FvH4_7g26780

SAD/SRA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0002400
Physical Location & Seq
Reverse (-)
20162276 .. 20164751
2476 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g26780.t3

Sequence Viewer

Length: 1008 bp
ATGGTTTCACTGAAAACACCTGGAAAAGAGAACGGGTTTCGTCCCAATCTTAAGAGGCTTAGAGTTGATGCAGTTCGAGATTTCCCTGAAGGTTGTGGACGAGTTGTGCCTCGAGTGCAGCCAAGTAAATGTGAAGAGAGTTATGGAGATATGAACACATTACCAAGTAAAAACCACCCCCTGTCTAGTCATAGAGTTGCTATTGATGTTGTTCGAGATTTTCCTGAAGGTTGTAAAATGGTAGGATCTTATTTGAAGTATGCTGGAAGGAAGAGTTTGATGGTTCCATTTGTCAAGGATAAAGAAGGTGAGCGGCATGTTGTTTGTAACAATTTCGGTACTGCAGACGTGGTTGATAAAGCTGAAATTAGGGTGAAGAAAGCTTTGGCTGCATATCAAGAGACGTTGACCAAGATGGGTGGACAGTGTGATGCTAATTCTGACAAACTAGAGGGTTGGAAATTATACACTGAAGCAGCAATGTACCTCAAGAAGAAATATAAATGGGTTAACACGAAGAAACAAATAGGGCATATTCCAGGAGTGAAGGTTGGTGACAAGTTCCAGTATAGAACTGAATTAGCGATTGTTGGCCTTCATAGTCACTTTCAATGTGGTATTGATTATATGACGAAGAACGGGAATCCAATTGCCACAAGTGTGGTTGAATCTGGCCGCTATGCCAACAAGACAAAATCCCATGATGTGCTGATATACACAGGTCAAGGTGGAAATCCAAAGGTTACAAAAGGGAAAGCAGAAGACCAAAAGGCCAAGCATGGAAATCTGGCACTGATGAATAGCAAGGCTGCAAGAACTCCTGTGAGGGTAATCCGAAGCTACAAATTTGCAGAGGAATCAGGTTATGTGTATGATGGTCTTTATATTGTGGATGATTACTGGCAAAAAAGAGGGGAATTTGGTAAACTTGTGTATGAATTTTTGTTGAGGAGGAATTCAGATCAACCGAAATCTCACATTTTGCAACAGTTGGTGATGCCAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 ko04211 map00310 map04211
Pfam Domains
Protein Families
Pre-SET SAD_SRA SET

Protein Analysis

336

Amino Acids

37.8

Weight (kDa)

9.59

Isoelectric Point (pI)

