Rh1CG070900

histone-lysine N-methyltransferase, H3 lysine-9 specific

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0002400
Physical Location & Seq
Reverse (-)
14667256 .. 14669309
2054 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG070900.1

Sequence Viewer

Length: 1197 bp
ATGATAAGTGGAGGGTCGAACACACAAGAACAAGCCGCTCCCAACTCACACGAAGCAGCCAAACTTGTTATTTGTGACTGTTTGGATGAGATTAAAACCGCTCACGACCCTTCGAGTTCTACCGCTCACGAGTCACGTCCCTTCGAGTTCTTGCCTGGTGTTCTTGAGTCCTCACAAAAACAAAGATCAGAAGCCATTAAGGCCATGGTGAAAGTACATGGAACAATACACCACGGTTGCTTTATTCCCCTGAAGAGGGCAAGAGTTGATGTTATTCGACACCTTCCTAGAGGGCGCGGATCAAATGTTAGGCTGCAAAAGGGTGAATGCGAAGATCTTGATTATATCGTTGAACCTACTAATAACGATGATGAACCTGCTGCGAAGATTGATAAGGTGTGTGCGCCTCGTGAAAGGACTGATAAGTATACAAGGCACACAATATTTAGCAAGGTTGCACCAAGTTCTATTACCTCAAATAATTGTCAGAGACTGGAGAGCAAAAGTTTACCACCACCGGATCGCCAATGCCATAATGAGAAGGTTTCTGTTGCTAGTTACCAGTTGACTGATCCTGATGTGGAGTCCAAAGATCGTTGCAAGGTGAAGAAGACCCTTGATGCATATAAGGAGATACTGACCAAGTTCAACAAACGAAATTGCTCAACTTACATTTTAGCAGCAATTCGTTTAAGGAATGAAGGAAAATGGCTCAACATGAGGAAACAATTAGGAGCCATTCGAGGAGTAAAAGTTGGTGACAAGTTTCGATATAGAGCTCAACTAAATATCGTTGGGCTTCATCGACATTTCACCAATGGAATTGATTATATAAAGAGCAGAGATGGGAAAATACTAGTCACAAGTATTGTTGATTCTGGTCGTTATGCCAACAATATGCAATGTTCCGATGTATTGATCTATTCTGGTGAAGGTGGAAATTCCCCGTTTAATAAATTGAAACCAACAGATCAGACACTTGAGCGTGGAAACCTTGCATTGAAGAATAGCACAGAAGCACAAACTCCTGTAAGGGTAATCCGCACCTTTAAACTTTCAAAGAGTTCATGTTATGTTTACTATGGTCTGTACATCGTAGAGCATCTTTCAAAAGAAAGGGGGCAATTTGGTAAGATGGTTTATAAATTTAGGTTGAGAAGGAAGGCAGGACAACCAGAAATAACATTCAAACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 ko04211 map00310 map04211
Pfam Domains
Protein Families
Pre-SET SAD_SRA SET

Protein Analysis

398

Amino Acids

44.99

Weight (kDa)

9.56

Isoelectric Point (pI)

