FvH4_7g26750

SAD/SRA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0002400
Physical Location & Seq
Reverse (-)
20146015 .. 20146440
426 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g26750.t1

Sequence Viewer

Length: 426 bp
ATGCGTGTTGTTGGCCTTCACGGTGACTATAACAAGGGTATCGATTGGTTGAAAGACACAAAAGGGAACATCATTGCGAAAAGTATCATCGATTCGCACCGTTACAAAAACAAGAGGATATATGCTGATCTCTTGATATACACTAGAGAAGGAGGGAATCTAGATGTCTCAAAGCAGGGAGAAAAGGATCAAGAGGCCAAAGATGAAAATCTTGCGCTGATGAACTGCTTCCCATCAACTCCCGTAAGGGTAATCCGGTATTATGAGATTGGTAGGGAATCATGGTATATCTACGAGGGTCTGTACACCATTGCTGATTACAAGCAACAAAAAGGCGGTCGTGGTTTTCATGAGTTTAAGTTTTTGATGATAAGGATTCCTAGTCAACCTAAACTCAAACTTCCTAAGGTGGTGATGCCAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 ko04211 map00310 map04211
Pfam Domains
Protein Families
Pre-SET SAD_SRA SET

Protein Analysis

142

Amino Acids

16.49

Weight (kDa)

9.52

Isoelectric Point (pI)