29.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAD_SRA PF02182 176 - 322 3.6e-49 SAD/SRA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 313
AciI CCGC 2 cut(s) 313, 676
AclWI GGATC 1 cut(s) 253
AcoI YGGCCR 1 cut(s) 673
AcsI RAATTY 4 cut(s) 845, 917, 938, 955
AcuI CTGAAG 3 cut(s) 108, 246, 492
AfaI GTAC 2 cut(s) 340, 485
AflII CTTAAG 1 cut(s) 50
AgsI TTSAA 3 cut(s) 256, 611, 668
AjiI CACGTC 1 cut(s) 349
AjnI CCWGG 2 cut(s) 19, 538
AjuI GAANNNNNNNTTGG 2 cut(s) 368, 400
AleI CACNNNNGTG 1 cut(s) 659
AluBI AGCT 3 cut(s) 362, 383, 840
AluI AGCT 3 cut(s) 362, 383, 840
Alw26I GTCTC 1 cut(s) 395
AlwI GGATC 1 cut(s) 253
Ama87I CYCGRG 1 cut(s) 111
AoxI GGCC 3 cut(s) 592, 673, 771
ApeKI GCWGC 4 cut(s) 118, 389, 476, 809
ApoI RAATTY 4 cut(s) 845, 917, 938, 955
AsuHPI GGTGA 4 cut(s) 320, 385, 566, 1006
AvaI CYCGRG 1 cut(s) 111
BbsI GAAGAC 1 cut(s) 768
BbvI GCAGC 4 cut(s) 130, 376, 488, 796
BccI CCATC 3 cut(s) 274, 409, 869
BciT130I CCWGG 2 cut(s) 21, 540
BcoDI GTCTC 1 cut(s) 395
BfaI CTAG 2 cut(s) 186, 449
BfmI CTRYAG 1 cut(s) 342
BfrI CTTAAG 1 cut(s) 50
BisI GCNGC 6 cut(s) 119, 314, 390, 477, 676, 810
BlsI GCNGC 6 cut(s) 120, 315, 391, 478, 677, 811
Bme1390I CCNGG 2 cut(s) 21, 540
BmeT110I CYCGRG 1 cut(s) 111
BmgBI CACGTC 1 cut(s) 349
BmiI GGNNCC 1 cut(s) 285
BmrFI CCNGG 2 cut(s) 21, 540
BmsI GCATC 3 cut(s) 58, 421, 987
BpiI GAAGAC 1 cut(s) 768
BpuEI CTTGAG 1 cut(s) 473
BsaXI ACNNNNNCTCC 2 cut(s) 534, 564
Bse1I ACTGG 2 cut(s) 565, 905
Bse3DI GCAATG 1 cut(s) 486
BseBI CCWGG 2 cut(s) 21, 540
BseGI GGATG 1 cut(s) 898
BseMI GCAATG 1 cut(s) 486
BseNI ACTGG 2 cut(s) 565, 905
BseRI GAGGAG 1 cut(s) 964
BseXI GCAGC 4 cut(s) 130, 376, 488, 796
BsgI GTGCAG 1 cut(s) 137
BshFI GGCC 3 cut(s) 594, 675, 773
BsiHKCI CYCGRG 1 cut(s) 111
BslFI GGGAC 1 cut(s) 27
BsmAI GTCTC 1 cut(s) 395
BsmBI CGTCTC 1 cut(s) 395
BsmFI GGGAC 1 cut(s) 27
BsnI GGCC 3 cut(s) 594, 675, 773
BsoBI CYCGRG 1 cut(s) 111
Bsp143I GATC 2 cut(s) 245, 961
BspACI CCGC 2 cut(s) 313, 676
BspANI GGCC 3 cut(s) 594, 675, 773
BspLI GGNNCC 1 cut(s) 285
BspMAI CTGCAG 1 cut(s) 346
BspPI GGATC 1 cut(s) 253
BspTI CTTAAG 1 cut(s) 50
BsrBI CCGCTC 1 cut(s) 313
BsrDI GCAATG 1 cut(s) 486
BsrI ACTGG 2 cut(s) 565, 905
BssMI GATC 2 cut(s) 245, 961
Bst2UI CCWGG 2 cut(s) 21, 540
Bst4CI ACNGT 2 cut(s) 426, 990
Bst6I CTCTTC 2 cut(s) 129, 266
BstAFI CTTAAG 1 cut(s) 50
BstDEI CTNAG 1 cut(s) 59
BstF5I GGATG 1 cut(s) 898
BstKTI GATC 2 cut(s) 248, 964
BstMAI GTCTC 1 cut(s) 395
BstMBI GATC 2 cut(s) 245, 961
BstMWI GCNNNNNNNGC 2 cut(s) 115, 389
BstNI CCWGG 2 cut(s) 21, 540
BstNSI RCATGY 1 cut(s) 320
BstSCI CCNGG 2 cut(s) 19, 538
BstSFI CTRYAG 1 cut(s) 342
BstV1I GCAGC 4 cut(s) 130, 376, 488, 796
BstV2I GAAGAC 1 cut(s) 768
BstX2I RGATCY 1 cut(s) 245
BstXI CCANNNNNNTGG 1 cut(s) 661
BstYI RGATCY 1 cut(s) 245
BsuRI GGCC 3 cut(s) 594, 675, 773
BtrI CACGTC 1 cut(s) 349
BtsCI GGATG 1 cut(s) 898
BtsIMutI CAGTG 4 cut(s) 8, 431, 468, 791
Csp6I GTAC 2 cut(s) 339, 484
CspCI CAANNNNNGTGG 2 cut(s) 400, 435
CviAII CATG 3 cut(s) 317, 701, 779
CviQI GTAC 2 cut(s) 339, 484
DdeI CTNAG 1 cut(s) 59
DpnI GATC 2 cut(s) 247, 963
DpnII GATC 2 cut(s) 245, 961
EaeI YGGCCR 1 cut(s) 673
Eam1104I CTCTTC 2 cut(s) 129, 266
EarI CTCTTC 2 cut(s) 129, 266
Eco57I CTGAAG 3 cut(s) 108, 246, 492
Eco88I CYCGRG 1 cut(s) 111
EcoRI GAATTC 1 cut(s) 955
EcoRII CCWGG 2 cut(s) 19, 538
Esp3I CGTCTC 1 cut(s) 395
