Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017023.1

Orthogroup ID

OG0002400

Physical Location & Seq

Genomic Coordinates Forward (+)

2392 .. 3509

Gene Structure 1118 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017023.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

atggccatagtgaaagtacatggaacaatacaccatggttgctttattcccctgaagagggcaagagttgatgttattcgacagcttcctagagggcgcggatcaaatgttaggcggcaaaagggtgaatgcgaagatcttgattatatcgttgaacctgctaataaagatgatgaacctgctgcgaagattgataaggtgtgtgcgcctcgtgaaaggattgataaggtaccatcgatgttgctaaaagatttttctatatcgagcaaggaaaatcagtatacaaggcacacaatatttagcaaggtcgtaccaagttctattgcctcaaataattgtcagagactggagagcaaaagtttaccaccagcggatcgccaatgccataatgagaaggtgtcttttgctagttaccggttgactgatcctgatgtggagtccaaagatcgttgcaaggtgaagaagacccttgatgcatataaggagatactgaccaagttcaacaaacgaaattgctcaacttacattttagcagcaattcgtttaaggaatgaaggaaaatggctcaacatgaggaaacaattaggagccattcgaggagtaaaagttggtgacaagtttcgatatagagctcaactaaatatcgttgggcttcatcgacatttcaccaatggaattgattatataaagagcagagatgggaaaatactagtcacaagtattgttgattctggtcgttatgccaacaatatgcaatgttccgatgtattgatctattctggtgaaggcggaaattccccgtttaataaatttaaaccaacagatcagacacttgagcgtggaaaccttgcattgaagaatagcacagaagcacaaactcctgtaagggtaatccgcacctttaaactttcaaagagttcatgttatgtttactatggtctatacatcgtagagcatctttcaaaagaaagggggcaatttggtaagatggtttataaatttaggttgagaaggaaggcaggacaaccagaaataactttcaaactgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

349

Amino Acids

39.93

Weight (kDa)

9.87

Isoelectric Point (pI)

