Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0019508

Physical Location & Seq

Genomic Coordinates Forward (+)

24376133 .. 24376773

Gene Structure 641 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG156700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGATTTTAGACCACAACTTCAGTGTTGCTGAGCTCGGTTTCGGTGGTCGGAAATTCTCCACTCTAGCGGAGCAGCAACCACTGGTGCTCAAGTTCGATAACAGCACCCTTCTCAAGGGCAACATCACCGTCAATCTATTATGGTATGGTCACTTTACCCCAATCCAGCGCTCCATAATTGTAGACTTCATCCAGTCCCTCAGTTCCCAGCGTAGTGCCCCACTCCTTCCCTCAACTTCTTCCTGGTGGAAAACCACCAAGAAATACAAGATTGGATCTTCCACTGTCCCTTCCACTAGTCCCTACGACATCCTCTGCGGCGTCCCCTACACTGCCCTCTACACCGAACCCAGAAGACCAGAAAAGCCGTCGTGGACGGTGAACACCCAAAACATCAATTCCATCAAAATTCAACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002239 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0005911 GO:0008150 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0012505 GO:0016020 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phi_1

Protein Analysis

139

Amino Acids

15.66

Weight (kDa)

9.63

Isoelectric Point (pI)

53.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Phi_1	PF04674	30 - 91	1e-18	Phosphate-induced protein 1 conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0019508)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000363.1_g000005 Rmu_sc0004045.1_g000011 Rmu_sc0005400.1_g000006 Rmu_sc0006415.1_g000003
rosa_rugosa	Rorug01G0377500 Rorug05G0155000
rosa_samantha	Rh1AG059100 Rh6AG156700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	183
AciI	CCGC	2 cut(s)	68, 318
AclWI	GGATC	1 cut(s)	283
AcsI	RAATTY	2 cut(s)	53, 408
AcuI	CTGAAG	1 cut(s)	4
AcyI	GRCGYC	1 cut(s)	321
AfeI	AGCGCT	1 cut(s)	170
AfiI	CCNNNNNNNGG	1 cut(s)	115
AgsI	TTSAA	1 cut(s)	413
AhlI	ACTAGT	1 cut(s)	296
AjnI	CCWGG	1 cut(s)	242
AluBI	AGCT	1 cut(s)	34
AluI	AGCT	1 cut(s)	34
Alw21I	GWGCWC	2 cut(s)	36, 90
AlwI	GGATC	1 cut(s)	283
Aor51HI	AGCGCT	1 cut(s)	170
ApeKI	GCWGC	1 cut(s)	73
ApoI	RAATTY	2 cut(s)	53, 408
AspLEI	GCGC	1 cut(s)	171
AsuHPI	GGTGA	2 cut(s)	118, 391
BaeGI	GKGCMC	1 cut(s)	220
BanII	GRGCYC	1 cut(s)	36
BbsI	GAAGAC	1 cut(s)	361
Bbv12I	GWGCWC	2 cut(s)	36, 90
BbvI	GCAGC	1 cut(s)	85
BccI	CCATC	1 cut(s)	410
BceAI	ACGGC	1 cut(s)	352
BciT130I	CCWGG	1 cut(s)	244
