Rh1AG071400

histone-lysine N-methyltransferase, H3 lysine-9 specific

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0002400
Physical Location & Seq
Reverse (-)
11968689 .. 11968988
300 bp
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UTR
Exon/CDS
Intron
Rh1AG071400.1

Sequence Viewer

Length: 300 bp
ATGCAATGTTCCGATGTATTGATCTATTCTGGTGAAGGCGGAAATTCCCCGTTTAATAAATTGAAACCAACAGATCAGACACTTGAGCGTGGAAACCTTGCATTGAAGAATAGCACAGAAGCACAAACTCCTGTAAGGGTAATCCGCACCTTTAAACTTTCAAAGAGTTCATGTTATGTTTACTATGGTCTATACATCGTAGAGCATCTTTCAAAAGAAAGGGGGCAATTTGGTAAGATGGTTTATAAATTTAGGTTGAGAAGGAAGGCAGGACAACCAGAAATAACATTCAAACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 ko04211 map00310 map04211
Pfam Domains
Protein Families
Pre-SET SAD_SRA SET

Protein Analysis

99

Amino Acids

11.36

Weight (kDa)

9.8

Isoelectric Point (pI)

30.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAD_SRA PF02182 3 - 92 1.6e-26 SAD/SRA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 246
AciI CCGC 2 cut(s) 39, 145
AcsI RAATTY 2 cut(s) 43, 248
AgsI TTSAA 5 cut(s) 64, 106, 162, 213, 292
ApoI RAATTY 2 cut(s) 43, 248
AsuHPI GGTGA 1 cut(s) 44
BccI CCATC 1 cut(s) 232
BmsI GCATC 1 cut(s) 214
BpuEI CTTGAG 1 cut(s) 104
Bse3DI GCAATG 1 cut(s) 11
BseMI GCAATG 1 cut(s) 11
Bsp143I GATC 2 cut(s) 21, 73
BspACI CCGC 2 cut(s) 39, 145
BsrDI GCAATG 1 cut(s) 11
BssMI GATC 2 cut(s) 21, 73
Bst4CI ACNGT 1 cut(s) 297
BstKTI GATC 2 cut(s) 24, 76
BstMBI GATC 2 cut(s) 21, 73
CviAII CATG 1 cut(s) 171
DpnI GATC 2 cut(s) 23, 75
DpnII GATC 2 cut(s) 21, 73
DraI TTTAAA 1 cut(s) 154
EciI GGCGGA 1 cut(s) 54
FaeI CATG 1 cut(s) 174
FaiI YATR 5 cut(s) 172, 177, 186, 193, 246
FatI CATG 1 cut(s) 170
Hin1II CATG 1 cut(s) 174
HphI GGTGA 1 cut(s) 44
Hpy166II GTNNAC 1 cut(s) 181
Hpy188I TCNGA 2 cut(s) 13, 78
Hpy8I GTNNAC 1 cut(s) 181
HpyAV CCTTC 3 cut(s) 29, 255, 259
HpyCH4III ACNGT 1 cut(s) 297
HpyCH4V TGCA 2 cut(s) 4, 101
Hsp92II CATG 1 cut(s) 174
Kzo9I GATC 2 cut(s) 21, 73
LpnPI CCDG 4 cut(s) 15, 144, 255, 291
LweI GCATC 1 cut(s) 214
MalI GATC 2 cut(s) 23, 75
MboI GATC 2 cut(s) 21, 73
MboII GAAGA 1 cut(s) 118
MluCI AATT 4 cut(s) 43, 59, 227, 248
MseI TTAA 2 cut(s) 54, 153
NdeII GATC 2 cut(s) 21, 73
NlaIII CATG 1 cut(s) 174
PsiI TTATAA 1 cut(s) 246
SaqAI TTAA 2 cut(s) 54, 153
Sau3AI GATC 2 cut(s) 21, 73
SetI ASST 3 cut(s) 99, 152, 257
SfaNI GCATC 1 cut(s) 214
SgeI CNNG 9 cut(s) 42, 61, 95, 101, 110, 143, 183, 282, 290
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
Sse9I AATT 4 cut(s) 43, 59, 227, 248
SsiI CCGC 2 cut(s) 39, 145
TaaI ACNGT 1 cut(s) 297
TasI AATT 4 cut(s) 43, 59, 227, 248
Tru1I TTAA 2 cut(s) 54, 153
Tru9I TTAA 2 cut(s) 54, 153
TspDTI ATGAA 1 cut(s) 159
XapI RAATTY 2 cut(s) 43, 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.