29.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002400)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24480 FvH4_2g24480 FvH4_7g03510 FvH4_7g26750 FvH4_7g26780 FvH4_7g26780 FvH4_7g26780
pyrus_communis	pycom07g04430
rosa_chinensis	RchiOBHm_Chr1g0325811 RchiOBHm_Chr1g0373401 RchiOBHm_Chr6g0292341
rosa_laevigata	RLG00000012041 RLG00000026824 RLG00000030101
rosa_multiflora	Rmu_sc0001354.1_g000005 Rmu_sc0017023.1_g000001 Rmu_sc0019006.1_g000003
rosa_roxburghii	Rroxscaffold_4G00284230 Rroxscaffold_4G00324280
rosa_rugosa	Rorug01G0055100 Rorug01G0055200 Rorug01G0377500 Rorug06G0225500
rosa_samantha	Rh1AG071400 Rh1AG071500 Rh1AG386600 Rh1BG058400 Rh1BG350600 Rh1BG350700 Rh1BG350900 Rh1CG070900 Rh1CG363700 Rh1DG075600 Rh1DG075700 Rh1DG381400 Rh6AG338900 Rh6BG346000 Rh6CG353100 Rh6DG339000
rosa_wichuraiana	Rw1G005820 Rw1G034860 Rw6G029500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	996
Acc36I	ACCTGC	2 cut(s)	166, 187
Acc65I	GGTACC	1 cut(s)	229
AccB1I	GGYRCC	1 cut(s)	229
AccI	GTMKAC	1 cut(s)	281
AccII	CGCG	1 cut(s)	99
AciI	CCGC	5 cut(s)	99, 115, 371, 789, 895
AclWI	GGATC	3 cut(s)	109, 381, 419
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	793, 809, 998
AcuI	CTGAAG	1 cut(s)	74
AfaI	GTAC	3 cut(s)	18, 231, 312
AfiI	CCNNNNNNNGG	2 cut(s)	57, 58
AgeI	ACCGGT	1 cut(s)	414
AgsI	TTSAA	6 cut(s)	155, 502, 856, 912, 963, 1042
AhlI	ACTAGT	1 cut(s)	709
AluBI	AGCT	2 cut(s)	85, 632
AluI	AGCT	2 cut(s)	85, 632
Alw21I	GWGCWC	1 cut(s)	634
Alw26I	GTCTC	1 cut(s)	337
AlwI	GGATC	3 cut(s)	109, 381, 419
AlwNI	CAGNNNCTG	1 cut(s)	346
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	182, 533
ApoI	RAATTY	3 cut(s)	793, 809, 998
AsiGI	ACCGGT	1 cut(s)	414
Asp718I	GGTACC	1 cut(s)	229
AspLEI	GCGC	2 cut(s)	99, 208
AsuHPI	GGTGA	5 cut(s)	137, 469, 623, 658, 794
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	229
BanII	GRGCYC	1 cut(s)	634
BauI	CACGAG	1 cut(s)	210
BbsI	GAAGAC	1 cut(s)	470
Bbv12I	GWGCWC	1 cut(s)	634
BbvI	GCAGC	2 cut(s)	169, 545
BccI	CCATC	3 cut(s)	241, 692, 982
BcoDI	GTCTC	1 cut(s)	337
BcuI	ACTAGT	1 cut(s)	709
BfaI	CTAG	3 cut(s)	90, 408, 710
BfuAI	ACCTGC	2 cut(s)	166, 187
BglII	AGATCT	1 cut(s)	136
BisI	GCNGC	3 cut(s)	116, 183, 534
BlsI	GCNGC	3 cut(s)	117, 184, 535
BmiI	GGNNCC	2 cut(s)	231, 589
BmsI	GCATC	2 cut(s)	463, 964
BpiI	GAAGAC	1 cut(s)	470
BpmI	CTGGAG	1 cut(s)	368
BpuEI	CTTGAG	1 cut(s)	854
Bsa29I	ATCGAT	1 cut(s)	236
BsaJI	CCNNGG	1 cut(s)	34
BsaWI	WCCGGW	1 cut(s)	414
BsaXI	ACNNNNNCTCC	2 cut(s)	591, 621
Bsc4I	CCNNNNNNNGG	2 cut(s)	57, 58
Bse118I	RCCGGY	1 cut(s)	414
Bse1I	ACTGG	1 cut(s)	351
Bse3DI	GCAATG	1 cut(s)	761
BseCI	ATCGAT	1 cut(s)	236
BseDI	CCNNGG	1 cut(s)	34
BseLI	CCNNNNNNNGG	2 cut(s)	57, 58
BseMI	GCAATG	1 cut(s)	761
BseNI	ACTGG	1 cut(s)	351
BseRI	GAGGAG	1 cut(s)	612
BseXI	GCAGC	2 cut(s)	169, 545
Bsh1236I	CGCG	1 cut(s)	99
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	229
BshTI	ACCGGT	1 cut(s)	414
BshVI	ATCGAT	1 cut(s)	236
