RchiOBHm_Chr6g0292341

histone-lysine N-methyltransferase, H3 lysine-9 specific

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0002400
Physical Location & Seq
Reverse (-)
55257823 .. 55258497
675 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26233

Sequence Viewer

Length: 675 bp
ATGCATGCGGAGTTTACTAGTCAAAAGTCGGTGGAAGTGGAAAATAAAAATCGTAACAAGGTCAAGGGGGCTTTGGAAGCCTATAGAGAGATATTGACTAAGTCCGAGGCACAAAACTGTAATTGGAGTTACATTAAAGCAGCAATGGATCTCAAAAAACAAGGAAAATGGGTTAACAAGATGAAGCAAGTAGGATCGATTGCAGGAGTAAAAGTTGGTGATAGGTTTCGACATAGAGCTCAACTAACCATTGTTGGTCTTCATCAACAATTTACATGTGGTATTGATTATATGTGGAGGAATGACGGAAAAATTTTGGCCACAAGTATTGTTGATTCTGGTCGGTATGTTAACAATTTGCAATCTTCTGATATACTGATCTACTCTGGTCAAGGTGGAAAGTCTCTGTTTCATAAAACTAAACCGACATATCAAACTAAACCGACAGATCAAATAATGCAAGGTGGAAACCTTGCATTAAGGAATAGCAAAGAAGAAGGAACTCCTATAAGGGTAATTCGAAGGTTGAAACATTCTAAGGGTTCGTGTTATGTTTACTATGGATTATACACTGTAGAAAGAGTTCTGCAAGAAAGACAACTTGGTATTATGATCTATAAATTTATGTTGAGAAGGAAGTCGGGACAACCAGAGCTTTCATTTGACAGTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 ko04211 map00310 map04211
Pfam Domains
Protein Families
Pre-SET SAD_SRA SET

Protein Analysis

224

Amino Acids

25.61

Weight (kDa)

9.88

Isoelectric Point (pI)