29.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAD_SRA PF02182 1 - 129 2.7e-27 SAD/SRA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 336
AclWI GGATC 1 cut(s) 195
AfaI GTAC 1 cut(s) 305
AgsI TTSAA 1 cut(s) 52
Alw26I GTCTC 1 cut(s) 172
AlwI GGATC 1 cut(s) 195
AoxI GGCC 2 cut(s) 13, 195
ArsI GACNNNNNNTTYG 2 cut(s) 322, 354
Asp700I GAANNNNTTC 1 cut(s) 227
AspLEI GCGC 1 cut(s) 217
AsuHPI GGTGA 2 cut(s) 35, 424
AxyI CCTNAGG 1 cut(s) 405
BaeI ACNNNNGTAYC 2 cut(s) 22, 55
BccI CCATC 1 cut(s) 241
BcoDI GTCTC 1 cut(s) 172
BfaI CTAG 3 cut(s) 144, 161, 381
BmsI GCATC 1 cut(s) 405
Bsa29I ATCGAT 2 cut(s) 42, 90
BsaBI GATNNNNATC 1 cut(s) 207
BsaWI WCCGGW 1 cut(s) 255
Bse21I CCTNAGG 1 cut(s) 405
Bse3DI GCAATG 2 cut(s) 72, 309
Bse8I GATNNNNATC 1 cut(s) 207
BseCI ATCGAT 2 cut(s) 42, 90
BseJI GATNNNNATC 1 cut(s) 207
BseMI GCAATG 2 cut(s) 72, 309
Bsh1285I CGRYCG 1 cut(s) 340
BshFI GGCC 2 cut(s) 15, 197
BshVI ATCGAT 2 cut(s) 42, 90
BsiEI CGRYCG 1 cut(s) 340
BsiSI CCGG 1 cut(s) 256
BsmAI GTCTC 1 cut(s) 172
BsnI GGCC 2 cut(s) 15, 197
Bsp1407I TGTACA 1 cut(s) 303
Bsp143I GATC 2 cut(s) 127, 187
BspACI CCGC 1 cut(s) 336
BspANI GGCC 2 cut(s) 15, 197
BspDI ATCGAT 2 cut(s) 42, 90
BspHI TCATGA 1 cut(s) 349
BspPI GGATC 1 cut(s) 195
BsrDI GCAATG 2 cut(s) 72, 309
BsrGI TGTACA 1 cut(s) 303
BssMI GATC 2 cut(s) 127, 187
Bst4CI ACNGT 2 cut(s) 23, 101
BstAUI TGTACA 1 cut(s) 303
BstDEI CTNAG 1 cut(s) 405
BstHHI GCGC 1 cut(s) 217
BstKTI GATC 2 cut(s) 130, 190
BstMAI GTCTC 1 cut(s) 172
BstMBI GATC 2 cut(s) 127, 187
BstMCI CGRYCG 1 cut(s) 340
Bsu15I ATCGAT 2 cut(s) 42, 90
Bsu36I CCTNAGG 1 cut(s) 405
BsuRI GGCC 2 cut(s) 15, 197
BsuTUI ATCGAT 2 cut(s) 42, 90
CciI TCATGA 1 cut(s) 349
CfoI GCGC 1 cut(s) 217
ClaI ATCGAT 2 cut(s) 42, 90
Csp6I GTAC 1 cut(s) 304
CviAII CATG 2 cut(s) 282, 350
CviJI RGCY 2 cut(s) 15, 197
CviKI_1 RGCY 2 cut(s) 15, 197
CviQI GTAC 1 cut(s) 304
DdeI CTNAG 1 cut(s) 405
DpnI GATC 2 cut(s) 129, 189
DpnII GATC 2 cut(s) 127, 187
Eco81I CCTNAGG 1 cut(s) 405
FaeI CATG 2 cut(s) 285, 353
FaiI YATR 8 cut(s) 30, 121, 123, 139, 264, 283, 288, 351
FatI CATG 2 cut(s) 281, 349
FspBI CTAG 3 cut(s) 144, 161, 381
GlaI GCGC 1 cut(s) 216
HaeIII GGCC 2 cut(s) 15, 197
HapII CCGG 1 cut(s) 256
HhaI GCGC 1 cut(s) 217
Hin1II CATG 2 cut(s) 285, 353
Hin6I GCGC 1 cut(s) 215
HinP1I GCGC 1 cut(s) 215
HincII GTYRAC 1 cut(s) 386
HindII GTYRAC 1 cut(s) 386
HinfI GANTC 4 cut(s) 92, 157, 278, 376
HpaII CCGG 1 cut(s) 256
HphI GGTGA 2 cut(s) 35, 424
Hpy166II GTNNAC 2 cut(s) 306, 386
Hpy188III TCNNGA 4 cut(s) 133, 161, 191, 350
Hpy8I GTNNAC 2 cut(s) 306, 386
HpyAV CCTTC 2 cut(s) 26, 143
HpyCH4III ACNGT 2 cut(s) 23, 101
HpyF3I CTNAG 1 cut(s) 405
Hsp92II CATG 2 cut(s) 285, 353
HspAI GCGC 1 cut(s) 215
Kzo9I GATC 2 cut(s) 127, 187
LpnPI CCDG 2 cut(s) 161, 269
LweI GCATC 1 cut(s) 405
MaeI CTAG 3 cut(s) 144, 161, 381
MaeIII GTNAC 2 cut(s) 23, 101
MalI GATC 2 cut(s) 129, 189
MboI GATC 2 cut(s) 127, 187
MnlI CCTC 4 cut(s) 108, 146, 187, 289
MroXI GAANNNNTTC 1 cut(s) 227
MseI TTAA 1 cut(s) 357
MspI CCGG 1 cut(s) 256
NdeII GATC 2 cut(s) 127, 187
NlaIII CATG 2 cut(s) 285, 353
NmuCI GTSAC 1 cut(s) 23
PagI TCATGA 1 cut(s) 349
PdmI GAANNNNTTC 1 cut(s) 227
PfeI GAWTC 4 cut(s) 92, 157, 278, 376
RsaI GTAC 1 cut(s) 305
RsaNI GTAC 1 cut(s) 304
SaqAI TTAA 1 cut(s) 357
Sau3AI GATC 2 cut(s) 127, 187
SetI ASST 2 cut(s) 391, 411
SfaNI GCATC 1 cut(s) 405
SsiI CCGC 1 cut(s) 336
SspMI CTAG 3 cut(s) 144, 161, 381
TaaI ACNGT 2 cut(s) 23, 101
TaqI TCGA 2 cut(s) 42, 90
TatI WGTACW 1 cut(s) 303
TfiI GAWTC 4 cut(s) 92, 157, 278, 376
Tru1I TTAA 1 cut(s) 357
Tru9I TTAA 1 cut(s) 357
TseFI GTSAC 1 cut(s) 23
Tsp45I GTSAC 1 cut(s) 23
TspDTI ATGAA 3 cut(s) 219, 236, 338
XbaI TCTAGA 1 cut(s) 160
XmnI GAANNNNTTC 1 cut(s) 227
XspI CTAG 3 cut(s) 144, 161, 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.