BsiHKAI	GWGCWC	1 cut(s)	634
BsiSI	CCGG	1 cut(s)	415
BslI	CCNNNNNNNGG	2 cut(s)	57, 58
BsmAI	GTCTC	1 cut(s)	337
BsmI	GAATGC	1 cut(s)	134
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	634
Bsp143I	GATC	7 cut(s)	101, 136, 373, 424, 445, 771, 823
Bsp19I	CCATGG	1 cut(s)	34
BspACI	CCGC	5 cut(s)	99, 115, 371, 789, 895
BspANI	GGCC	1 cut(s)	5
BspDI	ATCGAT	1 cut(s)	236
BspFNI	CGCG	1 cut(s)	99
BspLI	GGNNCC	2 cut(s)	231, 589
BspMI	ACCTGC	2 cut(s)	166, 187
BspPI	GGATC	3 cut(s)	109, 381, 419
BspT107I	GGYRCC	1 cut(s)	229
BsrDI	GCAATG	1 cut(s)	761
BsrFI	RCCGGY	1 cut(s)	414
BsrI	ACTGG	1 cut(s)	351
BssAI	RCCGGY	1 cut(s)	414
BssECI	CCNNGG	1 cut(s)	34
BssMI	GATC	7 cut(s)	101, 136, 373, 424, 445, 771, 823
BssNAI	GTATAC	1 cut(s)	282
BssSI	CACGAG	1 cut(s)	210
BssT1I	CCWWGG	1 cut(s)	34
Bst1107I	GTATAC	1 cut(s)	282
Bst2BI	CACGAG	1 cut(s)	210
Bst4CI	ACNGT	1 cut(s)	1047
Bst6I	CTCTTC	1 cut(s)	50
BstDSI	CCRYGG	1 cut(s)	34
BstFNI	CGCG	1 cut(s)	99
BstHHI	GCGC	2 cut(s)	99, 208
BstKTI	GATC	7 cut(s)	104, 139, 376, 427, 448, 774, 826
BstMAI	GTCTC	1 cut(s)	337
BstMBI	GATC	7 cut(s)	101, 136, 373, 424, 445, 771, 823
BstUI	CGCG	1 cut(s)	99
BstV1I	GCAGC	2 cut(s)	169, 545
BstV2I	GAAGAC	1 cut(s)	470
BstX2I	RGATCY	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	136
BstZ17I	GTATAC	1 cut(s)	282
Bsu15I	ATCGAT	1 cut(s)	236
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	236
BtgI	CCRYGG	1 cut(s)	34
BveI	ACCTGC	2 cut(s)	166, 187
CaiI	CAGNNNCTG	1 cut(s)	346
CfoI	GCGC	2 cut(s)	99, 208
Cfr10I	RCCGGY	1 cut(s)	414
ClaI	ATCGAT	1 cut(s)	236
Csp6I	GTAC	3 cut(s)	17, 230, 311
CspAI	ACCGGT	1 cut(s)	414
CviAII	CATG	4 cut(s)	20, 35, 571, 921
CviJI	RGCY	6 cut(s)	5, 85, 565, 590, 632, 652
CviKI_1	RGCY	6 cut(s)	5, 85, 565, 590, 632, 652
CviQI	GTAC	3 cut(s)	17, 230, 311
DpnI	GATC	7 cut(s)	103, 138, 375, 426, 447, 773, 825
DpnII	GATC	7 cut(s)	101, 136, 373, 424, 445, 771, 823
DraI	TTTAAA	2 cut(s)	814, 904
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
EciI	GGCGGA	1 cut(s)	804
Ecl136II	GAGCTC	1 cut(s)	632
Eco130I	CCWWGG	1 cut(s)	34
Eco24I	GRGCYC	1 cut(s)	634
Eco53kI	GAGCTC	1 cut(s)	632
Eco57I	CTGAAG	1 cut(s)	74
EcoICRI	GAGCTC	1 cut(s)	632
EcoT14I	CCWWGG	1 cut(s)	34
EcoT22I	ATGCAT	1 cut(s)	478
EcoT38I	GRGCYC	1 cut(s)	634
ErhI	CCWWGG	1 cut(s)	34
FaeI	CATG	4 cut(s)	23, 38, 574, 924
FatI	CATG	4 cut(s)	19, 34, 570, 920
FblI	GTMKAC	1 cut(s)	281
Fnu4HI	GCNGC	3 cut(s)	116, 183, 534
FriOI	GRGCYC	1 cut(s)	634
Fsp4HI	GCNGC	3 cut(s)	116, 183, 534
FspBI	CTAG	3 cut(s)	90, 408, 710
GlaI	GCGC	2 cut(s)	98, 207
GluI	GCNGC	3 cut(s)	116, 183, 534
GsuI	CTGGAG	1 cut(s)	368
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	415
HhaI	GCGC	2 cut(s)	99, 208
Hin1II	CATG	4 cut(s)	23, 38, 574, 924
Hin6I	GCGC	2 cut(s)	97, 206
HinP1I	GCGC	2 cut(s)	97, 206
HincII	GTYRAC	1 cut(s)	420
HindII	GTYRAC	1 cut(s)	420
HinfI	GANTC	2 cut(s)	437, 728
HpaII	CCGG	1 cut(s)	415
HphI	GGTGA	5 cut(s)	137, 469, 623, 658, 794