40.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAD_SRA PF02182 64 - 216 6.7e-41 SAD/SRA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 8
AclWI GGATC 2 cut(s) 156, 202
AcoI YGGCCR 1 cut(s) 318
AcsI RAATTY 2 cut(s) 312, 620
AflIII ACRYGT 1 cut(s) 275
AgsI TTSAA 1 cut(s) 529
AhlI ACTAGT 1 cut(s) 17
AjuI GAANNNNNNNTTGG 2 cut(s) 585, 617
AluBI AGCT 2 cut(s) 239, 655
AluI AGCT 2 cut(s) 239, 655
Alw21I GWGCWC 1 cut(s) 241
Alw26I GTCTC 1 cut(s) 408
AlwI GGATC 2 cut(s) 156, 202
AoxI GGCC 1 cut(s) 318
ApeKI GCWGC 1 cut(s) 140
ApoI RAATTY 2 cut(s) 312, 620
Asp700I GAANNNNTTC 1 cut(s) 582
AsuHPI GGTGA 1 cut(s) 230
AsuII TTCGAA 1 cut(s) 520
BalI TGGCCA 1 cut(s) 320
BanII GRGCYC 1 cut(s) 241
BbsI GAAGAC 1 cut(s) 251
Bbv12I GWGCWC 1 cut(s) 241
BbvI GCAGC 1 cut(s) 152
BcoDI GTCTC 1 cut(s) 408
BcuI ACTAGT 1 cut(s) 17
BfaI CTAG 1 cut(s) 18
BfmI CTRYAG 2 cut(s) 82, 573
BisI GCNGC 1 cut(s) 141
BlsI GCNGC 1 cut(s) 142
BpiI GAAGAC 1 cut(s) 251
Bpu14I TTCGAA 1 cut(s) 520
Bsa29I ATCGAT 1 cut(s) 197
BsaJI CCNNGG 1 cut(s) 105
BsaXI ACNNNNNCTCC 2 cut(s) 198, 228
Bse3DI GCAATG 1 cut(s) 150
BseCI ATCGAT 1 cut(s) 197
BseDI CCNNGG 1 cut(s) 105
BseMI GCAATG 1 cut(s) 150
BseXI GCAGC 1 cut(s) 152
BshFI GGCC 1 cut(s) 320
BshVI ATCGAT 1 cut(s) 197
BsiHKAI GWGCWC 1 cut(s) 241
BslFI GGGAC 1 cut(s) 657
BsmAI GTCTC 1 cut(s) 408
BsmFI GGGAC 1 cut(s) 657
BsnI GGCC 1 cut(s) 320
Bsp119I TTCGAA 1 cut(s) 520
Bsp1286I GDGCHC 1 cut(s) 241
Bsp143I GATC 5 cut(s) 148, 194, 378, 448, 612
BspACI CCGC 1 cut(s) 8
BspANI GGCC 1 cut(s) 320
BspDI ATCGAT 1 cut(s) 197
BspPI GGATC 2 cut(s) 156, 202
BspT104I TTCGAA 1 cut(s) 520
BsrDI GCAATG 1 cut(s) 150
BssECI CCNNGG 1 cut(s) 105
BssMI GATC 5 cut(s) 148, 194, 378, 448, 612
Bst4CI ACNGT 3 cut(s) 119, 574, 668
BstBI TTCGAA 1 cut(s) 520
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 2 cut(s) 99, 537
BstKTI GATC 5 cut(s) 151, 197, 381, 451, 615
BstMAI GTCTC 1 cut(s) 408
BstMBI GATC 5 cut(s) 148, 194, 378, 448, 612
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstNSI RCATGY 2 cut(s) 8, 279
BstSFI CTRYAG 2 cut(s) 82, 573
BstV1I GCAGC 1 cut(s) 152
BstV2I GAAGAC 1 cut(s) 251
BstX2I RGATCY 1 cut(s) 148
BstYI RGATCY 1 cut(s) 148
Bsu15I ATCGAT 1 cut(s) 197
BsuRI GGCC 1 cut(s) 320
BsuTUI ATCGAT 1 cut(s) 197
BtsIMutI CAGTG 1 cut(s) 570
Cac8I GCNNGC 1 cut(s) 6
ClaI ATCGAT 1 cut(s) 197
CspCI CAANNNNNGTGG 2 cut(s) 310, 345
CviAII CATG 2 cut(s) 5, 276
CviJI RGCY 5 cut(s) 71, 80, 239, 320, 655
CviKI_1 RGCY 5 cut(s) 71, 80, 239, 320, 655
DdeI CTNAG 2 cut(s) 99, 537
DpnI GATC 5 cut(s) 150, 196, 380, 450, 614
DpnII GATC 5 cut(s) 148, 194, 378, 448, 612
EaeI YGGCCR 1 cut(s) 318
Ecl136II GAGCTC 1 cut(s) 239
Eco24I GRGCYC 1 cut(s) 241
Eco53kI GAGCTC 1 cut(s) 239
EcoICRI GAGCTC 1 cut(s) 239
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 241
FaeI CATG 2 cut(s) 8, 279
FaqI GGGAC 1 cut(s) 657
FatI CATG 2 cut(s) 4, 275