BcuI	ACTAGT	1 cut(s)	296
BfaI	CTAG	2 cut(s)	65, 297
BfoI	RGCGCY	1 cut(s)	172
BisI	GCNGC	2 cut(s)	74, 319
BlpI	GCTNAGC	1 cut(s)	30
BlsI	GCNGC	2 cut(s)	75, 320
Bme1390I	CCNGG	1 cut(s)	244
BmrFI	CCNGG	1 cut(s)	244
BpiI	GAAGAC	1 cut(s)	361
Bpu1102I	GCTNAGC	1 cut(s)	30
BpuEI	CTTGAG	2 cut(s)	74, 98
BsaHI	GRCGYC	1 cut(s)	321
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse1I	ACTGG	2 cut(s)	87, 193
BseBI	CCWGG	1 cut(s)	244
BseGI	GGATG	2 cut(s)	189, 309
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMII	CTCAG	2 cut(s)	21, 214
BseNI	ACTGG	2 cut(s)	87, 193
BseSI	GKGCMC	1 cut(s)	220
BseXI	GCAGC	1 cut(s)	85
BseYI	CCCAGC	1 cut(s)	207
BsiHKAI	GWGCWC	2 cut(s)	36, 90
BslFI	GGGAC	4 cut(s)	181, 272, 285, 308
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmFI	GGGAC	4 cut(s)	181, 272, 285, 308
Bsp1286I	GDGCHC	3 cut(s)	36, 90, 220
Bsp143I	GATC	1 cut(s)	275
Bsp1720I	GCTNAGC	1 cut(s)	30
BspACI	CCGC	2 cut(s)	68, 318
BspCNI	CTCAG	2 cut(s)	22, 213
BspPI	GGATC	1 cut(s)	283
BsrI	ACTGG	2 cut(s)	87, 193
BssMI	GATC	1 cut(s)	275
BssNI	GRCGYC	1 cut(s)	321
Bst2UI	CCWGG	1 cut(s)	244
Bst4CI	ACNGT	3 cut(s)	130, 286, 379
BstACI	GRCGYC	1 cut(s)	321
BstDEI	CTNAG	2 cut(s)	30, 200
BstENI	CCTNNNNNAGG	1 cut(s)	113
BstF5I	GGATG	2 cut(s)	189, 309
BstH2I	RGCGCY	1 cut(s)	172
BstHHI	GCGC	1 cut(s)	171
BstKTI	GATC	1 cut(s)	278
BstMBI	GATC	1 cut(s)	275
BstNI	CCWGG	1 cut(s)	244
BstSCI	CCNGG	1 cut(s)	242
BstSLI	GKGCMC	1 cut(s)	220
BstV1I	GCAGC	1 cut(s)	85
BstV2I	GAAGAC	1 cut(s)	361
BstX2I	RGATCY	1 cut(s)	275
BstYI	RGATCY	1 cut(s)	275
BtsCI	GGATG	2 cut(s)	189, 309
BtsI	GCAGTG	1 cut(s)	330
BtsIMutI	CAGTG	4 cut(s)	28, 80, 282, 330
CfoI	GCGC	1 cut(s)	171
CseI	GACGC	1 cut(s)	310
CviJI	RGCY	2 cut(s)	34, 367
CviKI_1	RGCY	2 cut(s)	34, 367
DdeI	CTNAG	2 cut(s)	30, 200
DpnI	GATC	1 cut(s)	277
DpnII	GATC	1 cut(s)	275
Ecl136II	GAGCTC	1 cut(s)	34
Eco24I	GRGCYC	1 cut(s)	36
Eco47III	AGCGCT	1 cut(s)	170
Eco53kI	GAGCTC	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	4
EcoICRI	GAGCTC	1 cut(s)	34
EcoNI	CCTNNNNNAGG	1 cut(s)	113
EcoRII	CCWGG	1 cut(s)	242
EcoT38I	GRGCYC	1 cut(s)	36
FaiI	YATR	4 cut(s)	142, 147, 176, 418
FaqI	GGGAC	4 cut(s)	181, 272, 285, 308
FblI	GTMKAC	1 cut(s)	183