FaeI CATG 3 cut(s) 320, 704, 782
FaqI GGGAC 1 cut(s) 27
FatI CATG 3 cut(s) 316, 700, 778
Fnu4HI GCNGC 6 cut(s) 119, 314, 390, 477, 676, 810
FokI GGATG 1 cut(s) 905
Fsp4HI GCNGC 6 cut(s) 119, 314, 390, 477, 676, 810
FspBI CTAG 2 cut(s) 186, 449
GluI GCNGC 6 cut(s) 119, 314, 390, 477, 676, 810
HaeIII GGCC 3 cut(s) 594, 675, 773
Hin1II CATG 3 cut(s) 320, 704, 782
HincII GTYRAC 2 cut(s) 408, 511
HindII GTYRAC 2 cut(s) 408, 511
HindIII AAGCTT 1 cut(s) 381
HinfI GANTC 3 cut(s) 643, 668, 857
HpaI GTTAAC 1 cut(s) 511
HphI GGTGA 4 cut(s) 320, 385, 566, 1006
Hpy166II GTNNAC 5 cut(s) 98, 408, 422, 511, 926
Hpy188I TCNGA 3 cut(s) 442, 836, 961
Hpy188III TCNNGA 5 cut(s) 77, 215, 224, 398, 490
Hpy8I GTNNAC 5 cut(s) 98, 408, 422, 511, 926
HpyAV CCTTC 6 cut(s) 83, 221, 261, 299, 541, 605
HpyCH4III ACNGT 2 cut(s) 426, 990
HpyCH4IV ACGT 2 cut(s) 348, 404
HpyCH4V TGCA 7 cut(s) 71, 118, 344, 392, 812, 851, 985
HpyF10VI GCNNNNNNNGC 2 cut(s) 115, 389
HpyF3I CTNAG 1 cut(s) 59
HpySE526I ACGT 2 cut(s) 348, 404
Hsp92II CATG 3 cut(s) 320, 704, 782
KspAI GTTAAC 1 cut(s) 511
Kzo9I GATC 2 cut(s) 245, 961
Lsp1109I GCAGC 4 cut(s) 130, 376, 488, 796
LweI GCATC 3 cut(s) 58, 421, 987
MaeI CTAG 2 cut(s) 186, 449
MaeII ACGT 2 cut(s) 348, 404
MaeIII GTNAC 4 cut(s) 326, 554, 602, 742
MalI GATC 2 cut(s) 247, 963
MbiI CCGCTC 1 cut(s) 313
MboI GATC 2 cut(s) 245, 961
MboII GAAGA 7 cut(s) 146, 283, 388, 505, 529, 646, 773
MfeI CAATTG 1 cut(s) 648
MflI RGATCY 1 cut(s) 245
MmeI TCCRAC 1 cut(s) 437
MnlI CCTC 9 cut(s) 48, 120, 445, 497, 819, 847, 905, 942, 945
MseI TTAA 2 cut(s) 51, 510
MslI CAYNNNNRTG 1 cut(s) 659
MspCI CTTAAG 1 cut(s) 50
MspR9I CCNGG 2 cut(s) 21, 540
MunI CAATTG 1 cut(s) 648
MvaI CCWGG 2 cut(s) 21, 540
MwoI GCNNNNNNNGC 2 cut(s) 115, 389
NdeII GATC 2 cut(s) 245, 961
NlaIII CATG 3 cut(s) 320, 704, 782
NlaIV GGNNCC 1 cut(s) 285
NmuCI GTSAC 2 cut(s) 554, 602
NspI RCATGY 1 cut(s) 320
OliI CACNNNNGTG 1 cut(s) 659
PaeR7I CTCGAG 1 cut(s) 111
PfeI GAWTC 3 cut(s) 643, 668, 857
PfoI TCCNGGA 1 cut(s) 538
PkrI GCNGC 6 cut(s) 120, 315, 391, 478, 677, 811
Psp6I CCWGG 2 cut(s) 19, 538
PspGI CCWGG 2 cut(s) 19, 538
PspN4I GGNNCC 1 cut(s) 285
PspXI VCTCGAGB 1 cut(s) 111
PstI CTGCAG 1 cut(s) 346
PsuI RGATCY 1 cut(s) 245
RsaI GTAC 2 cut(s) 340, 485
RsaNI GTAC 2 cut(s) 339, 484
RseI CAYNNNNRTG 1 cut(s) 659
SaqAI TTAA 2 cut(s) 51, 510
SatI GCNGC 6 cut(s) 119, 314, 390, 477, 676, 810
Sau3AI GATC 2 cut(s) 245, 961
ScrFI CCNGG 2 cut(s) 21, 540
SfaNI GCATC 3 cut(s) 58, 421, 987
SfcI CTRYAG 1 cut(s) 342
Sfr274I CTCGAG 1 cut(s) 111
SlaI CTCGAG 1 cut(s) 111
SmiMI CAYNNNNRTG 1 cut(s) 659
SmlI CTYRAG 3 cut(s) 50, 111, 488
SmoI CTYRAG 3 cut(s) 50, 111, 488
SsiI CCGC 2 cut(s) 313, 676
SspMI CTAG 2 cut(s) 186, 449
StyD4I CCNGG 2 cut(s) 19, 538
TaaI ACNGT 2 cut(s) 426, 990
TaiI ACGT 2 cut(s) 351, 407
TaqI TCGA 3 cut(s) 76, 112, 214
TauI GCSGC 2 cut(s) 316, 678
TfiI GAWTC 3 cut(s) 643, 668, 857
Tru1I TTAA 2 cut(s) 51, 510
Tru9I TTAA 2 cut(s) 51, 510
TscAI CASTG 4 cut(s) 15, 431, 475, 798
TseFI GTSAC 2 cut(s) 554, 602
TseI GCWGC 4 cut(s) 118, 389, 476, 809
Tsp45I GTSAC 2 cut(s) 554, 602
TspDTI ATGAA 4 cut(s) 167, 587, 812, 951
TspRI CASTG 4 cut(s) 15, 431, 475, 798
Vha464I CTTAAG 1 cut(s) 50
XapI RAATTY 4 cut(s) 845, 917, 938, 955
XceI RCATGY 1 cut(s) 320
XhoI CTCGAG 1 cut(s) 111
XspI CTAG 2 cut(s) 186, 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.