 799
PsyI GACNNNGTC 1 cut(s) 751
RsaI GTAC 2 cut(s) 18, 533
RsaNI GTAC 2 cut(s) 17, 532
SaqAI TTAA 6 cut(s) 174, 471, 573, 786, 825, 1002
SatI GCNGC 1 cut(s) 792
Sau96I GGNCC 1 cut(s) 625
SfcI CTRYAG 1 cut(s) 733
SinI GGWCC 1 cut(s) 625
SphI GCATGC 1 cut(s) 659
SsiI CCGC 2 cut(s) 331, 659
StyI CCWWGG 1 cut(s) 334
TaaI ACNGT 5 cut(s) 38, 621, 770, 1207, 1301
TaiI ACGT 3 cut(s) 22, 426, 1099
TaqI TCGA 4 cut(s) 56, 848, 880, 916
TatI WGTACW 1 cut(s) 531
TfiI GAWTC 1 cut(s) 986
Tru1I TTAA 6 cut(s) 174, 471, 573, 786, 825, 1002
Tru9I TTAA 6 cut(s) 174, 471, 573, 786, 825, 1002
TseFI GTSAC 1 cut(s) 413
TseI GCWGC 1 cut(s) 791
Tsp45I GTSAC 1 cut(s) 413
TspDTI ATGAA 5 cut(s) 381, 848, 902, 1052, 1281
TspGWI ACGGA 1 cut(s) 972
Tth111I GACNNNGTC 1 cut(s) 751
VpaK11BI GGWCC 1 cut(s) 625
XapI RAATTY 5 cut(s) 85, 252, 400, 963, 1253
XceI RCATGY 2 cut(s) 659, 930
XmnI GAANNNNTTC 1 cut(s) 1215
Zsp2I ATGCAT 1 cut(s) 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.