Hpy166II	GTNNAC	4 cut(s)	282, 362, 420, 931
Hpy188I	TCNGA	3 cut(s)	342, 763, 828
Hpy188III	TCNNGA	3 cut(s)	140, 212, 428
Hpy8I	GTNNAC	4 cut(s)	282, 362, 420, 931
HpyAV	CCTTC	5 cut(s)	388, 548, 779, 1005, 1009
HpyCH4III	ACNGT	1 cut(s)	1047
HpyCH4V	TGCA	4 cut(s)	453, 476, 754, 851
Hsp92II	CATG	4 cut(s)	23, 38, 574, 924
HspAI	GCGC	2 cut(s)	97, 206
KpnI	GGTACC	1 cut(s)	233
Kzo9I	GATC	7 cut(s)	101, 136, 373, 424, 445, 771, 823
LmnI	GCTCC	1 cut(s)	587
Lsp1109I	GCAGC	2 cut(s)	169, 545
LweI	GCATC	2 cut(s)	463, 964
MaeI	CTAG	3 cut(s)	90, 408, 710
MaeIII	GTNAC	3 cut(s)	410, 611, 712
MalI	GATC	7 cut(s)	103, 138, 375, 426, 447, 773, 825
MboI	GATC	7 cut(s)	101, 136, 373, 424, 445, 771, 823
MboII	GAAGA	6 cut(s)	67, 146, 199, 472, 475, 868
MflI	RGATCY	1 cut(s)	136
MhlI	GDGCHC	1 cut(s)	634
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	9 cut(s)	334, 511, 537, 581, 675, 793, 809, 977, 998
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	446
MnlI	CCTC	6 cut(s)	51, 86, 219, 337, 567, 590
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	478
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	545, 804, 813, 903
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	371
MspI	CCGG	1 cut(s)	415
Mva1269I	GAATGC	1 cut(s)	134
MvnI	CGCG	1 cut(s)	99
NcoI	CCATGG	1 cut(s)	34
NdeII	GATC	7 cut(s)	101, 136, 373, 424, 445, 771, 823
NlaIII	CATG	4 cut(s)	23, 38, 574, 924
NlaIV	GGNNCC	2 cut(s)	231, 589
NmuCI	GTSAC	2 cut(s)	611, 712
NsiI	ATGCAT	1 cut(s)	478
PctI	GAATGC	1 cut(s)	134
PfeI	GAWTC	1 cut(s)	728
PinAI	ACCGGT	1 cut(s)	414
PkrI	GCNGC	3 cut(s)	117, 184, 535
PleI	GAGTC	1 cut(s)	445
PpsI	GAGTC	1 cut(s)	445
PsiI	TTATAA	1 cut(s)	996
Psp124BI	GAGCTC	1 cut(s)	634
PspN4I	GGNNCC	2 cut(s)	231, 589
PstNI	CAGNNNCTG	1 cut(s)	346
PsuI	RGATCY	1 cut(s)	136
RsaI	GTAC	3 cut(s)	18, 231, 312
RsaNI	GTAC	3 cut(s)	17, 230, 311
SacI	GAGCTC	1 cut(s)	634
SaqAI	TTAA	4 cut(s)	545, 804, 813, 903
SatI	GCNGC	3 cut(s)	116, 183, 534
Sau3AI	GATC	7 cut(s)	101, 136, 373, 424, 445, 771, 823
SchI	GAGTC	1 cut(s)	446
SduI	GDGCHC	1 cut(s)	634
SfaNI	GCATC	2 cut(s)	463, 964
SmlI	CTYRAG	1 cut(s)	833
SmoI	CTYRAG	1 cut(s)	833
SpeI	ACTAGT	1 cut(s)	709
Sse9I	AATT	9 cut(s)	334, 511, 537, 581, 675, 793, 809, 977, 998
SsiI	CCGC	5 cut(s)	99, 115, 371, 789, 895
SspI	AATATT	1 cut(s)	297
SspMI	CTAG	3 cut(s)	90, 408, 710
SstI	GAGCTC	1 cut(s)	634
StyI	CCWWGG	1 cut(s)	34
TaaI	ACNGT	1 cut(s)	1047
TaqI	TCGA	6 cut(s)	79, 236, 263, 595, 622, 658
TasI	AATT	9 cut(s)	334, 511, 537, 581, 675, 793, 809, 977, 998
TatI	WGTACW	1 cut(s)	16
TauI	GCSGC	1 cut(s)	118
TfiI	GAWTC	1 cut(s)	728
Tru1I	TTAA	4 cut(s)	545, 804, 813, 903
Tru9I	TTAA	4 cut(s)	545, 804, 813, 903
TseFI	GTSAC	2 cut(s)	611, 712
TseI	GCWGC	2 cut(s)	182, 533
Tsp45I	GTSAC	2 cut(s)	611, 712
TspDTI	ATGAA	4 cut(s)	189, 567, 644, 909
XapI	RAATTY	3 cut(s)	793, 809, 998
XmiI	GTMKAC	1 cut(s)	281
XspI	CTAG	3 cut(s)	90, 408, 710
Zsp2I	ATGCAT	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.