Fnu4HI GCNGC 1 cut(s) 141
FriOI GRGCYC 1 cut(s) 241
Fsp4HI GCNGC 1 cut(s) 141
FspBI CTAG 1 cut(s) 18
GluI GCNGC 1 cut(s) 141
HaeIII GGCC 1 cut(s) 320
Hin1II CATG 2 cut(s) 8, 279
HincII GTYRAC 2 cut(s) 175, 352
HindII GTYRAC 2 cut(s) 175, 352
HinfI GANTC 1 cut(s) 335
HpaI GTTAAC 2 cut(s) 175, 352
HphI GGTGA 1 cut(s) 230
Hpy166II GTNNAC 4 cut(s) 15, 175, 352, 556
Hpy188I TCNGA 2 cut(s) 106, 370
Hpy188III TCNNGA 1 cut(s) 642
Hpy8I GTNNAC 4 cut(s) 15, 175, 352, 556
HpyAV CCTTC 3 cut(s) 491, 516, 627
HpyCH4III ACNGT 3 cut(s) 119, 574, 668
HpyCH4V TGCA 6 cut(s) 4, 203, 361, 460, 476, 589
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
HpyF3I CTNAG 2 cut(s) 99, 537
Hsp92II CATG 2 cut(s) 8, 279
KspAI GTTAAC 2 cut(s) 175, 352
Kzo9I GATC 5 cut(s) 148, 194, 378, 448, 612
LpnPI CCDG 4 cut(s) 189, 324, 372, 663
Lsp1109I GCAGC 1 cut(s) 152
MaeI CTAG 1 cut(s) 18
MaeIII GTNAC 2 cut(s) 53, 128
MalI GATC 5 cut(s) 150, 196, 380, 450, 614
MboI GATC 5 cut(s) 148, 194, 378, 448, 612
MboII GAAGA 3 cut(s) 251, 357, 506
MflI RGATCY 1 cut(s) 148
MhlI GDGCHC 1 cut(s) 241
MlsI TGGCCA 1 cut(s) 320
MluCI AATT 6 cut(s) 121, 269, 312, 355, 516, 620
MluNI TGGCCA 1 cut(s) 320
MnlI CCTC 2 cut(s) 100, 291
Mox20I TGGCCA 1 cut(s) 320
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 582
MscI TGGCCA 1 cut(s) 320
MseI TTAA 4 cut(s) 135, 174, 351, 479
Msp20I TGGCCA 1 cut(s) 320
MwoI GCNNNNNNNGC 1 cut(s) 77
NdeII GATC 5 cut(s) 148, 194, 378, 448, 612
NlaIII CATG 2 cut(s) 8, 279
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 8, 279
NspV TTCGAA 1 cut(s) 520
PaeI GCATGC 1 cut(s) 8
PciI ACATGT 1 cut(s) 275
PdmI GAANNNNTTC 1 cut(s) 582
PfeI GAWTC 1 cut(s) 335
PflFI GACNNNGTC 1 cut(s) 100
PkrI GCNGC 1 cut(s) 142
PscI ACATGT 1 cut(s) 275
Psp124BI GAGCTC 1 cut(s) 241
PsrI GAACNNNNNNTAC 2 cut(s) 567, 599
PsuI RGATCY 1 cut(s) 148
PsyI GACNNNGTC 1 cut(s) 100
SacI GAGCTC 1 cut(s) 241
SaqAI TTAA 4 cut(s) 135, 174, 351, 479
SatI GCNGC 1 cut(s) 141
Sau3AI GATC 5 cut(s) 148, 194, 378, 448, 612
SduI GDGCHC 1 cut(s) 241
SetI ASST 8 cut(s) 63, 227, 241, 397, 466, 474, 527, 657
SfcI CTRYAG 2 cut(s) 82, 573
SfuI TTCGAA 1 cut(s) 520
SpeI ACTAGT 1 cut(s) 17
SphI GCATGC 1 cut(s) 8
Sse9I AATT 6 cut(s) 121, 269, 312, 355, 516, 620
SsiI CCGC 1 cut(s) 8
SspMI CTAG 1 cut(s) 18
SstI GAGCTC 1 cut(s) 241
TaaI ACNGT 3 cut(s) 119, 574, 668
TaqI TCGA 3 cut(s) 197, 229, 520
TasI AATT 6 cut(s) 121, 269, 312, 355, 516, 620
TfiI GAWTC 1 cut(s) 335
Tru1I TTAA 4 cut(s) 135, 174, 351, 479
Tru9I TTAA 4 cut(s) 135, 174, 351, 479
TscAI CASTG 1 cut(s) 577
TseI GCWGC 1 cut(s) 140
TspDTI ATGAA 4 cut(s) 197, 251, 401, 648
TspGWI ACGGA 1 cut(s) 321
TspRI CASTG 1 cut(s) 577
Tth111I GACNNNGTC 1 cut(s) 100
XapI RAATTY 2 cut(s) 312, 620
XceI RCATGY 2 cut(s) 8, 279
XmnI GAANNNNTTC 1 cut(s) 582
XspI CTAG 1 cut(s) 18
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.