Fnu4HI	GCNGC	2 cut(s)	74, 319
FokI	GGATG	2 cut(s)	176, 296
FriOI	GRGCYC	1 cut(s)	36
Fsp4HI	GCNGC	2 cut(s)	74, 319
FspBI	CTAG	2 cut(s)	65, 297
GlaI	GCGC	1 cut(s)	170
GluI	GCNGC	2 cut(s)	74, 319
GsaI	CCCAGC	1 cut(s)	211
HaeII	RGCGCY	1 cut(s)	172
HgaI	GACGC	1 cut(s)	310
HhaI	GCGC	1 cut(s)	171
Hin1I	GRCGYC	1 cut(s)	321
Hin6I	GCGC	1 cut(s)	169
HinP1I	GCGC	1 cut(s)	169
HphI	GGTGA	2 cut(s)	118, 391
Hpy166II	GTNNAC	3 cut(s)	184, 375, 382
Hpy188I	TCNGA	1 cut(s)	51
Hpy8I	GTNNAC	3 cut(s)	184, 375, 382
Hpy99I	CGWCG	1 cut(s)	373
HpyAV	CCTTC	3 cut(s)	119, 236, 300
HpyCH4III	ACNGT	3 cut(s)	130, 286, 379
HpyF3I	CTNAG	2 cut(s)	30, 200
Hsp92I	GRCGYC	1 cut(s)	321
HspAI	GCGC	1 cut(s)	169
Kzo9I	GATC	1 cut(s)	275
LmnI	GCTCC	2 cut(s)	70, 176
LpnPI	CCDG	8 cut(s)	68, 179, 206, 221, 229, 256, 364, 372
Lsp1109I	GCAGC	1 cut(s)	85
MaeI	CTAG	2 cut(s)	65, 297
MaeIII	GTNAC	1 cut(s)	149
MalI	GATC	1 cut(s)	277
MboI	GATC	1 cut(s)	275
MboII	GAAGA	3 cut(s)	231, 270, 366
MflI	RGATCY	1 cut(s)	275
MhlI	GDGCHC	3 cut(s)	36, 90, 220
MluCI	AATT	4 cut(s)	53, 177, 397, 408
MmeI	TCCRAC	1 cut(s)	29
MnlI	CCTC	4 cut(s)	209, 241, 323, 347
MspR9I	CCNGG	1 cut(s)	244
MvaI	CCWGG	1 cut(s)	244
NdeII	GATC	1 cut(s)	275
NmuCI	GTSAC	1 cut(s)	149
PkrI	GCNGC	2 cut(s)	75, 320
Psp124BI	GAGCTC	1 cut(s)	36
Psp6I	CCWGG	1 cut(s)	242
PspFI	CCCAGC	1 cut(s)	207
PspGI	CCWGG	1 cut(s)	242
PsuI	RGATCY	1 cut(s)	275
SacI	GAGCTC	1 cut(s)	36
SatI	GCNGC	2 cut(s)	74, 319
Sau3AI	GATC	1 cut(s)	275
ScrFI	CCNGG	1 cut(s)	244
SduI	GDGCHC	3 cut(s)	36, 90, 220
SetI	ASST	1 cut(s)	36
SmlI	CTYRAG	2 cut(s)	89, 113
SmoI	CTYRAG	2 cut(s)	89, 113
SpeI	ACTAGT	1 cut(s)	296
Sse9I	AATT	4 cut(s)	53, 177, 397, 408
SsiI	CCGC	2 cut(s)	68, 318
SspMI	CTAG	2 cut(s)	65, 297
SstI	GAGCTC	1 cut(s)	36
StyD4I	CCNGG	1 cut(s)	242
TaaI	ACNGT	3 cut(s)	130, 286, 379
TaqI	TCGA	1 cut(s)	96
TasI	AATT	4 cut(s)	53, 177, 397, 408
TauI	GCSGC	1 cut(s)	321
TscAI	CASTG	4 cut(s)	28, 87, 289, 337
TseFI	GTSAC	1 cut(s)	149
TseI	GCWGC	1 cut(s)	73
Tsp45I	GTSAC	1 cut(s)	149
TspDTI	ATGAA	1 cut(s)	178
TspRI	CASTG	4 cut(s)	28, 87, 289, 337
XagI	CCTNNNNNAGG	1 cut(s)	113
XapI	RAATTY	2 cut(s)	53, 408
XmiI	GTMKAC	1 cut(s)	183
XspI	CTAG	2 cut(s)	65, 297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.