33.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAD_SRA PF02182 244 - 391 7.3e-45 SAD/SRA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1143
Acc36I ACCTGC 1 cut(s) 385
AccBSI CCGCTC 3 cut(s) 38, 101, 125
AccI GTMKAC 1 cut(s) 428
AccII CGCG 1 cut(s) 297
AciI CCGC 5 cut(s) 36, 99, 123, 297, 1042
AclWI GGATC 3 cut(s) 307, 528, 566
AcsI RAATTY 2 cut(s) 940, 1145
AcuI CTGAAG 1 cut(s) 272
AfaI GTAC 2 cut(s) 216, 1091
AfiI CCNNNNNNNGG 2 cut(s) 255, 256
AgsI TTSAA 7 cut(s) 353, 649, 961, 1003, 1059, 1110, 1189
AhlI ACTAGT 1 cut(s) 856
AjiI CACGTC 1 cut(s) 137
AjnI CCWGG 1 cut(s) 154
AluBI AGCT 1 cut(s) 779
AluI AGCT 1 cut(s) 779
Alw21I GWGCWC 1 cut(s) 781
Alw26I GTCTC 1 cut(s) 484
AlwI GGATC 3 cut(s) 307, 528, 566
AlwNI CAGNNNCTG 1 cut(s) 493
AoxI GGCC 1 cut(s) 201
ApeKI GCWGC 4 cut(s) 56, 313, 380, 680
ApoI RAATTY 2 cut(s) 940, 1145
AspLEI GCGC 2 cut(s) 297, 406
AsuHPI GGTGA 6 cut(s) 220, 335, 616, 770, 805, 941
BanII GRGCYC 1 cut(s) 781
BauI CACGAG 2 cut(s) 128, 408
BbsI GAAGAC 1 cut(s) 617
Bbv12I GWGCWC 1 cut(s) 781
BbvI GCAGC 4 cut(s) 68, 300, 367, 692
BccI CCATC 2 cut(s) 839, 1129
BciT130I CCWGG 1 cut(s) 156
BcoDI GTCTC 1 cut(s) 484
BcuI ACTAGT 1 cut(s) 856
BfaI CTAG 3 cut(s) 288, 555, 857
BfuAI ACCTGC 1 cut(s) 385
BglI GCCNNNNNGGC 1 cut(s) 200
BglII AGATCT 1 cut(s) 334
BisI GCNGC 5 cut(s) 36, 57, 314, 381, 681
BlsI GCNGC 5 cut(s) 37, 58, 315, 382, 682
Bme1390I CCNGG 1 cut(s) 156
BmgBI CACGTC 1 cut(s) 137
BmiI GGNNCC 1 cut(s) 736
BmrFI CCNGG 1 cut(s) 156
BmsI GCATC 2 cut(s) 610, 1111
BpiI GAAGAC 1 cut(s) 617
BpmI CTGGAG 1 cut(s) 515
BpuEI CTTGAG 2 cut(s) 185, 1001
BsaJI CCNNGG 2 cut(s) 204, 232
BsaWI WCCGGW 1 cut(s) 517
BsaXI ACNNNNNCTCC 2 cut(s) 738, 768
Bsc4I CCNNNNNNNGG 2 cut(s) 255, 256
Bse1I ACTGG 2 cut(s) 498, 562
Bse3DI GCAATG 1 cut(s) 908
BseBI CCWGG 1 cut(s) 156
BseDI CCNNGG 2 cut(s) 204, 232
BseGI GGATG 1 cut(s) 91
BseLI CCNNNNNNNGG 2 cut(s) 255, 256
BseMI GCAATG 1 cut(s) 908
BseNI ACTGG 2 cut(s) 498, 562
BseRI GAGGAG 1 cut(s) 759
BseXI GCAGC 4 cut(s) 68, 300, 367, 692
Bsh1236I CGCG 1 cut(s) 297
BshFI GGCC 1 cut(s) 203
BsiHKAI GWGCWC 1 cut(s) 781
BsiSI CCGG 1 cut(s) 518
BslFI GGGAC 1 cut(s) 123
BslI CCNNNNNNNGG 2 cut(s) 255, 256
BsmAI GTCTC 1 cut(s) 484
BsmFI GGGAC 1 cut(s) 123
BsmI GAATGC 1 cut(s) 332
BsnI GGCC 1 cut(s) 203
Bsp1286I GDGCHC 1 cut(s) 781
Bsp1407I TGTACA 1 cut(s) 1089
Bsp143I GATC 8 cut(s) 185, 299, 334, 520, 571, 592, 918, 970
Bsp19I CCATGG 1 cut(s) 204
BspACI CCGC 5 cut(s) 36, 99, 123, 297, 1042
BspANI GGCC 1 cut(s) 203
BspFNI CGCG 1 cut(s) 297
BspLI GGNNCC 1 cut(s) 736
BspMI ACCTGC 1 cut(s) 385
BspPI GGATC 3 cut(s) 307, 528, 566
BsrBI CCGCTC 3 cut(s) 38, 101, 125
BsrDI GCAATG 1 cut(s) 908
BsrGI TGTACA 1 cut(s) 1089
BsrI ACTGG 2 cut(s) 498, 562
BssECI CCNNGG 2 cut(s) 204, 232
BssMI GATC 8 cut(s) 185, 299, 334, 520, 571, 592, 918, 970
BssNAI GTATAC 1 cut(s) 429
BssSI CACGAG 2 cut(s) 128, 408
BssT1I CCWWGG 1 cut(s) 204
Bst1107I GTATAC 1 cut(s) 429
Bst2BI CACGAG 2 cut(s) 128, 408
Bst2UI CCWGG 1 cut(s) 156
Bst4CI ACNGT 3 cut(s) 80, 236, 1194
Bst6I CTCTTC 1 cut(s) 248
BstAUI TGTACA 1 cut(s) 1089
BstDSI CCRYGG 2 cut(s) 204, 232
BstF5I GGATG 1 cut(s) 91
BstFNI CGCG 1 cut(s) 297
BstHHI GCGC 2 cut(s) 297, 406
BstKTI GATC 8 cut(s) 188, 302, 337, 523, 574, 595, 921, 973
BstMAI GTCTC 1 cut(s) 484
BstMBI GATC 8 cut(s) 185, 299, 334, 520, 571, 592, 918, 970
BstMWI GCNNNNNNNGC 1 cut(s) 200
BstNI CCWGG 1 cut(s) 156
BstSCI CCNGG 1 cut(s) 154
BstUI CGCG 1 cut(s) 297
BstV1I GCAGC 4 cut(s) 68, 300, 367, 692
BstV2I GAAGAC 1 cut(s) 617
BstX2I RGATCY 1 cut(s) 334
BstYI RGATCY 1 cut(s) 334
BstZ17I GTATAC 1 cut(s) 429
BsuRI GGCC 1 cut(s) 203
BtgI CCRYGG 2 cut(s) 204, 232
BtrI CACGTC 1 cut(s) 137
BtsCI GGATG 1 cut(s) 91
BveI ACCTGC 1 cut(s) 385
CaiI CAGNNNCTG 1 cut(s) 493
CfoI GCGC 2 cut(s) 297, 406
Csp6I GTAC 2 cut(s) 215, 1090
CviAII CATG 4 cut(s) 205, 218, 718, 1068
CviJI RGCY 9 cut(s) 35, 59, 194, 203, 313, 712, 737, 779, 799
CviKI_1 RGCY 9 cut(s) 35, 59, 194, 203, 313, 712, 737, 779, 799
CviQI GTAC 2 cut(s) 215, 1090
DpnI GATC 8 cut(s) 187, 301, 336, 522, 573, 594, 920, 972
DpnII GATC 8 cut(s) 185, 299, 334, 520, 571, 592, 918, 970
DraI TTTAAA 1 cut(s) 1051
Eam1104I CTCTTC 1 cut(s) 248
EarI CTCTTC 1 cut(s) 248
Ecl136II GAGCTC 1 cut(s) 779
Eco130I CCWWGG 1 cut(s) 204
Eco24I GRGCYC 1 cut(s) 781
Eco53kI GAGCTC 1 cut(s) 779
Eco57I CTGAAG 1 cut(s) 272
EcoICRI GAGCTC 1 cut(s) 779
EcoRII CCWGG 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 204
EcoT22I ATGCAT 1 cut(s) 625
EcoT38I GRGCYC 1 cut(s) 781
ErhI CCWWGG 1 cut(s) 204
FaeI CATG 4 cut(s) 208, 221, 721, 1071
FaqI GGGAC 1 cut(s) 123
FatI CATG 4 cut(s) 204, 217, 717, 1067
FblI GTMKAC 1 cut(s) 428
Fnu4HI GCNGC 5 cut(s) 36, 57, 314, 381, 681
FokI GGATG 1 cut(s) 98
FriOI GRGCYC 1 cut(s) 781
Fsp4HI GCNGC 5 cut(s) 36, 57, 314, 381, 681
FspBI CTAG 3 cut(s) 288, 555, 857
GlaI GCGC 2 cut(s) 296, 405
GluI GCNGC 5 cut(s) 36, 57, 314, 381, 681
GsuI CTGGAG 1 cut(s) 515
HaeIII GGCC 1 cut(s) 203
HapII CCGG 1 cut(s) 518
HhaI GCGC 2 cut(s) 297, 406
Hin1II CATG 4 cut(s) 208, 221, 721, 1071
Hin6I GCGC 2 cut(s) 295, 404
HinP1I GCGC 2 cut(s) 295, 404
HincII GTYRAC 1 cut(s) 567
HindII GTYRAC 1 cut(s) 567
HinfI GANTC 4 cut(s) 131, 167, 584, 875
HpaII CCGG 1 cut(s) 518
HphI GGTGA 6 cut(s) 220, 335, 616, 770, 805, 941
Hpy166II GTNNAC 4 cut(s) 429, 509, 567, 1078
Hpy188I TCNGA 4 cut(s) 190, 489, 910, 975
Hpy188III TCNNGA 6 cut(s) 104, 128, 164, 338, 410, 575
Hpy8I GTNNAC 4 cut(s) 429, 509, 567, 1078
HpyAV CCTTC 8 cut(s) 120, 151, 293, 535, 695, 926, 1152, 1156
HpyCH4III ACNGT 3 cut(s) 80, 236, 1194
HpyCH4IV ACGT 1 cut(s) 136
HpyCH4V TGCA 6 cut(s) 316, 458, 600, 623, 901, 998
HpyF10VI GCNNNNNNNGC 1 cut(s) 200
HpySE526I ACGT 1 cut(s) 136
Hsp92II CATG 4 cut(s) 208, 221, 721, 1071
HspAI GCGC 2 cut(s) 295, 404
Kzo9I GATC 8 cut(s) 185, 299, 334, 520, 571, 592, 918, 970
LmnI GCTCC 2 cut(s) 43, 734
Lsp1109I GCAGC 4 cut(s) 68, 300, 367, 692
LweI GCATC 2 cut(s) 610, 1111
MaeI CTAG 3 cut(s) 288, 555, 857
MaeII ACGT 1 cut(s) 136
MaeIII GTNAC 5 cut(s) 74, 132, 557, 758, 859
MalI GATC 8 cut(s) 187, 301, 336, 522, 573, 594, 920, 972
MbiI CCGCTC 3 cut(s) 38, 101, 125
MboI GATC 8 cut(s) 185, 299, 334, 520, 571, 592, 918, 970
MboII GAAGA 6 cut(s) 265, 344, 397, 619, 622, 1015
MflI RGATCY 1 cut(s) 334
MhlI GDGCHC 1 cut(s) 781
MluCI AATT 9 cut(s) 481, 658, 684, 728, 822, 940, 956, 1124, 1145
MlyI GAGTC 3 cut(s) 140, 176, 593
MnlI CCTC 8 cut(s) 5, 181, 249, 284, 417, 484, 714, 737
Mph1103I ATGCAT 1 cut(s) 625
MseI TTAA 5 cut(s) 93, 198, 692, 951, 1050
MspI CCGG 1 cut(s) 518
MspR9I CCNGG 1 cut(s) 156
Mva1269I GAATGC 1 cut(s) 332
MvaI CCWGG 1 cut(s) 156
MvnI CGCG 1 cut(s) 297
MwoI GCNNNNNNNGC 1 cut(s) 200
NcoI CCATGG 1 cut(s) 204
NdeII GATC 8 cut(s) 185, 299, 334, 520, 571, 592, 918, 970
NlaIII CATG 4 cut(s) 208, 221, 721, 1071
NlaIV GGNNCC 1 cut(s) 736
NmuCI GTSAC 4 cut(s) 74, 132, 758, 859
NsiI ATGCAT 1 cut(s) 625
PctI GAATGC 1 cut(s) 332
PfeI GAWTC 1 cut(s) 875
PkrI GCNGC 5 cut(s) 37, 58, 315, 382, 682
PleI GAGTC 3 cut(s) 139, 175, 592
PpsI GAGTC 3 cut(s) 139, 175, 592
PsiI TTATAA 1 cut(s) 1143
Psp124BI GAGCTC 1 cut(s) 781
Psp6I CCWGG 1 cut(s) 154
PspGI CCWGG 1 cut(s) 154
PspN4I GGNNCC 1 cut(s) 736
PstNI CAGNNNCTG 1 cut(s) 493
PsuI RGATCY 1 cut(s) 334
RsaI GTAC 2 cut(s) 216, 1091
RsaNI GTAC 2 cut(s) 215, 1090
SacI GAGCTC 1 cut(s) 781
SaqAI TTAA 5 cut(s) 93, 198, 692, 951, 1050
SatI GCNGC 5 cut(s) 36, 57, 314, 381, 681
Sau3AI GATC 8 cut(s) 185, 299, 334, 520, 571, 592, 918, 970
SchI GAGTC 3 cut(s) 140, 176, 593
ScrFI CCNGG 1 cut(s) 156
SduI GDGCHC 1 cut(s) 781
SfaNI GCATC 2 cut(s) 610, 1111
SmlI CTYRAG 2 cut(s) 164, 980
SmoI CTYRAG 2 cut(s) 164, 980
SpeI ACTAGT 1 cut(s) 856
Sse9I AATT 9 cut(s) 481, 658, 684, 728, 822, 940, 956, 1124, 1145
SsiI CCGC 5 cut(s) 36, 99, 123, 297, 1042
SspI AATATT 1 cut(s) 444
SspMI CTAG 3 cut(s) 288, 555, 857
SstI GAGCTC 1 cut(s) 781
StyD4I CCNGG 1 cut(s) 154
StyI CCWWGG 1 cut(s) 204
TaaI ACNGT 3 cut(s) 80, 236, 1194
TaiI ACGT 1 cut(s) 139
TaqI TCGA 7 cut(s) 17, 113, 144, 277, 742, 769, 805
TasI AATT 9 cut(s) 481, 658, 684, 728, 822, 940, 956, 1124, 1145
TatI WGTACW 2 cut(s) 214, 1089
TauI GCSGC 1 cut(s) 38
TfiI GAWTC 1 cut(s) 875
Tru1I TTAA 5 cut(s) 93, 198, 692, 951, 1050
Tru9I TTAA 5 cut(s) 93, 198, 692, 951, 1050
TseFI GTSAC 4 cut(s) 74, 132, 758, 859
TseI GCWGC 4 cut(s) 56, 313, 380, 680
Tsp45I GTSAC 4 cut(s) 74, 132, 758, 859
TspDTI ATGAA 4 cut(s) 387, 714, 791, 1056
XapI RAATTY 2 cut(s) 940, 1145
XcmI CCANNNNNNNNNTGG 1 cut(s) 202
XmiI GTMKAC 1 cut(s) 428
XspI CTAG 3 cut(s) 288, 555, 857
Zsp2I ATGCAT 1 cut(s) 625
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.